Gene detail

Detail information of Am05G004200.1 Annotation

Gene ID	Annotation
Am05G004200.1	ZIM-LIKE 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G004200.1	mRNA	Chr05	28424259	28428548	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G004200.1
ACATGCAGAATCTCATGTATCTTGGCATTGCTTAGAGTGATGAAACTATTTATACCAGCCAAAGAGATCATATTTGCCTTTTCTTTCATTATAAGGTTGTTATGGTCATTATTCTTCATAAGCCTACTTAAAGATTGTTATCAAATTTAATTTGTCTTGCAGGTTTATGTGACAATGTATCTCAATGATTGCCAACGCACGGCTTTCTATGAAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATTGAGGTTAATTTGTACTTACATAACAGTCAAAATAATTGCTTATGAAGAGTTGATCAACAAAGAACAAATGTTGAACTGAGAAGTTACATCAGTTACTCATTTCTGGTATCTTTTCTTTTAGGGAAGGTTGGTGAATTTGAAGGAGATGCTGTTGTAGTAAACGAGATATCCCTATTGACAAGAGTGTTATGGTATGGTTGAGAAATGTTGTTTGAATTCAGTTCTACTTGAAGTTTCTAATTCCCCAAACCCCTCTGGTTTTTCATCTGTTTCTGAATTCAATGTTTGTATACTTAGATTACATCTTATATTTTTTAATTTGCTTGATAGTTTGATCATGTTGGATCAAGATCAGTGAATGTTCGGCCATCATATGGCTACTCCATAGCATCTGAACATCAACCTTCAGGCTGGAGTTGTACCAAAATCTTTCCCCTGTGTAAGGTGATTTTCATTTATATCCTTATTGCTATCATACTAATTTTGCTTTAATGTCTTCTATTTTTGTTATGATCATTTCAATTTGTTTCTATTTACAGGAAATAGCAATAGAGAATAGAGTGGAAGCTGGTCCCGTGCCAAATTGGGTGTTGTGTGGGTTAGTAGTAAAAGCATTTGAAAAAGGCCAGAGTCAGGAAAAGACAAGAAGAGTTATGGGCACTAATACTATTTCATGCTTCATCTTAATGGGAAATGTTATTAGACTAAACAGTTAGTTACTATTCTGATTATTTGACTCATTCCTAACTTGATTTTACTAATTATTTGAGATACATACACACACCCTATTGCTATTGTTTAATCTAACTATTTGACTCATTGCTAACTTAATATTAGTTGTGCATTTGTTTTTAACTTTTTCTTTTTTAGTTTGTTGCTCTTATATATATATATATATATATATATAACTTTTGACTTCTAATTCTAACTTGACTTCTAACTCTAACTATAACTTTTGACTTCTAATTCTAACTTGACTTCTAACTCTAACTATTTCACTCATTTCCTTTTTTATTTGTTACTCTTATATCCATATATATATATATATATATATATATATATATATATATATATATATATATATGTCTTATCACTTCTAACTCTATCTTTATTCGTTTTTCTTTATTATTCTTATTGGTTCTTCGACATATATTATGTCTTCTAACTCTAACGTTTTTTACTTTCTTACTCTCATTGCCAACTTAATATTAGTAGTGCATTTGTTATTAACTTTTTCATTTTTTACTTTGTTGCTCTTATATCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGACTTCTAATTCAAACTTGACTTCTAACTCTAACTTTTTACTTTTTTATTTTTATTGTGACTTCTTACTCTAACTTTTTTACTTACATATTGGTTCTAATTTTTTTTTACTTTCATGAAATGATGTTTTTTTTTGTAATCTTTTGGGCTTTTTTGATACTTTTATTACTTTACTTTTTAAATTTTTTCTTAATATCTAATCTTTAATCAAATTTCCTTAATACCTAATCATCAATCAAATTAAACGCGTTAATTTCGTTGATATTAGCTCTCCCCGTGCATCGCACAGGAGATGAGGCTAGTTTAGTTAAACGAAATGTTGATGGTAGCTCCTTTGAAAACCATGGTCGTTATGGATTTGGTGGTCTCTTTAGAGATTATAATGGAAATTGGATTATTGATTTTTCAAGAGGAGGACGTGGTTTCACTACCAACATTAATGCTGAACTGCAAGCTATCGCCCAACATAAATTAACATCTCTAAAAATTAATATCTAAATTCTTTAACAACAAAATTACTTATTTTTTAATTGGTAAGAATATATTTTGCCCAACATAACCCTTGACGACGTAAAAACAAACAATTAAACGAAGAAAGAAAGAAAAGAGTAAAAGAAAAATGGATAGCGGAACACGCAATGATGAAATGTTTTTAGGGTGGTGAAAAAGATATTGACTGACTTGAAAGGAAGAAGCCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATCTCTTTCATTCCATTTCTAACCCCCTTTCCTTTCCTTCACCCACATTTCATTTTCTTCTTCTTCACTTACTCAGCTCCTCTCACCCAATCCCAACCCTCGTGCTTCTCTGCCGGTTCTGCAGATCAAGTTACAATCTTCAAGGTATTCCCTTCTCCTTCAATTCAAAATTCTTTCTTTTGAAATCTCGTTTCTTTTCATCCATATATATTTCGTTTTTCTGATTCAGAACCCTAGGGATTCTTTAATTTCTGTTAATTCACTGAAATCCTCTTTTTTTTGGGCGTTTTCCTGGGCCAATCTGTTATTGTCTCGTCTCTAGCAAAATCCCTCTCTTCCTTGCTTTTGGAATTAGATGCTTTTACTTTCTGCACCCCTCCTCCCCAATTTCTGCAACCACGAGTATATGTTTGTCTGTTATCACTATTTCATTTATCAGAAATGTACTTTAATTGGAAGAATGAAATAGTATACACTTTTCCCTTCACTTTTACTACTATTTATAGTGCACTTTTGTACGTGTAATTTGGTTTGCTATAAGAAATTCATGCTCTCCATAGTACATAGTTTGTATCTTGTTTTTTATTTTTCTTCGATGTTATTTTTATTGTTGGTTTGGTTTTCTTTGGCTACCCTTATTACTAATCTTTCTGCCATTTGTTAAGGTATTTTTGGCTTTTACTGTTCCAATCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF06203.17	CCT	150	192	6.80E-15
PF00320.30	GATA	226	261	3.80E-13
PF06200.17	tify	88	116	2.40E-11
PF09425.13	Jas_motif	150	172	9.80E-07

Gene family

Gene family	Subfamily
Transcription Factors Family	C2C2-GATA
Transcription Factors Family	Others
Transcription Factors Family	Tify

Gene Ontology

GO term	Description	Category
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0008270	zinc ion binding	Molecular Function
GO:0042802	identical protein binding	Molecular Function
GO:0001067	transcription regulatory region nucleic acid binding	Molecular Function
GO:0003690	double-stranded DNA binding	Molecular Function

InterPro

InterPro term	Description
IPR013088	Zinc finger, NHR/GATA-type
IPR000679	Zinc finger, GATA-type
IPR010399	Tify domain
IPR045280	GATA transcription factor TIFY-like
IPR010402	CCT domain

trEMBL

trEMBL term	Description
A0A151RPA5	_

SwissProt

SwissProt term	Description
GAT28_ARATH	GATA transcription factor 28

KEGG

KO	Description	Enzyme
K13464	jasmonate ZIM domain-containing protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G51600	ZIM-LIKE 2
Medicago sativa L.	MsG0480018245.01.T01	_
Oryza sativa L.	LOC_Os06g48534.1	GATA transcription factor 25, putative, expressed
Cucumis sativus L.	Csa010036	_
Glycyrrhiza uralensis Fisch.	Glyur000586s00021850.1	_
Codonopsis lanceolata	Cl_chr02_01310T	_
Arachis hypogaea L.	AH19G01180.2	GATA transcription factor 28 like

Expression pattern