| Gene ID | Annotation |
|---|---|
| Am05G003420.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am05G003420.1 | mRNA | Chr05 | 24148147 | 24150405 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 210 | 255 | 2.70E-76 |
| PF13041.9 | PPR_2 | 247 | 290 | 2.70E-76 |
| PF13041.9 | PPR_2 | 279 | 327 | 2.70E-76 |
| PF13041.9 | PPR_2 | 314 | 363 | 2.70E-76 |
| PF13041.9 | PPR_2 | 498 | 544 | 2.70E-76 |
| PF12854.10 | PPR_1 | 275 | 308 | 4.00E-66 |
| PF12854.10 | PPR_1 | 310 | 343 | 4.00E-66 |
| PF12854.10 | PPR_1 | 347 | 378 | 4.00E-66 |
| PF01535.23 | PPR | 282 | 311 | 2.90E-64 |
| PF01535.23 | PPR | 317 | 346 | 2.90E-64 |
| PF13812.9 | PPR_3 | 269 | 328 | 2.10E-40 |
| PF13812.9 | PPR_3 | 302 | 358 | 2.10E-40 |
| PF17177.7 | PPR_long | 228 | 358 | 2.60E-23 |
| PF17177.7 | PPR_long | 332 | 451 | 2.60E-23 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0003729 | mRNA binding | Molecular Function |
| GO:0009507 | chloroplast | Cellular Component |
| GO:0031930 | mitochondria-nucleus signaling pathway | Biological Process |
| GO:0009409 | response to cold | Biological Process |
| GO:0005739 | mitochondrion | Cellular Component |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR002885 | Pentatricopeptide repeat |
| IPR033443 | Pentacotripeptide-repeat region of PRORP |
| trEMBL term | Description |
|---|---|
| A0A9D5BMJ8 | _ |
| SwissProt term | Description |
|---|---|
| PP190_ARATH | Large ribosomal subunit protein mL102 (rPPR5) |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT2G37230 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Medicago sativa L. | MsG0280008037.01.T01 | _ |
| Oryza sativa L. | LOC_Os02g02020.1 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa020527 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000703s00022089.1 | _ |
| Codonopsis lanceolata | Cl_chr05_27720T | _ |
| Arachis hypogaea L. | AH19G17810.1 | Pentatricopeptide repeat-containing protein At2g37230 like |