| Gene ID | Annotation |
|---|---|
| Am05G002420.1 | Pentatricopeptide repeat (PPR) superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am05G002420.1 | mRNA | Chr05 | 16636537 | 16640909 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 241 | 288 | 3.90E-99 |
| PF13041.9 | PPR_2 | 343 | 389 | 3.90E-99 |
| PF13041.9 | PPR_2 | 443 | 489 | 3.90E-99 |
| PF13041.9 | PPR_2 | 543 | 591 | 3.90E-99 |
| PF13041.9 | PPR_2 | 645 | 688 | 3.90E-99 |
| PF13041.9 | PPR_2 | 745 | 793 | 3.90E-99 |
| PF01535.23 | PPR | 243 | 273 | 7.30E-91 |
| PF01535.23 | PPR | 344 | 370 | 7.30E-91 |
| PF01535.23 | PPR | 546 | 576 | 7.30E-91 |
| PF01535.23 | PPR | 647 | 677 | 7.30E-91 |
| PF01535.23 | PPR | 748 | 777 | 7.30E-91 |
| PF12854.10 | PPR_1 | 339 | 370 | 6.40E-51 |
| PF14432.9 | DYW_deaminase | 961 | 1053 | 7.20E-34 |
| PF20431.1 | E_motif | 863 | 925 | 6.30E-20 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0006457 | protein folding | Biological Process |
| GO:0051082 | unfolded protein binding | Molecular Function |
| GO:0004519 | endonuclease activity | Molecular Function |
| GO:0016887 | ATP hydrolysis activity | Molecular Function |
| GO:0005524 | ATP binding | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046848 | E motif |
| IPR032867 | DYW domain |
| trEMBL term | Description |
|---|---|
| A0A1S2XBW0 | _ |
| SwissProt term | Description |
|---|---|
| PP307_ARATH | Pentatricopeptide repeat-containing protein At4g13650 |
| KO | Description | Enzyme |
|---|---|---|
| K23541 | Ca2+/H+ antiporter, TMEM165/GDT1 family |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT4G13650 | Pentatricopeptide repeat (PPR) superfamily protein |
| Medicago sativa L. | MsG0780039471.01.T19 | _ |
| Oryza sativa L. | LOC_Os12g36620.1 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa010076 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur001001s00027981.1 | _ |
| Codonopsis lanceolata | Cl_chr04_50390T | _ |
| Arachis hypogaea L. | AH13G57950.1 | Pentatricopeptide repeat-containing protein At4g13650 like |