Gene detail

Detail information of Am05G005180.1 Annotation

Gene ID	Annotation
Am05G005180.1	myb domain protein 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G005180.1	mRNA	Chr05	36910810	36914838	+

Sequences

CDS:

>Am05G005180.1
ATGGAACCGGAAGAAGCCGTTACCGCCGTCACCGCTGAAGCGGCAGACCCGGACGGAAGCGGTGACGAGGCGTTACTCGTATTAGGGGAAGGTGATACCGCCAGCAACGGTAACAATAGAGACAGAGTGAAAGGACCTTGGTCACCAGAAGAGGATGCCATTCTGAGTCGCCTCGTCAGCAAATTCGGCGCCAGAAATTGGAGTCTCATCGCTCGTGGGATCGCTGGAAGATCCGGCAAGTCTTGCCGTCTCCGCTGGTGTAATCAGCTTGACCCCGCCGTCAAGCGTAAACCGTTCACTGATGAGGAGGACCGGATCATAGTTGCTGCTCATGCAATCCATGGAAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATCAAGAACCATTGGAATTCTACTTTGAGGCGTCGGGGAGTTGACCATGATAAAATAAAGTTAGAATCAGGTAACAATGTGGAAGATATTAGCTTGGACAGAGCCAAAGCGTCATCAGAAGACACTCTATCATGTGATGTTAATTCTTTGAAATCCTCAGAAGGACGAGATGTTAGTTCTATGGAGATCGTCGATGATAAATATGAAGACAAAGCACGGACTGAGAGTCAGTTGTACCATGAAGTCAGGGATCCGCCTACTCTTTTTCGGCCTGTCGCACGTGTAAGTGCCTTTAATGTATATAACTCTTTTAATGGTTCACAGCCTTCAACATCAGTTCAAAGACCTGTTCCAATGCAAGGGCCAATGTTACAATCATCAAAACCAGAAATGGACTTTTGTAAAATTCTTGAAGGAACTTACGGTGACCGGTCCGTACCTCACCAGTGTGGCCATGGATGCTGTTCTGCTCTAAATGGTAACAACTCTAAAGGCTCTTTGTTGGGACCAGAATTCATTGAATTTTCAGAACCCCCATCTTTTCCAAGTTTTGAGTTGGCTGCAATAGCTACAGATATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGACAATAGTAGTGTCAAGATGATGGGTGACACTGCTGGTAGGGTAAATATATAA

Protein:

Promoter(3k):

>AM05G005180.1
AATTTCCGATTGCACTTTGCTAACAAAGAAACTTTAAACAACTTTAATTCACCCGACCCATATTACTTTGCTTCTCTTCATCACCTCCCCAAAGAAAACTTCTCTAAATCCAAGTGAGTCTTTGAATCACCTTTTTGGGACCTGAAAAAATGAGAATAATAAAACGTTAGACTTGTTAAGATCAAGTTGATCAACACAACCCTTATAGATATATGTCTTCCTTTACAACATAGATTTTTCTTCATTAAGGCCACTACTAGCTGCCACATTGTACATCTCAGATTGTCGCCAATTGGTGTTCAAAGAAATTTGAATGGAATGGAACCGATGCTGCATGAGATGAAATTATTATTCAAGTTTAGCCTATAAATATTATTTTTATTGAAGTTTACCTTCAAACCTGAAACTAACTCGTTCATTTATCCATTATTCCTTGTCCCTTAATTTTATACGTACGCATTCCCAACTTCCTCTCATGTGTCCTCTTTTATGATTAATTAAAATTGTTTAACAAAAAAACAAGTTTCACCAAAATAATAATTAAAATTAACCTCTAGACCGTGGGTCCCATATACTTTTCTTGAACAGATCACCTTTCATTCTGCTATGCTTGTGACCCTCCATTGGCTCGCTAATCAGCTGCTTTTCCCTCGGCTGGCTCCTTCCCAGCTTACTCTTGCCCGACAAAATCTTCCGTAACGGGCCTTCGGTTGAGTGTTGACCTTCGACGAAGACTAAATACATAAGTTTCGGGTGTAAACACCTCTATTTATCGATAAATTATATTTGACATTACTATGGTTAAAATCGATATAAGTTACAAGAAATGGGGATTTGAATTGTGACACATTTTAAAATCCATTTATAACTCCAAATTCCTTTAGAAGCTTATTTTTAGGATAATGATGATTTGACTAATTTTGTATTGAAGAGAAGAGTTTAAGTAATTTATAGTGTGGAAAATAGAGTTTTAAAAGAGTGTTGAAAGCTATATAAATAAAGATAGTAAAGCACACACATAATTTATAGTTGTTCACCCTCAATCAACTAGGGCTACATCCACGCCTCACACCCTGTGATATTTTTCACTATTTTTCGAATAGATTACAAGCCAATCACAGACTACAACACTGATGGTTTCCTTTTCACAGCCCTATCAACTGTCACATTAGTTTTCTAAACAAGTTCTAGCAACTTAACCTCTAAGACATTTCTTAAACTTTTTCCCAAACAATACAACAAACAATGCCTTGTTTATACAAAATATGTTTAGTTTGGACTGGGATAAAATAGCTTTAACAAAGTAGTCCCATGAGATTTTGATTTGCAGTGAGTGTGTTTGGAGAGAAGATAGGTTACTCAGAAGCGCGCTCTTGAAAAGCTTCTAAAGTGATCTACCAGATATGCGTATTGTCTCTCTTAGTCTTACATGAGGTGGTCTATGTTACATTTATAGAGCTTTTAACTCAAAAGAGTCGTTGGAGCGGATCTCATAAGCCAATTGTGGCCGTTGTGCCTTTTGCACAAAATCGGGTATACTACAGCAAGCTTCGTACACTGCTGCAGGTTACCGTTGGAAGCTTCTGAGCTTGGTACATAAGAGGATCTATTGTTTAAGGCTTCTTTGACTTGATCTCTATTCTTCTAAAGACATAGCTTAACTTGATATGACTTTTTGATCGTTTAGAAGAAATAATACTACTCTTTTTTATTTGAGAAGCTTTTTAGGTGTCTTTTGAACTCTGCCTTCTGAAGTACCTTCTAAAGAAGCTTCTGAGCATCTTCTGAAGTATCTTCTGAGTTACTTATTGTTTGATTTTATGTCTTCTAGTGAACTCATCTCAAGACAGACGTTAGATGTCAGACCTCTTTGGTTCATTTCATACTTAGTTGAGAATGTTCCAATATTCTTTTCTTCTTAGCACCTCTTTGAGTTTATAATGTATCTTCTAAAGCTTACAACTATCTTCTCATGATGTGTTTTGTTTAACACATGTTCTTCTTGATACTAATAAGATTTGTTCCTGTCTAAAATGCCACTCAAGAAGATTCATTAGAAAACTAATGAATCAAAAAGCATAAAGATCTTTTCAAAATAGTTTGTTCTCATCAAAACTTAATCTTAGAGATTTTGTCTCAACAAGGGTGACCCAACACTTCAAGTGGTTTATGATAGTCAAACGTTTGATAATTGTTCCAAACTACAATGATAACTACCTCGCCTCGTAAGTAGAAGCAAAAGATTCTTCATGTCTGCACGACCGACATTACTTGTTCGACTAAAAACAATAAAAAAGCAAGCTAATCAAAATTTAGATAATATTACTCATTTTTTGTAGTTTTCAGCGAACCAACCCCAATTAAATCACTTTTGAGCACAACGCCAATTGAAAGACCGTGAACTTCTACTTACGAGAAAAATCTATGAACCTCTACTTAGCCCACCACAACAATCATTATTTGAGTTTGAAACAATTTTCGAGTCTTTGACCACACTAAATTGACCACCTAGCCATCACCTATTGTTTTTATGATCATTAATTAATAATTAATTATTATTATTATTATTATTATTATTATTAATAACTAACCTCATTTGAGTTTGAAACAATTTTCCAGTATTTTCTTTTTTTGTGAACAAAAGGGCCAAACAAAAACTAGGCCCTTACATCCACTACCATCAGCACATACAATTTTCGAGTGTTTGACCACACTAAATTGACCACCACCTAGCCATCACCTATTGTTAATCATCATTAGAGGAACGCATGGAATTGCAATTTGCAATTGAATTGGGGGGACAGATGGACATGTTCCAATGTTTCTCAACCCCGTTTCTACTCTACAGTTACAATATGAACGACAAACACACTTGACGTTAAAACTGCCTAAACATTTGCGCCAACAAAATTCTACTTATATTATGTCTCTATCACAACTCTTCACTCTTCACTTTTCACACTCACTTTCTTTCTTAACTTAATAACTAACCTCAAAGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00249.34	Myb_DNA-binding	44	90	2.20E-32
PF00249.34	Myb_DNA-binding	96	140	2.20E-32
PF13921.9	Myb_DNA-bind_6	47	104	1.10E-23
PF13921.9	Myb_DNA-bind_6	99	143	1.10E-23

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Gene Ontology

GO term	Description	Category
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0005829	cytosol	Cellular Component

InterPro

InterPro term	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox-like domain superfamily

trEMBL

trEMBL term	Description
A0A1S3DVH7	_

SwissProt

SwissProt term	Description
MYB1_ARATH	Transcription factor MYB1

KEGG

KO	Description	Enzyme
K09422	transcription factor MYB, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G09230	myb domain protein 1
Medicago sativa L.	MsG0380017116.01.T01	_
Oryza sativa L.	LOC_Os01g63160.1	MYB family transcription factor, putative, expressed
Cucumis sativus L.	Csa017970	_
Glycyrrhiza uralensis Fisch.	Glyur001830s00040096.1	_
Codonopsis lanceolata	Cl_chr05_43840T	_
Arachis hypogaea L.	AH12G22990.1	Putative R2R3 MYB protein 5 like

Expression pattern