Gene detail

Detail information of Am05G005100.1 Annotation

Gene ID	Annotation
Am05G005100.1	Pectin lyase-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G005100.1	mRNA	Chr05	35869036	35880675	-

Sequences

CDS:

>Am05G005100.1
ATGCAGAGGATGATCACTTATGTTTTGATTCTTTGTTTTGTTTCACCTTGTCTATGTCTGAGGCAGAATGTCGAAACCAAAAATACTTTATATAATGTGATTCAATATGGTGCCCGTGGAGATGGCAAATCTGATGATTCACAAGCATTTTTAAAAGCATGGAATAGTGCATGTGGAGCAGAAGGGATAACAACATTAGTTATACCAGGAGGAAAATCATTCATGGTGACACACTTAATATTAGATGGTGTGACTTGCAAGGCCAAGAGTATTCACATTCAGCTCCAAGGGGAAATAATTGCACCTTCTAGGGCAGCATGGAAAGCCGGACAATATTGGGTCACGATCAAACATGTAAACAGGCTCACAATTGATGGCAACGGAGGAATCGATGGCGATGGTTCTACTTGGTGGCAATGCAAAAATTGTCAACGACCAGTGGCCTTATTTTTCCTCGACTGCAATGATCTTATTGTTAGAGGCTTGAGAATCTCTAATACCCCAGGAACTCATATAGCAATAGCTACCTGCAAGCGAGCAACATTATCTAACATCTTCATTAATTCTCCTCCTGACAGTCCCAACACTGATGGATTTGACATTTCTGATTCCAATAATACATTGATAGAAGACTCCAACATAAGATGTGGTGATGATTGTATTGCCATCAATAGTGGCTCCACTTACATCAATGCTACCCGGGTTACTTGTGGACCAGGCCATGGGATAAGTATTGGTAGCCTTGGTAAACATCTAGCTCGTGCTACTGTTGAAGATGTCTATGTAAGGAATTGTAGTTTCATCGGAACTTCAAATGGAGCAAGAATCAAGACAGTTAATGGTGGATCAGGTTATGCAAGGAGAATTACTTTTGAACATATCCAACTTATAAATGTTCTCAATCCAATAATTATAGACCAGCACTATAAGTACATTCTGGATTCTAATGTGACAAATCGTGGAGTTTATGGAGCAGTACAAGTGAGTGACGTGACATATCGTGGGATTAATGGAACTTCTGTCGGTGACACGGCTATTTACTTTGACTGTAGCAAACTGGGTTGTGCCAACATTGTACTAGATCAAATTAATATTGTCTCTGCTCAGCCAGGAAGGAAGACTCGTGCTTTTTGCAGATATGTTCGTGGAACAGCTAAGTCCACTAGTCCAAATGTGCCTTGCCTAAATCATATATAA

Protein:

Promoter(3k):

>AM05G005100.1
ACCTAGGTGAATCTTTCCCTTGGGGAAGCCTATATTCAAACTTCAGTTCCTAATTAAAATCTTCCACCAGCCATTGCTCCTTTATCATCATCGCAGATACGTGTAACCTCTTCCGACTTAAAGCATCTGTGACTACATTCACTTTACCTAGATGATATTGCAATGCAAAGTCATAGTCCTCTAGAAATTCCATCCATCTCCGTTGTCTCATGTTCAACTCCTTTTGGTCGAACAGATACTTCAAGCTCTTATGATCATTGAACACAGTGAAACGAGATCCATAGAGATAATGCCTCCAAATCTGCAAAGCAAAGACTATAGAAGCTAAATCCAACTCATGAGTCAGATAATTCCTTTCATGAACTTTTAATTGCCTTGATGCATAAGCAACCACCTTCTTCCCTTGCATCAATATGCATCCCAGTCCTTAATAAGACGCGTCGAAATATACTTAGCATATAGCTGACGGTCTTTTAAAGTTTATAGGACTATTCTCAAATATTTCATGTGTTCCTATTTTGTCGACGAATATTCATATAATCCATCAGTATAGCTGGTGCATTGGTCACAACAAATTGCATAACTAAGTACTCATAATGACCATATCTGGATATGAAAGTTTCTTAGGTATATCTTCTTGTTTGGCCCTAATCTGATGGTATCTAGATCTTAAATCAATCTTGGAAATTATCTAGATCTTAACTCAACTTCCTATAGGCTATGCATAGCCTATATGATTCGTCTTTCTTCTTGATGAACGAGATTGGATCTCCGCAGGGTGAAACACTTGGCCTTATGAACTCTTTTCTCATCATATCATATAATTGTTATTTCAATTCAGCTAATTCATTTAGTGACATCTGATATGAAGGCATAAAAATAGGTTATGTACTAGGTACCAAGTCCATAGTGAATTCAATTTCCTTTACTAGTGAAAAACCAGGTGTTTCATCTACAAAATACTTCAGAAAAGTCCTTACGATAGGTAAGATGTTAATTTGGAACTTTTCCTCCACTTCCAATAAGTAAAACTTCAAATACTTTTGCAGCATATGACGTTCTTTAGTCACACCTTGCGTGAGTGGTGAAAGATCTGATGAAAAGGATAAGGTTTACCTAGCGCAATCTAAGGTAACACGGTTAGCCGAAAGCCAATCCATGCCTAAGATAATGTCTATCTCTTGAAGAGGTAGAAAAACTAAAGCTATAAGAAAACGCTTATTTTCTAGGCTTATGAGACATTTTAAACAGACAGAATTAGCAGCAAGCAATATACTTGTTGGAATAGAAACTATTAATGGATTTTATAACTCTGACATATAATCTTGGCTTAATTAACTTTTGGTCCCCCTATTATGACTCATTCACTATTTTAGTCCCCAAACTTTTTTCTGCAAACTCCGTTTCCCCTATTTTCTCAATTTCTAAAATCACTATCCCTCCCTTGTTTGGTCAAACATTTTGCTGACTTGTTACTCATTAATCCTAAGTGGAATGTCATGGTGGTCTACCATGTTGGATTTTAAATAAAAAAATCTAATTTTTAACCCAAAATAAATATGACGAAATTAAGTAGGTCTCGATGGAAGAAGATTAAGTTGTTTTTTCTAATTTAACCAAAAAAATAATATATTTTATTTTAAAATCAAACATGGAAGTACAATGTGTCATTCCAAGTAGCATTAGTGTGTGACAAGTCAGCAAAATGGTTGACCAAATTAGAGAGGGACAATGATTTTAGAAATTGGGAAAAAAAGTTTGGGGACTAAATTCGTGAAAGAAAGTTTGGGGACTAAAAACATGGGTGGGTCATAATAGGGGGACCAAAAGTGTAATTAAGCTTATAACTTCATATAATCTACTCATACATCAGAGATAAAGGAATGAGTAGTTCCTGAGTCAAATAACACAAATAGGAGGCTACCGAAAAAAAGACACATACCTTGTAAGAGTTCAGTTTGCTGTGAGGCTTCAGTACCCCATGTTGTGAATACGCGACCTGTAGCTAGAGGTCTGACAGTTGACGTTCTTGTAGTTGGATTCTTCTGCCTTCCTCCATCGCCTACTTTATAGTTGACGGTCATTCTAGTTCCATGACCTGCTCCACTCAACTATCCTTGCTTCTTAAAGAAATCCTTAGCCATGTGACTGATTTTTCCATGGTGGAAGAACATTCCTTTAAAACTATGAGGACATTCCCTTGTGAAATGACCTCCTCCACGCGTATAGCAGCGCAGTGCTGACCTTCCATCTCCTACTACTCCAAATGTAGTAAATTGTTGTGTTGGTCGAACGGAAGGTCCTCCTTTTCTCCTACATTCCTCACACATTCTCCTCTTTGAAAACCCGTGGCCTTCACACAATCATAGCCATTTTATAGGCTCACAAGGACTCACTACCCTTTTCTATAAATAAGTTAGTATATGATGTGGATCCAGCTTAATTCTGCCAATACAACCCTACTTCATAGTCTGATCCTTGAATCGAACTGTTCTGATACCACCAAATGAGAGATCCCTTCCCGTCTCATGATTTTTTTTTGATGAGTTAAGTCATATAAAATGAATTTCTACAATAAGCAATAGGTTTAATTCAACATTTATTTGTTCTATATCAGATTTTATATACCAAAAACCTGATATAAAGGTCAATTTTTTTAATAGACTTTTAGTTTCATTGCTATAAATGAAGAGAATGAAGAATTGACCAGACATTTTATAAAGATTCAAAATTACATAAATTGGGGTAGTTTATATTGTTTAAAATAATATAAATGGTAATTAAAATAAATAAAAAATGATTTTTTTTATCTAAATGAAATGTGTAGAAAACTTTTTTTGACTTTCGGATCTAGGGTCAACAAATTAATCCCTTCTTTAATACACCCCTTAATCCTATTTAAATATTTTCTATCTAAACCCCACAAGTGCCCTCTTCACAAATCATTATTCCAACTCTCAATCTTCATATTCATCTGTTTTGATTTTACACTAGTCAAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00295.20	Glyco_hydro_28	58	382	4.30E-79
PF12708.10	Pectate_lyase_3	32	265	9.00E-12

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH28

Gene Ontology

GO term	Description	Category
GO:0004650	polygalacturonase activity	Molecular Function
GO:0005975	carbohydrate metabolic process	Biological Process
GO:0016020	membrane	Cellular Component
GO:0046576	rhamnogalacturonan alpha-L-rhamnopyranosyl-(1->4)-alpha-D-galactopyranosyluronide lyase activity	Molecular Function

InterPro

InterPro term	Description
IPR011050	Pectin lyase fold/virulence factor
IPR012334	Pectin lyase fold
IPR006626	Parallel beta-helix repeat
IPR000743	Glycoside hydrolase, family 28

trEMBL

trEMBL term	Description
A0A072TLD8	_

SwissProt

SwissProt term	Description
PGLR3_ARATH	Probable polygalacturonase At3g15720

KEGG

KO	Description	Enzyme
K01184	polygalacturonase	[EC: 3.2.1.15]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G15720	Pectin lyase-like superfamily protein
Medicago sativa L.	MsG0880042039.01.T01	_
Oryza sativa L.	LOC_Os01g07790.1	polygalacturonase, putative, expressed
Cucumis sativus L.	Csa003051	_
Glycyrrhiza uralensis Fisch.	Glyur000279s00013236.1	_
Codonopsis lanceolata	Cl_chr03_18430T	_
Arachis hypogaea L.	AH18G00770.1	Probable polygalacturonase At3g15720 like

Expression pattern