Gene detail

Detail information of Am05G002000.1 Annotation

Gene ID	Annotation
Am05G002000.1	Coatomer, beta' subunit

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G002000.1	mRNA	Chr05	14518173	14535768	+

Sequences

CDS:

>Am05G002000.1
ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTAGCGCAAAGATCAGAAAGAGTTAAGTCTGTGGATCTACATCCAACAGAACCATGGATTCTAGCAAGTTTATACTCCGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCTAAGTCTTTTGAGGTTACCGAGCTACCAGTTAGGTCAGCCAAGTTTATTGCACGCAAACAATGGGTTGTTGCGGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTCGAGGCACATACAGATTACATTAGGTGTGTGGCTGTTCATCCTACTCTTCCTTATGTGCTGTCGTCATCTGACGATATGCTCATAAAGCTTTGGGATTGGGAAAAAGGCTGGATCTGTACCCAGATATTTGAGGGACATTCTCATTATGTGATGCAAGTGACATTCAATCCTAAAGATACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTGGGCTCTCCTGACCCAAATTTTACGTTGGATGCCCATCAAAAAGGAGTGAACTGTGTTGATTATTTTACAGGTGGCGACAAACCTTATCTAATTACTGGCTCGGATGATCACACTGCCAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACTCTAGATGGTCACACCCATAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGCTCTGAGGATGGTACAGTGCGCATTTGGCATTCAACAACTTACAGGCTCGAGAACACATTGAACTACGGTCTTGAAAGAGTTTGGGCTATTGGATATCTGAAGGGTTCACGTCGGGTTGTGATTGGCTATGATGAAGGTACTATTATGGTCAAACTTGGTCGAGAAGAACCTGTAGCTAGCATGGACAACAGTGGGAAGATCATTTGGGCTAAGCATAATGAGATTCAGACTGTGAATATAAGGAGTGTAGGAGCAGATGTGGAGATTGGTGATGGAGAAAGATTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCACAAAGTTTAAGGCACAATCCAAATGGGAGGTTTGTTGTTGTTTGTGGGGATGGCGAGTATATTATATACACTGCTTTGGCATGGAGAAATAGGTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTACGGATGGAGAATATGCTGTAAGAGAAAGCACATCAAAGATTAAACTTTTCAGCAAAACTTTCCAGGAAAAGAAGAGTATCCGACCGACTTTTTCAGCTGAACGAATATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTAATTAGGCGCATTGATGTTAATGTGAAAAACCTCTACTGGGCTGATAGCGGTGATCTAGTGATAATTGCCAGTGATACATCTTTCTACATTTTAAAGTACAATCGCGATGTCGTAGCTTCATATTTGGATAGTGGAAGCGCTGTGGACGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTTCATGAAATGAGTGAACGTGTCCGGACAGGGATCTGGGTTGGGGATTGTTTTATCTACACCAATTCTTCTTGGAGGCTTAATTATTGTGTTGGTGGGGAGGTAACAACAATGTTTCACTTGGACCGCCCAATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGATCTATTTAATCGACAAAGAATTCAATGTTGTCGGATACACACTGCTTTTAAGCTTGATTGAATACAAGACTCTTGTGATGCGTGGTGATTTTGAAAAGGCAAATGAAATTCTACCAACAATTCCAAAAGAGCATCATAACAGTGTGGCTCATTTCCTGGAATCACGAGGGATGGTAGAGGATGCTCTTGAAGTTGCTACTGACCCTGACTACAGGTTTGATCTAGCCATACAGCTTGGAAGATTAGAGGTCGCAAAGGCTATAGCTGTAGAAGTGAAGAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAGGAGTGTTTAAAATATGCAATGGATTTGAGTGGGTTGCTGCTGCTATATTCTTCTTTAGGAGATGCTGAAGGAATATCAAAACTTGCAACTCTTGCTAAAGACCAAGGGAAGAACAATGTTGCATTCCTTTGCTTATTTACGTTGGGTAAAGTTGAAGACTGTCTTCAACTGTTGATAGAAAGCAATCGGATTCCAGAGGCTGCTTTAATGGCTAGATCATATCTTCCAAGCAAGGTCTCAGAGATAGTGGCAATCTGGAGAAAAGATCTCAGCAAGGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAGTATCCTAATTTATTTGAAGATTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTGTAGAAACAAGGGGTGTTTACCCTCCTGCAGAGGAGTACGTCAACCGTGCTGATAAATCACACATCACCCTTGTTGAAGCTTTCAGAAACATGCAGGTCGAAGAAGAGGAGCAGCCTCTTGAGAATGGGGACTCTAATCACGAGTTGACTGAAGAAAATGAAGAAGAGGATTATACAGAGGAGGGACACGAAGAACAAAATGGAGAGGAAGGAAGCCAAGAGGAGGCAGTTGTGGTGGATGCTGATTCTACCGATGGTGCAGTTCTCGTTAATGGGAATGAAGCTGATGAAGAGTGGAGCACGAATAAAGGAGAATCCCCGTCAGCCTAA

Protein:

Promoter(3k):

>AM05G002000.1
ATCATAAAATGGCGCCAAGAACTTGCACATTTTTTGAAGTCTTTCCCACTCTTCCTTTGAAGGATTACATGTGTAATTTGAATCATAACAATGAAGATTTTCAAATGCACGTTGGTATTTAAGAGCACTTTTAAGCATCAAATAAGTGGAGTTCCATCTTGTAGGCACATCTTTAGCCAACCCACTTGATACATCAATGTTGCCAACTGAATCAACACATTACTTAAATTTTACCATCCTACTCTCTGAACCTTTCACATGTGTGATGCTTTCCCTAATCTTAGACAAAGCACCAGAAGCTACTTTAAGTCCCTCTTGCACAATTAGATTTAAGATATGTGTAGAACAACAGACATGAAAGAGTTCCCCTTCACATAACAACCACTTTTGCAAGGCTAGTTGACTCTTCAAAGTTTGTTGCATGACATCATTTGCAGAAGCATTATCCAAAGTAATGCTAAAAACCTTCTTCTCTATTCCCCAATCAGTCAAAAACCCAATTGTTTTCTTACACAACTCAAAACCAGTGTGAGGGGGAGGCATGTGACAAAAGTTGAGGATTTTACTATTTAATTTCCAATTTCTATCAACGTAATGAGCAGTTAAAGTAATATAACCGTCGGTATTAATTGATGTCCATAAATCGGAAGTTAGAGATATCCTACAAGGAGTGTTGGCCATTTCTTCCTTAATTTTTGCCTTTTCCCTCATGTATATTTTCACAACATCTGCCTTGGTAGTATTTCTATTGATAGGAATGTAATCAGGGTTCAAATATTGATGCCAATCTGTAAGCTCATTATACTCAGCAAATTTAAAAGGAAGATCCCGCTTAATAATTAGCCTAGCACAAAATTTACGAGATACCAAATTATCAATCTTTGGGGATTTTAGCTTTCCTTGCATGTCTACCATCATCTGACTAACATCTTCAAATTTATGTTTTTTACAATGAACAAGATGCCGTTTGAGAGTAGTAGTACCATTTAGTTTTCCTCCGGCTGCAAATGATTGACCACAATCATTGCATTTTGCTCTTCCCCTTCCCTGATTGTCCAACTCTTCTTCTTGAGTAAAATGTTTCCACACCATGGATGTCAGCCTCTTGTTCTTCTTGATTGTAGTAGGTTCCACTGACTCACACTCTTCTCCAAAATCTAAGTCCAAATCTTCATCATCATTCTCGTCAATTGGAGCCAAGAAATCCATATCAAATCAAAGTCCTAAAACACAATAAATTCAATTTAATTAACAAAACATATTCTAATAAATAGTATAGTATAAACTACTGTAAAGTATTGTAGCCTAGCAGGTGTCATGCTGAAAATTCAAACTTAACATTGCCTACAAACTAAATAAGGACAAACTTGCAATATAATCATTAGAGTAAAGGTTCATTAATTCTCTATAGTCTACTACTACTTCTATAAAGAACAAAAAAATAATACAAAATAGAGGTACTTTTTTTTACTAGAGTCAAAATAAATCTACTACAAATTAAAAAACTTAAATACATCTTAGGCTCACAAATACAGCAATCAAATAATCATAAGATTTTAAAAGAATGATTGAGGAAGCATGTTTCAATAGTGTGATTGAGGAAGCATGTGTCAATAGTGTGATTGGTTCGGTTGCAATGAGCGCAAAATATATTGCCAGGAGTCATTGATGTAGGTACAAAGAGCAAATCCAGTAACTGTAATAATCAGCAGCCGACAACAATTAGCAGTAATCCAATAACAAGCAACAATTCCAGTAGTGCAGATATGGAATCAATTGGCCAGAAATAACAAAATTACAAAAAAATGACAAAATCACACTTTGGGATCTTAACAAAACCGAATAGCGCCGGAAAGTACAATCAATTTGATGAGATAATTGGTGACTCAAAACGTGAGTCAATATATGGCACAGATCAAAAGATTGAATACACAAACAATTATCAAAATTGTATTTATTGTTTTGTGGACCAATTTGACAAAAACAGGCACCAATTTCCAGCGAACGAAGACATCCCATGCATCAATTTTTTTTTTGTTCAAGAAATCTAGGAACAAAACTTGTATTATGGAGGATACAGAGCAAACTGTGATTTAGAAATGCGAACCAGGGAAACGTGAATCAGAACCAAACAGTCCAGAGAACAAAAAAATGATCCAGAGAACAAACCGTGATTCAGGAGATAATTCAGCAGAAAAACGTGATGCTGCACAAGACGATCTAGAGATAAATCGCGTTGGATGATTCAGCAATCCAGAAAGCAAAAACGCGATTCAGATGTTCGATCTTGCAGAGAAGAAGAGTTCAGGAACACCGTTGAAAGGAGATGAGACGCCGTTGAAAGGAGAAGAGCGTGTTTCGTTATTGTTTGTACAGTGAGACGTGAAAGAAGGGGAAAGTTGAAAACCTAAAGTGATTCTGTTTAAAGTTTTTTTTTTAAAAAAAACGGGCCGGCGGGTTGACCCGCCTCGTTATTGCTTTAGCTCGCGGTTTTTTTTTATGGCGGGGCGGGTTCAGCGGGTCAGCGGTTCCAATACCCCAGCCCAACCCGCCTTTTTTGGCGGGTCAGCGGCCCGGCCCGGCGGGCCAAACCCGTTTTGCCATCCCTACATGGCTCCATTGTTGGTTGCAATGACAATTTCAGCATGCCGCCTCCCGGGTTTGAACCCAAATACGAGTCGTGATATGTTTGGTTAAATCTCCACCGTTGATTTTATCATCTTCGTTTTATTACAGACCATTGAGTCCGCTACGCAAAAGGTCACTGACTCACTGTCCCCCCAGTGGCATTATCGTAAATCCGTGCCTCAACTGCAAGCACCACTCCCCATTCTTCTTCCCCATCGATTGTCATATTTGCACTCTGCTCTGTAATCCCCCTTACCTTCTCCCCCTCTCCCCCTCCCTCTGAGCCCGATCTCTTAGGGCTCTTCGAATTCCGCCCCTAATCTTCGACGAGTTTTCTCAATCAAACCTAGCTACTTCCTTCAACCTACAGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04053.17	Coatomer_WDAD	319	763	3.20E-165
PF00400.35	WD40	91	127	8.50E-40
PF00400.35	WD40	177	215	8.50E-40
PF00400.35	WD40	220	256	8.50E-40

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Biological Process
GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	Biological Process
GO:0006886	intracellular protein transport	Biological Process
GO:0030117	membrane coat	Cellular Component
GO:0000139	Golgi membrane	Cellular Component

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR001680	WD40 repeat
IPR020472	G-protein beta WD-40 repeat
IPR006692	Coatomer, WD associated region
IPR016453	Coatomer beta' subunit (COPB2)

trEMBL

trEMBL term	Description
A0A1S2YM45	_

SwissProt

SwissProt term	Description
COB22_ARATH	Coatomer subunit beta'-2

KEGG

KO	Description	Enzyme
K17302	coatomer subunit beta'

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G52360	Coatomer, beta' subunit
Medicago sativa L.	MsG0480018462.01.T01	_
Oryza sativa L.	LOC_Os02g11830.2	coatomer subunit beta, putative, expressed
Cucumis sativus L.	Csa010068	_
Glycyrrhiza uralensis Fisch.	Glyur000317s00022171.1	_
Codonopsis lanceolata	Cl_chr02_05560T	_
Arachis hypogaea L.	AH18G01250.5	Coatomer subunit beta'-2 like

Expression pattern