| Gene ID | Annotation |
|---|---|
| Am05G008000.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am05G008000.1 | mRNA | Chr05 | 67935013 | 67937639 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 227 | 275 | 6.90E-60 |
| PF13041.9 | PPR_2 | 329 | 380 | 6.90E-60 |
| PF13041.9 | PPR_2 | 532 | 579 | 6.90E-60 |
| PF01535.23 | PPR | 534 | 564 | 6.50E-55 |
| PF14432.9 | DYW_deaminase | 747 | 839 | 4.00E-43 |
| PF12854.10 | PPR_1 | 532 | 559 | 3.40E-32 |
| PF13812.9 | PPR_3 | 532 | 578 | 3.50E-28 |
| PF20431.1 | E_motif | 649 | 711 | 1.90E-21 |
| PF20430.1 | Eplus_motif | 716 | 739 | 1.30E-06 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0003723 | RNA binding | Molecular Function |
| GO:0009793 | embryo development ending in seed dormancy | Biological Process |
| GO:0004519 | endonuclease activity | Molecular Function |
| GO:0004672 | protein kinase activity | Molecular Function |
| GO:0005524 | ATP binding | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046849 | E+ motif |
| IPR046848 | E motif |
| IPR032867 | DYW domain |
| trEMBL term | Description |
|---|---|
| A0A1S3EIJ7 | _ |
| SwissProt term | Description |
|---|---|
| PP272_ARATH | Pentatricopeptide repeat-containing protein At3g49170, chloroplastic |
| KO | Description | Enzyme |
|---|---|---|
| K23541 | Ca2+/H+ antiporter, TMEM165/GDT1 family |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G49170 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Medicago sativa L. | MsG0480019408.01.T01 | _ |
| Oryza sativa L. | LOC_Os05g12130.1 | EMB2261, putative, expressed |
| Cucumis sativus L. | Csa023176 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000726s00027897.1 | _ |
| Codonopsis lanceolata | Cl_chr04_50390T | _ |
| Arachis hypogaea L. | AH10G22550.1 | Pentatricopeptide repeat-containing protein At3g49170, chloroplastic like |