Gene detail

Detail information of Am05G003000.1 Annotation

Gene ID	Annotation
Am05G003000.1	Tetratricopeptide repeat (TPR)-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G003000.1	mRNA	Chr05	19712671	19726097	+

Sequences

CDS:

>Am05G003000.1
ATGGCCCCAAGATCAACCAAAGGGAAATCAAATAAAGCTAAGGCAGAGAAGAAGAAAAAGGAAGAGAAAGCAGTGGCACCTTCTCTTGTTGATATCACTATAGTTACTCCCTATGATTCACAGATTGTATTGAAGGGTATCTCTACTGATAAGATACTTGATGTAAGAAGATTGTTGGCTGTGAAGGTGGAAACATGCCATTTCACAAACTATTCTTTATCTCATGAGGTTAAAGGTCAGAAGTTAAATGATAGAGTGGAAGTTGTTACCCTAAAGCCATGTGTTCTAAGAATGGTTGAAGAGGATTACACGGAAGAGGCCCAAGCAGTTGCACACGTGCGAAGGGTATTGGACATTGTGGCCTGCACAACTAGATTCGGGAAGCCCAAACGTAGCTTATTAAGCCCAGATACAAAGCCCAAAAAGAACGGAAAGGCCCCAAATTTTAACAAGACCAATCTGAGTCCACCCGCAACACCGAATGGAGAATCTCGGGTCGGGTCACCAATGTCGGAGCCACCAGCGTCGCCGATATCGGATAATGTGGGAATGGTGGCCATTCACCCTACGCCGAAGTTATCAAATTTTTATGAGTTCTTCTCGTTCTCTCACCTCTCTCCTCCGATTTTACATTTGAAGAAGTGTGAATTGAAGGATGAAGATGATAGACGCAAAGGAGATTACTTTCAGCTTCAGGTTAAAATTTGTAACGGGAAAGTAATAGAAGTGGTATGTTCAGAGAAAGGGTTTTACAGTGTGGGAAAGCTGTCTCTACAGAGCCACACTTTGGTTGATCTTCTGCAACAGCTCAGCCGTGGCTTTGCTAACGGATATGGATCATTGATGAAAGCTTTCTCAGAACGTAATAAGTTTGGAAATCTTCCATATGGACTCAGAGCAAATACATGGCTGGTCCCTCCATCTATTGCTGAGTCACTTTCAACTTTTCCATCTCTACCTGCTGAAGACGAAAACTGGGGCGGTAACGGTGGTGGACAAGGAAGAAACGGTGAATATGATCTTAGACAATGGGCAACAGATTTTGCAATATTGGCTTCTCTTCCTTGCAAAACTGAGGAGGAGAGAGTAATCAGAGATAGAAAAGCTTTTTTGCTTCACAGTCAGTTTGTTGATACCTCAATATTCAAGGCTGTTGCAGCTATACAGCATGTTTTGGAGGCCAAGTCAAATGTGAAGAATGAAGTGAATTCTTCCCTAGGTTCAGTTCTGCATGAAGATCATGTTGGAGACTTGTCCATTGTAGTCAAACGCGATATCCAAGGTGGAAATAGGAAGGTTGATGATTCTACACCGAACGAATCGAATGCGCATGAGGAGGTTGTTCGGAAGAATTTACTCAAAGGGTTGACTGCAGATGAAAGTGTCGTCGTTAATGACACTTCTTCCTTGGCTGTGGTTGTTGTACACCACTGTGGTTATACAGCAACAGTAAAGGCTGTGGGGAATGTGAACGCGAGAAAGCCTAAAGTTCAAGATATTGAAATAGATGATCAACCAGATGGAGGGGCAAATGCTCTTAACATTAACAGTTTGAGGATACTACTTCACAAGTCTGAAGCTGAGTCATCAGAAGGGACTTTAACATCCCAGTCAAATGTTGATGACTTGGATGCTTCTAAATATCTTGTTAGGAAGGTGATCCAAGAATGCATAGAAAAGATAAAGGAAGAGCCAAGTGTTTCGGAAAGGTCTATTCGATGGGAACTTGGTTCTTGTTGGATGCAGCATTTGCAAAAACAAGAAACTACTACTGATAATAGTTCCAATAACAAAGAAAGAAATGATATTGAGCAAGCTGTGCAAGGTCTTGGAAAACAATTTAAACTTTTGAAGAAAAGGGAAAAGAAACCAATTAATTTAGATGGTGAAGATTCTAGGGAGAATGGAAATGTGAATGTGGATGCTGATAAAGTTGAGCCTAACAATGATGAATTAAGTAGCTCTAGTGAATTGGAGAAGTTACTTTCTGAAGACGCGTTTTTGCGTCTCAAAGAATCTGGAACTGGTTTCCATTTGAAGCCGGTGGATGAGCTTATCAACATGGCACACAAGTTTTATGATGAAGTTGCCTTGCCAAAGCTGGTCACGGACTTTGGATCACTCGAACTTTCTCCTGTGGATGGTCGTACAATGACAGACTTTATGCATTTGCGAGGACTAAAGATGCGATCTTTGGGTGAAGTGGTCAAACTTGCAGAGAATCTTCCACACATACAATCACTTTGTATACATGAGATGATTACTCGGGCATTCAAGCATCTACTTAAAGCAGTTATTGCCTCTGTTGACAATGTAGCTGATTTACCTTCAGTCATTGCATCAACACTGAATTTCTTACTTGGAGGGTGTCGAACCGAAGATACTGACCAAACTTTGCGTGATGACCATCATCTCAGAATTCAATGGTTACGTTTGTATTTGTCCAAAAGATTTGCATGGACATTAAATGATGAATTTCAACATTTGCGCAAGTTATCTATTCTCAGAGGACTAAGTCATAAGGTTGGTTTGGAATTGTTTCCTAGAGATTATGACATGGAGTCATCTAAGCCCTTTGGGAAATATGATATTATCAGCCTGGTTCCTGTTTGCAAGCATGTGGGGTGCTCCTCAGTAGATGGACGCAATTTATTAGAATCATCTAAAATTGCTCTTGATAAAGGAAAGCTTGAGGATGCTGTTAATTATGGAACAAAGGCATTAGCAAAGATGATGGCTGTTTGTGGTCCATATCATCGAAATACTGCTAGTGCGTATAGTCTTCTAGCTGTGGTTCTCTACCACACAGGAGACTTTAACCAGGCCACCATTTATCAGCAAAAGGCGTTGGATATAAATGAGAGGGAGCTTGGGCTTGACCATCCCGATACAATGAAAAGCTATGGGGATCTTTCTGTTTTCTATTATCGTCTGCAACATATTGAGCTGGCTCTGAAGTATGTTAACCGTGCTCTATTCCTACTCCATTTTACATGTGGATTGTCTCATCCAAATACAGCTGCTACATATATAAATGTGGCAATGATGGAAGAGGGTATGGGAAATGTTAACGTGGCGCTTAGGTACTTGCATGAAGCACTTAAATGCAACAAAAGATTGTTAGGAGCAGATCATATACAGACCGCCGCAAGCTATCATGCCATAGCCATAGCTCTTTCGTTGATGGAAGCGTATTCTCTGAGTGTGCAACATGAGCAAACTACACTTAAGATACTTCAAGCAAAGCTCGGGTCAGAAGATCTTCGTACACAGGATGCTGCTGCATGGCTTGAATATTTTGAATCAAAAGCCATAGAACAGCAAGAAGCAGCTAAGAATGGAACTCCAAAGACAGATACATCAATTGCAAGTAAAGGTCACCTTAGTGTATCAGATCTCCTGGATTTCATAAGTCCTGACAACGATTCAAAGGCAAATGATACTCAAAGAAAACAGAGGCGTGCAAAGGTACTTCCAGTGAGTGATAACAACCATCAAGAACATGATGATGCCGTAGCAGATGATGTCATTCTTGTTGATAACACAAAAGACGCCACAACAATGATAGATGGCAACGTCGAAGAAACAAATGGCACACATGATTCTAAAGAACTTAAAGAAACCGAAGAGCCTAAAGAAAATGGAGATCTCAGCAGGCACACGCCGGTAACAAGTGAAGCTGTTTATGAGACCTCATCTGATGAAGGTTGGCAAGAAGCTAATACAAAAGGGAGGTCAGCTAATGCTGCTAAGCGCAAGTCTGGACGCCGACAACGGCCTCACCTGTCAAAGCTTAGCATTAACAATTCTGATAATTACATTTACAAGGAAGGCGGTTATAGGAATGACATTACTTCCCTGCCCCAGAAAGGAGTTCCAAAAGTCACCTCAGATATCTCATCTCCAGCTAGACAATCAAAAACTCGAAACGTGACTTTGGACAACGATTCTGTTAATCATTCAACAAAAGCTATGTTATCCAAAATTTCATCTCCGGCATCATTGAGTTCTTTAGCCTCAAAGTCTATATCTTACAAAGAAGTGGCTGTGGCACCACCAGGTACAATTCTAAAGCCATTGTGGGAAAAAGCTGAGACAGAGAAGGTAAAAGATGATAATGAGATAAACAGCAGTCCCTCTGAGATACCAATAAATGAAGGTTCTACTTCTATCCAAAGTCCTAAAGATAATACAGTTCCTCAGCAAGATGAATCAGAAGCAACTCCAGAAGTTGAATCTGAACAAGAAAATTCTGCATCATCAGAACCTGAGAAGACTTCGCTTTCATCTGATCAGGCAAAACCTACAGAAACAAATGCGAGTAAGCTTTCAGCGGCCGCCAAACCATTCAGTCCCGGAACATTGTCCATGTCTCGCCATATAAATCCAGTTTCCCTCACAAGCACATATGATGCAAACGGTAGTCAAGGCATACTTGTCGAGCCCGTGCTTCCTCCTGCAGCTGCCAGAGTCCCTTGCGGGCCGAGATCACCTTTGTATTACCGAACCAACTATACTTTTCGCATGAAACACAGTTCTACGAAAAGTCATACCCCTATCAAGGAAAGAAGTCTATCCGGGGCACCAAGAATCATGAATCCACATGCACCTGAATTTGTTCCTAGAAATGCTTCTCAAACAGAAACTAGTGATGCCAAGAATAGTTCTCCAAAAAGAACTATGTCTGAATCTGAGAAGTCAGAGATAGCAAGACAAATATTGCTAAGTTTTCTAGTGAAATCTGTTCATCAAAATGTTGATTCTGTGGATGAGCCTAAAGTTATTAATGAAGGGAAGGTTGAGAATTTGGAAAGTTCTGATGAAGTAGCTAAAGACAGTGCTGTCATAAAAATTATGTATGGAAGTGAAGAAAAAAATAAGACTGTTCTTAATTCCAGTGATAGTGAAGAGCAAGAAATAATTGATGTAAAAGACAGTGAAGGTTTTGTAGTTGTCACAAAGAGGAGAAAAAGCAGACAGAAAGTCACAAATGGAGTTCCGGAATTGTATAACCAGACGTCAATCTGCGCTTCGGTTCGCTGA

Protein:

>Am05G003000.1
MAPRSTKGKSNKAKAEKKKKEEKAVAPSLVDITIVTPYDSQIVLKGISTDKILDVRRLLAVKVETCHFTNYSLSHEVKGQKLNDRVEVVTLKPCVLRMVEEDYTEEAQAVAHVRRVLDIVACTTRFGKPKRSLLSPDTKPKKNGKAPNFNKTNLSPPATPNGESRVGSPMSEPPASPISDNVGMVAIHPTPKLSNFYEFFSFSHLSPPILHLKKCELKDEDDRRKGDYFQLQVKICNGKVIEVVCSEKGFYSVGKLSLQSHTLVDLLQQLSRGFANGYGSLMKAFSERNKFGNLPYGLRANTWLVPPSIAESLSTFPSLPAEDENWGGNGGGQGRNGEYDLRQWATDFAILASLPCKTEEERVIRDRKAFLLHSQFVDTSIFKAVAAIQHVLEAKSNVKNEVNSSLGSVLHEDHVGDLSIVVKRDIQGGNRKVDDSTPNESNAHEEVVRKNLLKGLTADESVVVNDTSSLAVVVVHHCGYTATVKAVGNVNARKPKVQDIEIDDQPDGGANALNINSLRILLHKSEAESSEGTLTSQSNVDDLDASKYLVRKVIQECIEKIKEEPSVSERSIRWELGSCWMQHLQKQETTTDNSSNNKERNDIEQAVQGLGKQFKLLKKREKKPINLDGEDSRENGNVNVDADKVEPNNDELSSSSELEKLLSEDAFLRLKESGTGFHLKPVDELINMAHKFYDEVALPKLVTDFGSLELSPVDGRTMTDFMHLRGLKMRSLGEVVKLAENLPHIQSLCIHEMITRAFKHLLKAVIASVDNVADLPSVIASTLNFLLGGCRTEDTDQTLRDDHHLRIQWLRLYLSKRFAWTLNDEFQHLRKLSILRGLSHKVGLELFPRDYDMESSKPFGKYDIISLVPVCKHVGCSSVDGRNLLESSKIALDKGKLEDAVNYGTKALAKMMAVCGPYHRNTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHIELALKYVNRALFLLHFTCGLSHPNTAATYINVAMMEEGMGNVNVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLKILQAKLGSEDLRTQDAAAWLEYFESKAIEQQEAAKNGTPKTDTSIASKGHLSVSDLLDFISPDNDSKANDTQRKQRRAKVLPVSDNNHQEHDDAVADDVILVDNTKDATTMIDGNVEETNGTHDSKELKETEEPKENGDLSRHTPVTSEAVYETSSDEGWQEANTKGRSANAAKRKSGRRQRPHLSKLSINNSDNYIYKEGGYRNDITSLPQKGVPKVTSDISSPARQSKTRNVTLDNDSVNHSTKAMLSKISSPASLSSLASKSISYKEVAVAPPGTILKPLWEKAETEKVKDDNEINSSPSEIPINEGSTSIQSPKDNTVPQQDESEATPEVESEQENSASSEPEKTSLSSDQAKPTETNASKLSAAAKPFSPGTLSMSRHINPVSLTSTYDANGSQGILVEPVLPPAAARVPCGPRSPLYYRTNYTFRMKHSSTKSHTPIKERSLSGAPRIMNPHAPEFVPRNASQTETSDAKNSSPKRTMSESEKSEIARQILLSFLVKSVHQNVDSVDEPKVINEGKVENLESSDEVAKDSAVIKIMYGSEEKNKTVLNSSDSEEQEIIDVKDSEGFVVVTKRRKSRQKVTNGVPELYNQTSICASVR*

Promoter(3k):

>AM05G003000.1
AAACGAAACATAAGGGACCAAAACGGACCAAAAAAAAGATAAAGGACCAAAGTGAAATCTGGAGCAAAGATAAAGAACCAAAAGTGCTATTTAGCCTATTAATTTCTACTATTGTTTTTGGACAGAAAGATTCACAATTTTGGAAGCCGGATTATATATTTATATATATTATTTTTTATTTTTTCGGGTTAAATATGTTTTTGGTCCCTACAAAATCGAGTAGTTCTAAGTTTAGTCCATACATTAACGAAATAGGTGTTTTGGTCCCCATCTTATTTTTCTGTTTTCATTATTAGTCCCTGAGGTTAAATGATGCTGACTGGGCTAACAGAATACGTGGCGTCGCCTACGTGGCACAATTAAATGATGTGTCATCCTTGTGGTTATCTAATTAACCATGTGCTTTTTGTTTTGTTTTTTTTATTTTCTGACTAGACTTTTCCATATTTAATTTATTTATTTATTTATTTGTTCTTATTCTTCCCCAGCTAGCTTCACGGAGACCACAGAGAGATGGAGGAAAACCCTTCTTTTCCTCTAATTCGTTCTTCTTCCCTACACCTCGGCCAACCTCAAAACTTCACACACCTACACGAAATCGTCGCCTGAGTCCGATTTATCGCGTTCTAATCCTTCCCTTCAGCAACGTGAAACTACATGGCCACCACCGTTGGGAGCACTTCCAGTCACAATTAGCTTCTCCTGCCTTAATCGTTCCCTCTCTCCTTTTTGGCACCAACAGTAACACTTCACTATGCTTCCTTTTTTCATTGCCACGGCGAGGCTCCAAAATCCCCAATTCTGAAATTGCGTCTATGTTAGGAAAGAGAGAGAGATTTGTGAATAATCATGGGAAAGAAAAGAAATATAATGATTGGAGTTCGTATCCATGGCAGTGACTTCTTTCTAGTTGCAAACGATTTTAATTGTTGGGGAGAGAGATGGCGAGGCTACTAAAATCCCCAATTTTGATGTTGTAGATTTTTTCTTTAGATCTGTCTCAGGATTTGATTCTTTCTGTTTTGGTTCTAGTTTTGGTGGTGCTCTTCCAAAGTTCTGGTGGCGTGTGGGCAGCGCTGTTATACGCGAGGGAGGGTGTGGTGGTCGGAGAACGAGAGGGAGGTGTAACAATGTGAGGGAAGAAGACCATTTAAAAAAAACAAAAACTCAATAAAATAGAGTAAAATAAAAAGGAAAAGCCACATGGATAGAATAATTGACATGTGGATGCCATGTCAGCTAAAATGCTTGTGTGGCAATGCTGACTGGGTCTTCTGTTAGTCTAATTAACGTCAGACTAATAATGAAAACGGTAAAATAATATGAGGACCAAAACGCCTATTTTCGTTAATGTAGGGACTAAACTTAGAAGAACCCGATTTTGTAGGGACCAAAAACATATTTTACCCAATTTTTTATTGTTGAAAATAAGGGGCTAAAGCCCCAATGCTTATTTATGCAATAGTGAAATTAGAGGAATATAGAATAATAAATAATAATATGTAGGAAAAATTACACTAGAGGTCCTTTAAGTTATTTAATTGTAACAAGTTAGTCCTATAAGTGTTTTTCGTACCACTTAGGTCCTTTAAGTTACATAATGTGTACACCGTTAGTCCTTTTTTTATTTTTAGTTACAAAAAACCCAAGTTTGCACTAATAGAGATGCGTGGCCATGACGGAGTCTACATGTCATCTATCTGATGACAATTTAGTCATTTAAAACTACTGTCATGTAACAATTTGATACTTTCAAGTTTAAAAAAATGGACGTGCCATCTATCTTCTTTTTTATTTGTGTTAAAAGGACCATACTACTAATGGTTCAAGTACCGGAGAGCATGTACACCCCTCCCCCCAAACCCAAAAAAGGATGTCTCAACACTAATGACAATGATGAACCACACTAATTTAAACTAAAGTTTGACTCCACTATAATACTAAATCTTGACCAATAGTACTAAGTGCACAGATCCTCTACTGCGCGCAGAATGGTCTTACGCTAGCAGTGATTGTTAGATCTAGCGGTCCCGACTGGCGTAGGACCCTTCTGCACGCAGCTGAGAATCCAGATCCATAGTAGTAATCAGCACTTCTAACAACACCGACGTTTTCTTGATGAAATCAAACTAAAGAAAGTGTCCACTATCTTTGTTTTTCCCAATGATAGGGAGCATATAGAATACAGAACACAATGAATTTTGACTAAATAGTAAATAACAATTGCTAACAACCGATGATAAAGTGACAAAGGATTATTGGTGATTGAATTTCAATAATACACTTTAGCGATTCTGTGTATTTCAAAAAATCAACCGTCCACAATAACTCAAAGGCAAAAACATATGATAAAACAAAAAATACATCTGCCACAAAAAGTTCATCCACGTGGCATTAAATCAACGGTGAATCTCTTTCTACCAATAACCATTGCCCTGTTTTGTCTTTAGCCTCAGCTTAAGTGCATGGGCTAATAATCCAACCTCTCATATAAGCTAGGTTCTTCACATGCTTCCACATATAAAGAGAATGAGAGAGAAAAAAAATAAAAATTAAATTTTTATAAAAAAAGAAAGATAATAAAAGAGAGAGGAAGAGAGAGAAGGGTTATCATATCATATCAGCTTATTAGCAACAAGGAGAGGCCAGAATTGCTCTCAAATCCAGAAAAAGGTTAAAAATTTGAAGACCCTTATCCTATCTTCTTCTCAATTCAACACAATTTACAATACATTATATCACACTCTCTTCACAAATATCAAATTTTCTCTCTTCTCTAACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATTTTTTCTCTTCATTCTCTTTCTTTGCTTTTTCTGTCTTCCAACTTCATCATTCACTCAGTGATTGTTTTCAGCATTCAAAATTGGAATTGTTTTCTCCTTTTTTTTTTGTTGTGTAACTTTTTTATCCAAATTCTACTTTTTTGTTCTTTGGCAGTGCCAAAAGGGTATTCAGAAAATAAAAAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13424.9	TPR_12	892	952	4.80E-28
PF13424.9	TPR_12	922	992	4.80E-28
PF13424.9	TPR_12	1006	1080	4.80E-28
PF12807.10	eIF3_p135	710	852	2.60E-24
PF13374.9	TPR_10	922	963	1.80E-18
PF13374.9	TPR_10	1006	1046	1.80E-18
PF15044.9	CLU_N	49	120	7.70E-11

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005737	cytoplasm	Cellular Component
GO:0003743	translation initiation factor activity	Molecular Function
GO:0006413	translational initiation	Biological Process
GO:0003729	mRNA binding	Molecular Function
GO:0016740	transferase activity	Molecular Function

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR019734	Tetratricopeptide repeat
IPR028275	Clustered mitochondria protein, N-terminal
IPR027523	CLU domain containing protein
IPR025697	CLU domain
IPR033646	CLU central domain

trEMBL

trEMBL term	Description
A0AAN9QVI0	_

SwissProt

SwissProt term	Description
REC3_ARATH	Protein REDUCED CHLOROPLAST COVERAGE 3

KEGG

KO	Description	Enzyme
K03255	protein TIF31

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G15290	Tetratricopeptide repeat (TPR)-like superfamily protein
Medicago sativa L.	MsG0280008935.01.T01	_
Oryza sativa L.	LOC_Os04g55230.1	tetratricopeptide repeat domain containing protein, putative, expressed
Cucumis sativus L.	Csa016384	_
Glycyrrhiza uralensis Fisch.	Glyur001041s00027448.1	_
Codonopsis lanceolata	Cl_chr02_14910T	_
Arachis hypogaea L.	AH09G01160.3	Protein TSS like

Expression pattern