Gene detail

Detail information of Am05G007050.1 Annotation

Gene ID	Annotation
Am05G007050.1	Transketolase

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G007050.1	mRNA	Chr05	60701589	60705802	+

Sequences

CDS:

>Am05G007050.1
ATGGCTTCAACTTCATCTCCCTCCCTCACTATATCCAAAGCCCTTCTCACGCGCCCAACCTCTCTCTCTTCCTCCACGCGCATCTCCCTCCCAACCTCTTCCACCCTCCGCTCAACATCCTCTTCCAATCTCTCCCTCTCCCACACCACCCATTCTCGCCGCACCGCCGTCTACGCCTCCGTCCCTGCAACACAAACAACCGAAAAAGCCACAACCGATGAATCGCTTGTGGAGAAGTCGGTTAACACGATCCGATTCCTTGCAATTGATTCGGTTGAAAAAGCGAATTCGGGTCACCCAGGTTTGCCTATGGGTTGTGCACCAATAGGTCACGTGCTGTTCGATGAGGTGATGAGGTATAACCCCAAAAATCCTAAATGGTTTAACCGTGATCGCTTCGTTTTGTCCGCTGGTCATGGTTGCATGCTCCAATACGCTCTTCTTCACCTTGCTGGCTACGATAGTGTCAAGGAAGAAGATTTGAAGCAATTCCGCCAATGGGGGAGCAGAACCCCCGGTCACCCGGAGAACTTTGAGACTCTTGGAGTTGAAGTCACAACAGGTCCTCTTGGTCAGGGAATTGCCAATGCTGTTGGTTTGGCTCTTGCAGAGAAGCACTTGGCTGCCAGATTTAACAAGCCTGACAATGAGATTGTTGATCATTACACATATTGTGTACTTGGTGATGGTTGTCAAATGGAGGGAATAGCGAATGAAGCTTCCTCACTTGCTGGTCACTGGGGACTTGGGAAGCTCATAGCGTTTTACGATGACAATCACATTTCTATTGATGGTAACACTGAAATTGCATTCACCGAGAGTGTTGAAAAACGTTATGAGGGACTTGGGTGGCATATTATTTGGGTAAAGAATGGAAACAATGGCTATGGTGAGATCCGTGCTGCCATTAAGGAAGCAAAAGCTGTCAAAGACAGACCCACGTTGATCAAGATCACAACAACCATTGGTTATGGTTCTCCAAATAAAGCTAACTCCTACAGTGTGCATGGAAGTGCACTTGGTGCCAAAGAAGTTGATGCCACAAGAAATAACCTTGGATGGCCACACGAGCCTTTCCACGTGCCTGCGGATGTCAAAAAGCATTGGAGTCGCCACATCCCTGAGGGTGCTGCACTTGAAGCTGAGTGGAATGCTAAGTTTGCTGAATTTGAAAAGAAGTACAAGGAGGATGCTGCAGTATTGAAATCTATTATCAATGGTGATTTACCTGCTGGTTGGGAGAAAGCACTTCCGACATACACTCCAGAGAGCCCAGCTGATGCTACCCGAAATTTGTCGCAGCAAAACCTTAACGCCCTTACAAACGTTCTTCCTGGTCTGCTTGGTGGCAGTGCAGATCTTGCTTCCTCCAACATGACCTTACTGAAAACATTTGGGGACTTCCAAAGCGATTCTCCAGCTGAGCGTAATGTTAGATTTGGTGTTAGAGAGCATTCAATGGGAGCAATCTGCAATGGCATTGCTCTTCACAGCCCTGGTCTAATTCCATATTGTGCAACCTTCTTTGTTTTCACCGACTACATGCGTGGTGCCATAAGGCTTTCTGCCCTATCTCAAGCCGGTGTTATATATGTCATGACCCACGATTCAATTGGACTTGGAGAGGATGGACCAACCCACCAGCCTATCGAGCACATTGCAAGCTTCCGAGCAATGCCAAACATTTTAATGCTTCGCCCCGCCGATGGTAACGAAACGGCCGGAGCATACAAAGTTGCCGTGCTTAACCGAGAGAGACCCTCTATCCTTGCCCTTTCGAGACAAAAGTTGCCTAACCTTCCCGGAACTTCAATTGAAGGAGTTGAAAAGGGTGGATACGTCATTTCAGACAACTCAACAGGCAACAAACCTGATGTCATTTTGATCGGAACCGGTTCGGAATTGGAAATCGCTGCCAAAGCTGCCGACGATCTAAGAAAGGAAGGAAAGGCTGTTAGAGTTGTTTCGTTTGTTTCTTGGGAACTTTTTGATGAGCAATCAGAACCTTATAAGGAAAGTGTTCTCCCTGCTGCTGTTTCAGCTAGAGTTAGCATTGAAGCGGGTTCAACATTTGGGTGGGAGAAAATTGTTGGAGGAAAAGGAAAAGCAATAGGTATTGATCGTTTTGGAGCTAGTGCTCCTGCAGGAAGAATATACAAAGAGTTTGGTATCACTAAAGAAGCTGTTATTGCTGCAGCTAAAGAGCTTATCTAA

Protein:

Promoter(3k):

>AM05G007050.1
CATCACTGTACTTCGTCTTCCCCAACCATCTTTCCACCATTTTCAGTGCTGAAACTCCATTGTTGAAGCTGAAAACTCAGAATCAGCAGCACAGATCTCCATTCTCGCAGCACAGAAGCTCTGGAGTAGAGCTACAGCATCTGAAGCTTGATTTAAGCTTTATTTTGTTTGTATAATTCTGCATTCTTTTGTGTACTCTGTTTTCAGTGCTGTTACTATTTTGATGACTTCATTTTTGGTAGTTAGGTTCTATTTTGTCATGTCTAAGCTCATTATGAGCTAGATCTCTTTATGGTCAAGACTATAGTAATGCACATTTCCGGCGGATTTTAAAAAAAAAATTTAAAAATCCGCCGGAAACGCGCATTACCGGCGAATTTTTTTAAAAAACAAAATTAAATATTTTTTTAAAAAAAAATCCTCCGGGAAGTCTATTTTTTCCGCCGGAAATGCCAAATTTCCACCGGAACCGTATCGGCGGAAAAAATCCGCCAGAAAAATGCGTTTTTCTTGTAGTGCCATGGTGGCCAGGATATCGAGTCCCGTGATCAAGGCTTCATATTCGGCCTGATTGTTGGATGCCTGATCTCCTATCCTGCACATGAACCTCCATGTTTGGCCGCAGGGGCTGGTGATTACCACGCTAATGCCTGCCCCAGTTTGGGTACTCGAACCGTCAAACATGAGGATCCAAGGCTTCAACCCCAAATAGTTGACAGGCTCGGCTGGCGAATTGTGTACCTCCACGCAAGGGTGCTGAGCAAAGAATTCAGCCAGAGCTTGTCCTTTAACGGCTCTTAGCGGCACATATGTTAAGGCAAACGCGTTTAACTTAATGGCCCACTTTACAAGTCTTTCTTGCAAGACGGGCCTATTAAGAAGATATCTAATAATATCCACTTTGCACACAACCAAAACTTCCCTAGGTAAAAGGTAATATTCAAGTTTAGTACAGACATTAAACAAAGACAGACAAAGCTTTTCAATAGGAGAATATCTAGTTTCAGCATCATTGAGAATCCTACTAAGAAAATATATAGCACGCTCGGCATCATTATCATCATCTTGGGCTAACAAGCAGCCGATAGCTTGGTCCCCGGCCGCAATGTATAGCTTTAAGGGCTTCCCTGGCTGCGGAGGTACTAGGACAGGGGGATTAGTCAAGGCAGCCTTGATATGGTCAAAGGCCTCCTGTTGCTTGATTCCCCGTACCATCTCCTCGGTGTTCTTTATCCTCAACAAGGGTGAGAAAGCCTACATCTTTCCAGCTGAGTTAGCGATAACTCTCCTCAGAAAGTTGATCTTGCCTAGAAAACTCTGCAGCTCCTTCTTTGTTCTGGGAGGCCTTGCCTCTAAGATGGCTCGAGCTTTGTTCTTGTCTACTTCAATTCCCTGGTTGTGCACCAAGAAGCCTAGAAAATTGCCTGCAGATACGCCAAAAGCACATTCAGTGAGGTTCATCTTGAGATTGTGGAGTCTCATCCGCTTTAGAGCTTGTTCAAGCTCAACAAGGTGGGCCTCGAAGCTCTTGGATTTGACTACCACATCGTCAATATACACTTCCATGCTTTTACCAATGAGGTCATGGAAAATAGCATTCATGGCCCTTTGGTACGTGGCCCCTGCGTTTTTAAGGCCGAATGGCATCACCAATAAAGTGATTCAAAAAATAACTAAAACGTTTTGTCTGAGCATGTTAAAGACTACCCAATAAAGTGATCTGACCCTCCTCATATTTCATATTTAGTGGTATAATTAAGGCATTATGTCCATTCTAAAAAAACCGATCCATCGTAAGCCCACTTAATGAGTTTACGATTTTTGATGGATCCCATATCGGGCATCACTGAGTTTTTGAGTGGAAAACCAAGGTATCCTCTACACACAACTACAGAGATCCATTAAAGGTGTTGACCTCTCCCACCAAATGTTTTTCCATACGCACCAGTCAGGGATCGAACCCTTGGCCTAATAGTTAAGTACTGGTGTCCGAAGGGTCATAAGTACTGGTGTCAATCAGTCCCCACTCGTTCAACGAATCTCAAGGAGACCCATAGAACGCAAGCAAGTATTTCTGATCGCAGAGAAGGACTAAAAGTAGCTTATGAGCATGTCATAAGTTAATTCCATATATTCTCCCAAACAACATCAAAAGTATTTATGACAGTAGATAAGTCTAAATAAACCTATGCAAACAAACCCAAAGTCTACAAAGTTAGCAACAATTTGCACCTTGAAATCAAACAATAAAGCATCATCAACTACAACTTACAAGATGTGGGGCAAAAAATAGGCTTTGTTCATTGCAATAAGCTAATAACACCACCGTATTTGCGATTTTGATACTCCATTCGTTCCAAATCTTTTGATGTTTTAGCCTTCAAATTTTATTCCAAAACTTTTGATGTTTTATAAACTCAATACTATTCTAACTACTTTCTTCCGACTTTACCCTTAGCAATTATGCTGTATTAATTATGAAGAGTACATGTACCGAAACAAAGTTGTGGAAACAAGGCATTAAATAAATATATTTTAAACTAAATTTTACCCGATTAATATTTACTTATTCCATATCATTTGAGATTTCGAAGAAATGGAGTACTCGATTCGCTTTTACTTTAAATCAAAAAAGGTTCCGAGTCCCACGCATCATTTTCTCACCCTTGTGTTTTCGCCCCAACCACTACTTATTACCACAAAGCATATTAATACAGAAAAAACAAAATAAAAGTCCAACTGAAATTGTCACCAGTACCACCACCATCACCAACTCCCAAATAAATACACATTTTTAATAATCTCTCTCTCAACATAGAATAATAATTACTTTTTTGTTTCCAACACCCCTCTCTGGGCGACAACCTCAACAAACTCCTTTACCCTCTCTCTACAAAACCAAAACCAAAATGAAAATGAAACCATCAAATTCAAACCCACCCTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCATTCTTTCTCTTCACACCAACACCAACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00456.24	Transketolase_N	79	410	6.10E-151
PF02779.27	Transket_pyr	428	598	1.60E-43
PF02780.23	Transketolase_C	623	729	5.30E-11

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0046872	metal ion binding	Molecular Function
GO:0140664	ATP-dependent DNA damage sensor activity	Molecular Function
GO:0003677	DNA binding	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0006281	DNA repair	Biological Process

InterPro

InterPro term	Description
IPR005475	Transketolase-like, pyrimidine-binding domain
IPR005474	Transketolase, N-terminal
IPR033248	Transketolase, C-terminal domain
IPR005478	Transketolase, bacterial-like
IPR033247	Transketolase family
IPR009014	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II
IPR020826	Transketolase binding site
IPR029061	Thiamin diphosphate-binding fold

trEMBL

trEMBL term	Description
A0A1S2YLD1	_

SwissProt

SwissProt term	Description
TKTC2_ARATH	Transketolase-2, chloroplastic

KEGG

KO	Description	Enzyme
K00615	transketolase	[EC: 2.2.1.1]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G45290	Transketolase
Medicago sativa L.	MsG0480019171.01.T01	_
Oryza sativa L.	LOC_Os06g04270.1	transketolase, chloroplast precursor, putative, expressed
Cucumis sativus L.	Csa026367	_
Glycyrrhiza uralensis Fisch.	Glyur000014s00002488.1	_
Codonopsis lanceolata	Cl_chr03_48410T	_
Arachis hypogaea L.	AH02G25240.1	Transketolase-2, chloroplastic like

Expression pattern