| Gene ID | Annotation |
|---|---|
| Am05G008080.1 | transducin family protein / WD-40 repeat family protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am05G008080.1 | mRNA | Chr05 | 68781917 | 68795076 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00400.35 | WD40 | 263 | 291 | 1.60E-34 |
| PF00400.35 | WD40 | 340 | 377 | 1.60E-34 |
| PF12894.10 | ANAPC4_WD40 | 272 | 348 | 9.90E-18 |
| PF17814.4 | LisH_TPL | 8 | 37 | 1.00E-16 |
| PF20426.1 | NBCH_WD40 | 218 | 325 | 1.20E-15 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | DWD |
| GO term | Description | Category |
|---|---|---|
| GO:0016607 | nuclear speck | Cellular Component |
| GO:0000398 | mRNA splicing, via spliceosome | Biological Process |
| GO:0016301 | kinase activity | Molecular Function |
| GO:0071011 | precatalytic spliceosome | Cellular Component |
| InterPro term | Description |
|---|---|
| IPR036322 | WD40-repeat-containing domain superfamily |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| IPR045184 | WD40 repeat-containing protein SMU1 |
| IPR019775 | WD40 repeat, conserved site |
| IPR001680 | WD40 repeat |
| IPR006594 | LIS1 homology motif |
| IPR020472 | G-protein beta WD-40 repeat |
| IPR006595 | CTLH, C-terminal LisH motif |
| trEMBL term | Description |
|---|---|
| A0A1S2YRS3 | _ |
| SwissProt term | Description |
|---|---|
| SMU1_ARATH | Suppressor of mec-8 and unc-52 protein homolog 1 |
| KO | Description | Enzyme |
|---|---|---|
| K13111 | WD40 repeat-containing protein SMU1 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT1G73720 | transducin family protein / WD-40 repeat family protein |
| Medicago sativa L. | MsG0380014173.01.T01 | _ |
| Oryza sativa L. | LOC_Os01g21940.1 | WD domain, G-beta repeat domain containing protein, expressed |
| Cucumis sativus L. | Csa005897 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur001254s00028556.1 | _ |
| Codonopsis lanceolata | Cl_chr07_32970T | _ |
| Arachis hypogaea L. | AH01G00780.1 | Suppressor of mec-8 and unc-52 protein homolog 1 like |