Detail information of Am05G005960.1 Annotation
Gene IDAnnotation
Am05G005960.1 Tetratricopeptide repeat (TPR)-like superfamily protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am05G005960.1mRNAChr054515917345165777+

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF13041.9PPR_23153642.30E-58
PF13041.9PPR_24164632.30E-58
PF13041.9PPR_24875332.30E-58
PF01535.23PPR4895181.40E-47
PF13812.9PPR_33153636.70E-22
PF20431.1E_motif6046663.30E-15
Gene family
Gene familySubfamily
Carbohydrate-Active enzymes FamilyGH28

Gene Ontology
GO termDescriptionCategory
GO:0003723RNA bindingMolecular Function
GO:0043231intracellular membrane-bounded organelleCellular Component
GO:0005737cytoplasmCellular Component
GO:0000959mitochondrial RNA metabolic processBiological Process
GO:0016071mRNA metabolic processBiological Process

InterPro
InterPro termDescription
IPR011990Tetratricopeptide-like helical domain superfamily
IPR046960Pentatricopeptide repeat-containing protein At4g14850-like, plant
IPR002885Pentatricopeptide repeat
IPR046848E motif

trEMBL
trEMBL termDescription
A0A1S3ECH1 _

SwissProt
SwissProt termDescription
PP268_ARATHPutative pentatricopeptide repeat-containing protein At3g47840

KEGG
KODescriptionEnzyme
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Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT3G47840 Tetratricopeptide repeat (TPR)-like superfamily protein
Medicago sativa L.MsG0780039471.01.T19 _
Oryza sativa L.LOC_Os05g50460.1pentatricopeptide, putative, expressed
Cucumis sativus L.Csa011172 _
Glycyrrhiza uralensis Fisch.Glyur000342s00013735.1 _
Codonopsis lanceolataCl_chr03_28390T _
Arachis hypogaea L.AH08G14840.2Putative pentatricopeptide repeat-containing protein At3g47840 like

Expression pattern