Gene detail

Detail information of Am05G002640.1 Annotation

Gene ID	Annotation
Am05G002640.1	DEAD/DEAH box RNA helicase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G002640.1	mRNA	Chr05	17230054	17234277	-

Sequences

CDS:

>Am05G002640.1
ATGGGTGAATTGAAAGACACTGAAGCTTACGAGGAAGAGCTCATCGACTATGAAGAAGAAGATGAAAAGGTTATCGACTCTACCAAACCCGCGACTGAAGCCGTCAAGAAGGGTTACGTTGGGATCCATAGTTCGGGATTTCGAGACTTCCTGTTGAAACCAGAGCTTCTTCGAGCCATTGTAGATTCGGGATTTGAGCATCCTTCAGAAGTGCAACACGAATGCATCCCTCAAGCAATTTTAGGAATGGATGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTGCTGTCAACACTTCAACAAATTGATCCTGTTCCTGGTCAGGTTGCGGCTCTTGTTCTTTGCCACACAAGAGAACTAGCTTACCAGATCTGCCACGAATTTGAGAGGTTCAGCACATACCTTCCTGAGATAAAAGTTGCTGTTTTCTATGGTGGTGTTAATATCAAGATTCACAAGGACTTGCTGAAGAATGAGTGTCCCCATATTGTTGTTGGGACACCTGGGAGGATTCTTGCTCTGGCTAGAGATAAGGACCTTGGTTTAAAGAACGTGAGGCATTTTATACTTGATGAGTGTGATAAGATGCTCGAATCACTTGACATGAGAAGAGATGTTCAAGAAATTTTTAAATTGACTCCCCATGATAAACAAGTGATGATGTTTTCAGCTACACTCAGCAAAGATATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAAATATATGTAGATGATGAGGCCAAATTGACTCTCCATGGTCTTGTTCAGCACTACATCAAATTGCAAGAGTTAGAGAAGAATCGTAAGCTGAATGATCTTCTTGATGCCCTGGACTTCAACCAAGTTGTTATTTTTGTCAAAAGTGTTAGCAGAGCAGCCGAATTGAACAAATTGCTTGTTGAGTGCAACTTCCCATCAATATGCATACATTCTGGAATGTCACAGGAAGAAAGGTACTACCTCCTTCTCATATGTATTCATGTTTTTAGCCTTTTGTTTTTCTTCCAAAAACCATCCATGTCTTACAAATTCCAAGTCTTATTAATTTCTCTTTCAAATATACCCTTATTTATGTAA

Protein:

Promoter(3k):

>AM05G002640.1
ATGAAACAAAATGAATGAGTAAATATGCATGAAATAAAATAAAATAATTAATTTATGTTTTGTCGAGCGGGTTCGGGGCGGGGACGGGGTGGGTATCGACATCCCCGAACCCAAACCCGTCCCCGGTCAAAGCGGGTTTTCCCCGTCAAACTCGGGGCGGGGTAGGGTGGGTACCCACGGGTTCGGGTTATGTTGCCATGCCTACATTTTTTAATTGATATATTAGAGGTGCAGTGGAATTAAGTTTTTACCCTTTTCTATGCATAAATAGACTCTCGAACCCAAATTCATTCAAAAAAGACAAGTCTTTCGAAACAAAACAAAAAAAGGTTTTTCTAATATTTTCCTAAAATAAAGTTTGGTGGCGACTCCATTGAATTCAATCAAGGCTCTTCGTCGACGCGAACCCGTTTGCGACAATTAATAAAGGGAAAACCAGATACGATACAAACCAAAGAATGATTTTGGGGAAATCACTTTTGGGAATCGAAAGGGGTCAGATATTAGGATTTGTGGGGAGTCAAATTAGGGAAGAGTGCTGCATGCAATAAGGGATTTCATTTCCGATTAGTTTACAATCACGAGTAAATAACAATCTCAATTACTAACTCATCCATTTAACGTCGGTCAAAGGCAACTGACGCAAGCGACGTAAAATCCATTTTTTCTTGTAGTGTAGGTGGTACTCTGAACACAATTCATATTGCTTACTGACTACCAGATATTAGGGAGAACCACTTACATTTCAAACAATGAGAATGAATAATAATTGTGAAATTAAATATCTTTGTGAACACTAATAATACCCATGAAGTGAGGATTTTTTTTGGGTGATTCCATGAAGTGAGGATATCAAATGCAATTATTAAACCAACACCGTTGACCCAGTGACATAATTCCCTAGGACACGAGGTCGACCCGGGGCTCCCAGGTTCGATTCCTGCAGTGGACAAACTCGGTGTTGGACAATGCGAAATTTGATCCTAAGCACGATTAATATTTCATTGAAAGTGTTGGGACACTTCGTGGGAGCTAGCAATAGTCCGAGCCAAAAAAAGTCAAATGCAATTATTAGGAAGCAATCCATGAGTTAACAATTGGAATTGCATTTATGATAGATATAGATACAGATATATAGATATAAATCTAGATTAAATGAAATCACATTCCATTCAACTCACGTTTAACCAAAATCAACTCTACCAGAATCAAGTAAGAACACTCTTTTTTTGTTGTCAAAAATATGAGTGTTCTTACTTGATAGAGATGACATAACATATCTCTCTATTTCAATTAAAACCCTTTTTTCACTTAATATGATTTTTTAAATAATCATCGCTTCTAAGAGTGTTTTATATGTTGTTATTACATTTTAAAAAAACGAATCTAAAATTTTTTTTTACTCAAAAATCTAAACAATTTTTTAAAAATTATTTAAATGAGAAGCTATTTTAAATAGGTTATTTTCAAAATTATTTTCATTAGATGAGAAATTATTAAAAAATATAATTTTTATTATGGCAAACAAAAAAATAATTTTAAAGAATTTTTAAATTATCGAATATCAAGTTTTTTCAATCTATAACAGATAGGTTTAAATATGTTTTTGGTCCGTGCAAATATACAATCTTTTGATTTTAGTCCCTGCAAAATATTTTTTTTAAATAGATCCCTACAAATGCCAACTTTTTCGTTTTAGTCCTTCTGTTAGTAACTCTGTTAGTCTAATGGTGATGTGGCTAACAGACCTCCTCTCTGGCTATGCCACATATTTAGTTTTATGTTTATTTATTTTAATATTCCTTATGTGTAATTACACTAAAAAATATTATTTATAAAAAAAATTAAAATCCAAAAAAGTGCCCTAATTCCAAATCCCAAACCCAGTAAGACAAATTGGTTGCATTCAAATCTCAAACCCCGAAAGAACCGTGAGGTCATGGAAAGACAAATGCAATGGTGACGTAAAGAGATGCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAGGGACTGGGGTTGCGAAAAATGGAGGAAGCTGGATATCCTTGTTATTTGAAAGTGAACATGCATTTGGATGGATTGATTGAGAAAGTGGAGAGATATTTTCGCTACAGAAGGTTGCAAAAAGGCAAAAAAAATGGAGGCGACAGTGGTAGCTTTGGACGGAGATGTACGTGCTTGGTTCTTATAGTGGTAGGAATGTTATGTGAACGAATCTTAGGAAGTAGGATTCTAAGATGCAATGTTTCAAAGATTTCAATGATTTTCGACATGAGGCCCATTTGAAGCCCTATGATGCCATTGAAACATGAAAATCTGTAAGTTAGTTCATTCCACAATTTGAAAAAACAGTAGGGGCGATTAACACCACCCTCAACATCATCTCTCTGATATTGATTTAAGCTTGAATTAATTGAATCTAGAAATAGAAGATGAACCCTACTTTTTAATTTGGGAATATATCTTTTTTTTACAAATTTGGGATTTTATCCACAACTCAGTTTTTAAAATAAAATAAAAATAAAAATAATGAAGTGGCAAAGCCAACTTAGACACAAGGTTAGACACAAGGTTGTCATATCAGTGTTTTAGACTTAAAAAGATATTTAAGCCTAAGAGAGAATAACAAATGGGGCGGCGTAATATGAACGTTGGGCATCCGGGAGCTGAAACTGAAAGGGTACTTTCGTCCATTCATAGAGTGGCTGCACACTCTATATGTTATCTCGCACACAGTTCCTTTTTGTTGCTTCTCTTTTGTTTCTGTTCCTAAAAACCCAGCAAGCAGATCTAGGGTTTATTTTGGGGAAGCCTCAAATCGTTCGCGCTTTCGAAGGTTAGCTACTACTATTAACTCTCTCTCTCTCTCTCTAACCAATTCAATTTCACTCCAAGTAAATCTCATCAACTGAAACTGAAAACCCTAACCCTATTACACAGAAAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00270.32	DEAD	70	235	3.60E-37
PF04851.18	ResIII	86	232	4.50E-06

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0016787	hydrolase activity	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0005515	protein binding	Molecular Function
GO:0003697	single-stranded DNA binding	Molecular Function
GO:0003690	double-stranded DNA binding	Molecular Function

InterPro

InterPro term	Description
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR011545	DEAD/DEAH box helicase domain

trEMBL

trEMBL term	Description
A0A072UHT1	_

SwissProt

SwissProt term	Description
RH56_ARATH	DEAD-box ATP-dependent RNA helicase 56

KEGG

KO	Description	Enzyme
K12812	ATP-dependent RNA helicase UAP56/SUB2	[EC: 5.6.2.7]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G11200	DEAD/DEAH box RNA helicase family protein
Medicago sativa L.	MsG0480018366.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa006097	_
Glycyrrhiza uralensis Fisch.	Glyur000468s00019641.1	_
Codonopsis lanceolata	Cl_chr03_18450T	_
Arachis hypogaea L.	AH19G02430.1	DEAD-box ATP-dependent RNA helicase 56 like

Expression pattern