Gene detail

Detail information of Am04G028580.1 Annotation

Gene ID	Annotation
Am04G028580.1	translation initiation factor 3B1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G028580.1	mRNA	Chr04	175264197	175266423	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM04G028580.1
TCCTCTGTTGAAGCCTTGAAGCATGATGCCACAATTACTTTAGCTGTTACTTTGAACATTCTGTTTGATGCCATTCTGGATTGAAGGATCATCCCTCTATCTTCATGATAAACCTTGCACATGTTGTTCTTGAACACAACAGCAAGACCAGATTTCTCTTGGAGTTGCCCAATGCTTAAAAGATTGCTGCTTAGCCCTGGAATATAGTATACATCAGTGATGATTTGCACTATTTCATCCACCTCTAACTTCACACTCCCTTTTCCTTCAGTCATGAGTTTCATGCCATTGCCAAGCTTCACAGAGACACGGATCTTTTCATTCAAATCCAAGAACCACTCCTTGCAACCGCACATGTGGTTGCTGCATCCTGAGTCTAGAAACCACTCTTCTTGTTTGTAGTCTTTCACCATATCAGTACATGCCATGAGAAGAACTTCCTCTTCTTGATCATCTTCTGCGTAATTAGCTTTGTTTTCCCAATTAAGGCATTCATAACGATAATGCCCCAATTTCTTACAATGGAAGCATTCAATAGTTTCTTTATTGAATTGCCCCCTTCCTCTACCACGTCCTCCTCTCACAGTGCCTCGCCCTCTTCCCCTGTTGCCGAATCTTCCTCTGTTGGTAACTTTTAGGGCTTGCTCCTCTTCCCTTTGATCTTTCATTCTTTGTTCTTCAACAATCAGACTGCTTTGAAGAGCATCCACAGAAAGAGTGGTAACGTTGTTGGCTTGAACAATAGCACAGGCTACGTAGTTGAATCTTGGAGTCAGCGACCTCAAGATTTTTTCAACTATGGTAACTGGTTCCATGTTCTCACCATACATCTTCATACGATTAACGATTGCTAGGGTTCTTGCAAAGTAATCGTTGATGTTTTCATCGTCTTTCATTCCAAGCATCTCAAATTCTTTTCTTGCAACTTGCAATTGGGCGCGCTTTACCTTCGTCGATCCTTGATACTTTTGTTTCAGAGAATCCCAAATCGCCTTCGCACTATCTCTGTCAAGAATGGTCTCCATGGTTGTTCGATCTATAGCTTGGAACAGATAGTTCCTTGCTTTCAAGTCTTTCAGCTTGCTGTCTTCGCCTTTCTTGATTAGGTCTGGAGTCGCATCCGCGGGAGGGACGAAGATCCCTTCTTCAATCAAATTCCAATACTCTTTTGATCGCATGAGATTTTCCATGATCATGGCCCAATGTTCGTAATGTCCATCCAATTTAGGAACTGAGGGTTGAAGATACGTGATTTCCTTTTCAGCCATCTTCTTGAACTGCTTTTGCACTCACGCACTTACACACTTCACCGAGGTTCTTGCGAAATCAGGCCCTTGCGAGCTCTGATGCCAATTGTAGGATACAGAGAATTGAGTAAATGGCAAAAACTGTTATTGCTTCATTGATTCTAAGACTTTATACAAGAGAGTTTCAGTTAGATTGTAACTGAACTTTCAACCACAAAACTAATTACAACAGAATGAACTAATACAGAAAACATCAAAAGGCCTTGGGCCAACTAACTAAGGGTTCACTGGGCCTAAAACACTTTACAAGGCATAAAGCCCAATACAAAGGATCCAGCAAAGATAAAACTAACAACTATCACAGCTTTAACAGGGAACACATTAATAGCATGAATGACCGTTGGGTTGAAAATGGGGTGGTGTCCTTTAGAGATATAGAAAATAGAAAATAGAAAATAAGGATGAAAAGTGAGAGAGTTAATGGGCTGGAAGATGGGAAAGAAATGAATAAGAGCAATGACGATCGCAATTGTCATGGCAATGGGTTACTGTAGATATGTGTAAAAATGAAATGAAATGAAATGAAATGAAAAAAAAAGTGAAAATTGTCCTCCCCAGGTTGGCAGCTACATATTTTAGAGTTGGACGTTTTTTATGAAAGGGGAGGGGGGGCATCTAATGTAAGTGAAAGAATAACTAGCGCATTGACCCGTGCACTGCACGGGGTAAAAACTCTAGCTAATATATAATTGTTGTTGGGTAAAATTTGTTTCTTACTTTGTAAGATGAAAAAGCCTTGTTTAAATTTAAGGTAAGTATGAATTAAAAAAAGTGTGTAATAAAAAAAGGAAATTGCGAACTTAAAAACTAAAATAGAGTGTGTATAGATATAATCCAAGCAAATTGTTCCATACACATAACCCATAGTAACAGTATTGGTTTATAAAATATAAAGTCTAATATCTGTGAGTAAAAATTAAATTATAACTATAAATTAAATAAGAAGATTTTAAAATTGCTATCCATAGATTCTAAGAAGAAAGAAATTTAATAAATGAATTGGTAGTGACCGAATTAAATGAATTTAATAAATATTTCGAGTTTAGAAAGATAAGGAGAAGAAGTATAAAAATAAATTATTTTTTTAAAGGGTAAGAAAAATATGGTCCTAGAAAATATAATGAGAAGAAGTATAAAAAGAAATTGATTTTTTAAAGTGGTGGAATCACTAAAAGGGTGAGTTGCACGGGCCTGTGTCATGAAATTATTTTTTTTTCACCAAACCAGTTATTGTGGAATGAACTTTAAGTATTTGAATAGTTAAAAATTTTATGAACGCTAAAGTACTCTAAAACACACTGTTTAGCATCACACTTTATGTATTTGTCACGAAATTATTATTTGTTTCAACATATCAGTTATCGAGGAATGAACTTTGAGTATTTGAACAGTTAAAAAAATTTCTGGACCTAAATATACGCTGTTTAGCATCAAACTATACGTATTTTGCAGATAGAGTGGTGGAAGAGATGATAAGTACTTTGCAAGAATGGGGAAAAATGTACTTTGGGTTTATGAAACAGATACCTTCTCTCTTGTTGACAAGAAATCTTTAAAGGTTGAAAATATAAGAAATCTTTTGGAGCTTGAGAATAAGAAGGACAAGATTATTGCTTTTGCTTGAGAGCCAAAAGGGCATAGATTTGCAGTTATTCATGGTGATAACCCTAAGCCTGATGTTAGCATCTACTCT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF08662.14	eIF2A	7	111	8.80E-34

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0031369	translation initiation factor binding	Molecular Function
GO:0005852	eukaryotic translation initiation factor 3 complex	Cellular Component
GO:0006413	translational initiation	Biological Process
GO:0003743	translation initiation factor activity	Molecular Function
GO:0003723	RNA binding	Molecular Function

InterPro

InterPro term	Description
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR013979	Translation initiation factor, beta propellor-like domain
IPR011400	Eukaryotic translation initiation factor 3 subunit B

trEMBL

trEMBL term	Description
A0A9D4WLU4	_

SwissProt

SwissProt term	Description
EIF3B_ARATH	Eukaryotic translation initiation factor 3 subunit B

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G27640	translation initiation factor 3B1
Medicago sativa L.	MsG0380017330.01.T01	_
Oryza sativa L.	LOC_Os10g41960.1	eukaryotic translation initiation factor 3 subunit B, putative, expressed
Cucumis sativus L.	Csa021263	_
Glycyrrhiza uralensis Fisch.	Glyur000385s00019803.1	_
Codonopsis lanceolata	Cl_chr03_13000T	_
Arachis hypogaea L.	AH10G20060.1	Eukaryotic translation initiation factor 3 subunit B like

Expression pattern