Gene detail

Detail information of Am04G029340.1 Annotation

Gene ID	Annotation
Am04G029340.1	CBS domain-containing protein / transporter associated domain-containing protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G029340.1	mRNA	Chr04	176922890	176930244	-

Sequences

CDS:

>Am04G029340.1
ATGGCACTCGAATCTTGGGTTCTGGGTAACCGAGTCTTCAGTTCCGGCTCCAGATTGCTTTATCCCACGAATGAAAATCGGCCAAAGAGAATGTTTTTGGGTAGAAACAGTAAATACCCATTTCCTATTGTATCCAATTGCGTTTCCCCCACAAGCTTTCTGCTTTCAAGTTATGGAACCAATGTCAGGTTATTGGGTGGAGCTCGATTGAGGATGAGGTGTATGAGTAATAACAGTGATTGTTCGCACGAGAAAAACGCTGTTCCCAAACCCAATTTGAAGTTTATACATGAAATGTTGGTGAAGAAGGGGATTATTCTAGCTGCAACTGTTTGTGGGGTGTTAGTGTTTGGATGTCCGAAAGTTTTTGCTTTAGAAGGTGTGGTGAATGCAGGATATGGTGTCATTGGACAAAGCATACTTTTGCTTAAGAGTACATGGCCTATAATGTCGAAAGTTCTTCGTTTATTTAAGGAACAAGGATTGCTACTGGCTTTGCTTTTGGGTCTTTCGGCTTTTTTCTCTCTGGCTGAGACTTCAATTACCACACTTTGGCCTTGGAAGGTTCGTGAGTTGGCTGAAAAGGAGTCTGAAAATGGTGTGTTCAGATTACTCCGAAGTGACGTTACTCGATTCCTTACAACTATACTTATTGGCACAACTGTGGTAAATATTGGGGCAACTGCTCTGGTCACAGAAGCTGCAACTGCAATATTTGGCGAAGCTGGTGTTAGTGCAGCAACAGGAGTGATGACTGTTGCGATTTTGCTTCTCACTGAAATCACTCCAAAAAGTATAGCAGTTCATAATGCCACAGAGGTAGCTCGGTTTGTGGTCAGGCCAGTAGCATGGCTTTCTGTGGTTTTGTATCCCGTAGGAAGAATTGTTACTTATCTTTCAATGGGGATGCTGAAATTGCTTGGCTTAAAAGGAAGAAGTGAGCCATATGTAACTGAAGACGAGCTAAAACTGATGCTAAGGGGTGCAGAATTAAGTGGGGCAATAGAAGAGGAGGAACAGGATATGATTGAAAATGTTTTGGAGATAAAAGACACACATGTCAGAGAGGTTATGACACCTCTTGTTGATGTTGTTGCAATTGATGCAAGTTTAAGCCTTGTAGATTTTCATCACTTGTGGGTTACACATCAGTACTCAAGAGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGCGATGGATCTGCTGGATTATGTCCAGAAGGGCGAGACTCTAGAAAGTATTACAGTTGGAGATATGGCTCACAAGCCTGCATATTTTGTACCTGATTCAATGTCTGTTTGGAATCTTCTTAGAGAATTTCGAATCAGGAAGGTTCACATGGCTATCGTTCTTAATGAGTATGGTGGAACTGTGGGAGTTGTAACTCTTGAAGATGTCGTCGAGGAAATTGTTGGTGAAATCTTCGATGAAAATGACTCAAAGGAGGAGATACAGAAAAAAACTGGCTACATTGTAATGCGAGCTGAGGGTGTATTTGATGTGGATGCTAACACATCCATTGATCAACTCTCTGAAGATTTGAACATCAAGATGCCAGAGGGTCACCAATATGAGACAGTATCTGGTTTTGTATGTGAAGCCTTTGGATACATCCCAAGGACAGGTGAGAGCATCAAGATAGTTCTTGAAAGAGAAGATGAAGATGATGACAATAACACTGATGCTGAACACCAGGATCAGAAAGAGAAGAACCAGTTTTTCAAACTTGAGATACTAGCAGGAAATGCCAGAAAGGTGAGCGCTGTTAGGTTTGAAAGGCTAAATAATGAGAGTGAAATGGAGACTAAAGACGTAACTCGCATGTTCCCTAAAATCGTGAAAAGAAAATGGAACAGTAATGAGGACTCGGAAGATGATGCAGAATATGATGGAAATACATTTGCAAAGAGATCCCAGGAACATATTTCTAATGAATTTGTTGTTGATCAGGAAAATTCTCATAGAGTTTAA

Protein:

Promoter(3k):

>AM04G029340.1
ATTGAAATCATTCCTTTCATTATAAAATGTTTATTTAAATATATTTCCGTCAGTATATTACTAAGATATAATTTTTATTTCTTTTACAATAATATTACAAAAGAAGTTCAAATGATATGTATACCCGTGCAGTGCACGGGTCATACATACTAGTATATATATAAATTCTAATAACTGTTGAATGTTATACAAAATATTAAATCTTAAGTAATTAGAATATAAATCTAATATATAATAACACAAATCTATTAACTAAATAATAATTAAATAAAGCATATTTCTATTTTTCATATAATCATAAACGGAGATTGGTTTGATTCTAAATAATAAGGTGTGGATACCTTAGAGAACCATTTAAATAATAAGGTGTGGAATGCGCCTCTAAGTATATAAGGCATATATCAAAACAGTTAGATATAAACAGCATTTGCTAGACTCTTATCAAAACAAAACGTGGCGCAGTGGCAAAGTCCTTCGTATATCACTTGGGGGGGATGCAGGTGTGATACATGTTCCCTTGCTTTCTTTCCCGTTTTTATAAAAATATGCAACCCGGTCCGGGTTAAATAGCACGGGCGGATTACCGGGTTGTGCGGGTTTCACCGGGTCATTTACATCTCCGATCTAATAAGGGGACCGAACCGAGTCCACCACCTGGTCGCGATCCGACCAGCCGGGTCGGTCCGGGTTTCACAACACTGGTTTTGTGCTTCAAACTCGGATCTGTTTTTGTCTTGTTGGGTTTGATTTTTGTTTCTTTTGAAGATTTATTTTTAATTCTTGGGTTTGTGTCAGATGGGCTCTTTAGTGTGTGAAGGTTTTGTTAGGTTTAAGAAAGGAAAGGTTACCGTAAACGAGGTAACAATTCAGAGCTGGAAATATAAGGCAAATAAGCTATGCTAAAAAGGAAAAAATAACACCTTCTCATTAATGATTTTATGATCCATTCCCTTGGTTCATTAGTACATATATAGTAACCTAGTGGCAGCTGTAGCCAGCTAGTGACAGCTGCCATTCTTATTCTCAACATCCAATGATAGCTGAGTCATTACAATAAAGAAAAAGACAAAAACTAAAGATGGGAATATAGATTAGAAAGATTTAGTGACCAAGGACCTATTTGAGAGACACATAGCATAGATGGTTCTCATTTGAGGTATTGAGTGATCCTCTTCTTCATAATTGGACTCTTCATCATCAAACTCAGTTCTTTCCACAATGTGGGCCGTAACATTTTGTTATTTTGGGTTTTTGTGGAAAGATTGGAGAAGATGGAAAGGGTGGTGTTTTTGAGTTTGTTCTTGAGGTTGAAGATGAAGATGGGTTAAGGACCAAATTGTTACATGACAAGAGTTTTAAGGACCAAATCGTTACAAAACGAAAGACATGTAGGAGGCTTGTCACGGTCACGTCAACGCTGTTAATGCCATCCAGGATTGTTTGAAACGGAAAATTAAAAAATAACGATATTTAACTAACTTAAAAACTTAATCGATAGAAAAAACATAAAGGCTAAATAGCACTTTTGGTCCTTTATCTTTGCTCCAGATTTCACTTTGGTCCTTTATCTTTTTTTTGGTCCGTTTTGGTCCTTTATGTTTCATTTTCGTTTCATTTTGGTCCCTCACGTATTATTTAATTCAATTAAAACATTAAAAACATTAAAACAATTAAAATAATTAAAACAATTACAAAAATAAAACATAAACCCATCCCCCCACCGTCCACCACCACCCACCACCGTCAACCACCACCCACCACCTCCCCCCACCGTCCACCCCTCCCCCCACTGTCCCCCCCCCCCCCCACCGCTGCGCACCCCCTCCCCCCCTCCCCCACCGTTCCCCCCTCCCCCCACCCCCCACCGCTGCGCACCCCCACCCCCACCCCCCACCGCTGCGCACCCCCTCCCCCACCGTGAACAGCGAAGATGATGAAAACCAGATCGGCGCACAGATCCATGGAGAAGGACGCGGCGGAGAAGGACGCGACGCACAGAACTGGAGAAGGATGAAGGACGCGATGCAGAAGGACGCGACGCAGAAGGATGCGACAGAGAAGGACGCGACGCAGAAGACGACGCACAGATCCAGCGAAGACGAACCAGCGAAGACGACGCAGAAGACGAACCAGCGCACAGATCCAGCGAAGACGACGCAGAAGACGACGCACAGATCCAGCGAAGACGAACCAGCGCACAAATCCAGCGAAGACGAACCAGCGCACGCGAACCGGAACCGGAAGCAGAAGATCGCATAGGATGGGGGAGTCACGGAGGTCACAGAGGGTGGCTGTGGGGGAGGGGTTCGCGGTGGGGGGAGGGATTCACGGTGGGTGAGGGTTTCACGGTGAGAGAGAGAGACAGATTGTGAGGTGGTGGTGGTTGGTGGCTGACGGTGGTTCACGGTGGTTCACGGTGGGGGAGGGGTTCACGGTGGGGGGAGTAATTTCTCTAATTTTGTTTTAATTGTTTTAATTGTTTTAATTGTTTTAATGTTTTAATTGAATAAAATAATATTAATTTTAGTCAAAACTAACGTGAGGGACCAAAATGAAACGAAAATGAAACATGAGGGACCAAAACGGACCAAAAAAAAGATAAAGGACCAAAGTGAAATTTGGAGCAAAGATAAAAGACCAAAAGTGCTATATAGCCGAACATAAACTACCAAAGGTTTGCCTATTTATATCGATTTTCACCCTCGCAACCAATCCCCACCTTCTGCGCCGAACAGAGCATTTAGCAAGTTATGCAAGTGAAGTGGTCCGTCCAAGTCCAACTCTTCTCTGCGGCCAAAGAAGATACCCAATTTCCACTCTTCCCTCTCAAACCCTAATTCCACAATTGCGCTTTTTTGCCACTAAGAAACAAAATTTCATAAAACATTCTTCGTGTATATACAGTTTTTTCTTTACTTTTCCACTTTCCTTACCATACGCCTTTCGGCATCAAAATTTGATTTTGAGTTGGAGTAGTGTTATGATTTTAGTTTTTTGGTG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01595.23	CNNM	163	339	2.90E-46
PF03471.20	CorC_HlyC	499	600	1.80E-21
PF00571.31	CBS	422	477	2.70E-12

Gene family

Gene family	Subfamily
Transporter family	HCC

Gene Ontology

GO term	Description	Category
GO:0050660	flavin adenine dinucleotide binding	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0003677	DNA binding	Molecular Function

InterPro

InterPro term	Description
IPR005170	Transporter-associated domain
IPR044751	Ion transporter-like, CBS domain
IPR036318	FAD-binding, type PCMH-like superfamily
IPR016169	FAD-binding, type PCMH, subdomain 2
IPR002550	CNNM, transmembrane domain
IPR046342	CBS domain superfamily
IPR000644	CBS domain

trEMBL

trEMBL term	Description
A0A1S2XNL7	_

SwissProt

SwissProt term	Description
Y1559_ARATH	DUF21 domain-containing protein At1g55930, chloroplastic

KEGG

KO	Description	Enzyme
K03699	magnesium and cobalt exporter, CNNM family

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G55930	CBS domain-containing protein / transporter associated domain-containing protein
Medicago sativa L.	MsG0580029919.01.T01	_
Oryza sativa L.	LOC_Os03g39640.2	CBS domain containing protein, expressed
Cucumis sativus L.	Csa021414	_
Glycyrrhiza uralensis Fisch.	Glyur000092s00007530.1	_
Codonopsis lanceolata	Cl_chr04_28200T	_
Arachis hypogaea L.	AH17G02330.1	DUF21 domain-containing protein At1g55930, chloroplastic like

Expression pattern