Gene detail

Detail information of Am04G028320.1 Annotation

Gene ID	Annotation
Am04G028320.1	trigger factor type chaperone family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G028320.1	mRNA	Chr04	174554250	174559586	-

Sequences

CDS:

>Am04G028320.1
ATGGCCATGGAGCTGTGTACTCGAACCTTCACAAGTTTCCCTCTTTTCAACCCTTCTTTATCTCTTCCTTTTTCAAAGTCTCTTCATCTTCTTCCTACTAAACCCTTCAAATTCAATTCCTTCAAAATTTCCTCTTTCACCCCTCACACTCACCACTTTCAACCATTTCTCTATCATCACACTTCTTCTTCTTCTCCCTTCACTGTCTCAGCTTCTTCTTCTTCATCATCTTCTTCTTCTTCGGTCTCACTCGACTCCGAAAATTACCGTCTCCCTGCAGACTTGAAAGTCACCGAAACAATTGAACCCAATTCCACAGTTAGATTGCATGTGGAAGTGCCAGAAGTGGTATGTGAGGATTGTTACAGATATGTCATTGCTGAGTTTATGAAGCAAGCAAAGGTCCCTGGATTTCGTCCTGGAAAGAAGGTTCCAGAAAGTATTCTTATTGGTTATGTTGGGAGTAAAAATGTTCAAAAGGCTACAATTGAATCTATATTGAGGAGGACACTTTCACATGCTATGGCATCGGTTACTGGAAGGGCTTTGCAGGACTCAGTACGTATAGCTACTAAGTTTTCTGATTTGGAGGAGACATATTCTTCTCTTGGATATCTTAGATATGATGTCATTGTTGATGTTGCACCAGAAATCAAATGGATTTCTGATGATGCATACAAAAATCTGAAGATTGTTGTTGAGATAGACAGTGATATAGATGCTCATAGAGTATCTGAAAAAGAATTTAGAAGGCGTTACAAGTCAATCGGTGCACTCAAAGTTGTTACCGACAGAGGATTACAGGTTGGTGATGTTACTGTCCTTGACATCTCAGCAACAACCATTGATCAAGATGAATCAAATATTAAAAATATTCCTTCGGCTGAAAGTAAAGGATTTAATTTTGATACCGACGACGGTGAAATACTGTTGCCGGGTTTCCTTGATTCTATAATTGGAATTCAACGAGGCGAAACCAAGTCATTTCCCCTTATTTTTCCTGAAACATGGAAGCAAGAAAATCTCCGTGGTGTACATGCTCAGTTTACTGTGGAATGCAAAGAACTTTTTTACAGAGATTTACCAAAGCTGGATGATTCCATTGCTGATAAGCTTCTCCCTGGATGCACAACAGTGGAGCAGGTCAAAGACTTAATCTTACAGAGATGCCTAGAGGTGGAGCAAACAGCTAAGGAACAAGCAACTGATAATGCTATATTGGAACAGCTCTCTAAGATGGTAGAAGTTGATATACCTCAATCCTTGTTTGAGGAACAAGGTAGGCAGCTTTATGGAGCAAACCTATTAGAGATACAGACAAAAGTAAAACTAACTGAGCAGCAGCTGGCTACTCTATCAAGTCCAAAGGCCGTGAACGAATATCTTCAGCATCAGAAGGAAAACATAACAAATTTGATAAAACAGAATCTGGCAGTTGGTGACATATATAGGCGTGAAAATCTGCAGCTCGCTACTGAAGACATCGTCAAAGAGGTTGAGAATTCTATTGCTGAATTCAAACGTCAAAATCAAGAATATAATGAGGAACGGGTAAAAGATCAGGTTCAAGAAATACTAGAAGGAGCTAAGGTGCTTGAATGGCTGAGAGAACATGCAGACGTTCAATATATAACCAGATGA

Protein:

Promoter(3k):

>AM04G028320.1
TTGGGCCTCTGTGACACGTGGCACTGACAAGCCACGTCAGCATCCTATGTCACCTGAGCCACGTGGCACTGACATGTGCCACCCCAGCAACCAATGGATGGCTGCCACATGGCACCGACTTGGCTAAGTGGAAAACCTTTGTTACTAAAAAAATAAACATGTTGGTGGCCAAAGGGTGTTGAACTCGTGACTCTCAATTGATGCATACTCTCTCTTGCCATTAAGCCACAAGAATACCTTAGTATATTAACCCACCTATATTAATATAGGTTTAAATATATATTACCCCCCTGCAAATATACCCATTATCCAGTTACCCCCCTACAAAAAAAAACATTTAAAACAAACCTTGCAAAATATAAAGTTATCCAGTTACCCCCCTGCCGTTAAATTTTCTGTTAAAAAATGTAAAATGTCACATATCCAGTTACCCCCTGCCACGTGTCACCATATTATTGGGCCTCTGTGACACGTGGCACTGACTGCCACGTCAGCATCCTGGTCAACAGTGCCACGTCAGCAACCAATAGATGGCTGCCACGTGGCACTACTTATATCACTCAAAAATAAAGAATTTTGTCCCCAATGAGTGTTGAACCCGTGACCAGCCACTCACACACACGCCCCTAACCACTGAGCCACGTTATTACTTGTGATTATTAACACAACTACTAATATATATTACATAATTACTACTTAAATTAAAAAAAATAAATCATCATCAGTTCATCATCATCGTTCCTCATCAACATCACCATCCCCCAAACCTTTCCTATTTTCTCTTCCTTTTTGCACCAACACTTCCGATCCCAAACCAGATACTCTTCTTCGATTTTCTCTTCCTTTCTGAAACGATCATCGTTCATCATCATCATCGTTCATCATCTTCGGCTATGAATCGCAGAATGAATCCTGAATTCGATTTCGTCCCTTCAGCAGAATGAATCGCAAACTGCTTCGATTTCGCTAGGATTGAGGGTGAAGAGGGTGAATCGCAAACTGAATTCGATTTTCTCGTTGGTAACTGAATTCGATTTTCTCGTTGGTAAAAGAAGAAGAAGAACCCAGATCTGGAAACAGTTGATTTTTTTAAGTTGAATTTGATTTTCTGTTTTGATTTAAGAAGAACCCAGATCTGGAAACAGTGAAGAGGGTGAATCGCAAACTGAATTTGATTTTCTGTTTTGATTTTCTCGTTGGAAACAGATCCGCAAACTGAATTTGATTTAAGTTGATTTCGATTTTCTGTTTTGATTTTTAATTTAAGCAGAAGATGAATGATGATGATTTTTTTCTGGAGATCCGCAAACTGATTTTTAATTTAAGCAGAAGATGAATTGACGATGAATGATGAAAACGAATTCTGGGTTTGATTTAGAACGAACGATGAACGATGGTTACGTTTGATTTTTTTTTAATTTAAGCAGTAATTATGTAATATATATTAGTAGGGGAGATATTAATCACAAATACTAATGTGGCTCAGTGGTTAGGGGGTGTGTGTGTGAGTGGCTGGTCACAGGTTCAACACTCAATGGGGACAAAATTTCTTATTTTTGAGTGATATAAGTAGTGCCACGTGGCAGCCATCCATTGGTTGCTGACGTGGCACTGTTGACAAGGATGCTGACGTGGCAGTCAGTGCCACGTGTCACAGAGGCCCAATAATATGGTGACACGTGGCACTGACGTCAGTGATGACGTCATCACTGTTAACTTTTAACAGAAAAGTTAACAGCAGGGGGGTAACTGAAAACAGTTACATTTTGCAGGGTTTGTTTTAAATGTTTTTTTTTGTAGGGGGATAACTGGATAATGGGTATATTTGCAGGGGGGTAATATATATTTAAACCATTAATATATTACAGAACCGTTAATTTTTTTTTATAAAAAAAAATCAAAAACAATATCCAAGGAAATCGAAAACATATCTTCTTTCTCTTCACGGTCCTTCATCTTCATCTTCATCCTATCTTCTTTTTCTTCACAGATCTTTATCTTCTTCATTTCGTTTTAACCATGGAAACAAAGGAAAAAAATGAGAAAAACGAGAGATTGGGGAAGATTGGAAAAACGAAATAATGAGAAAAACACAAATCTGGAAAAAATGGCAGATTGGAAAAAACGCAGATCTAACTATAGGAAGATTTCGTTGTTCTGGAAAAAAACACAGATCTAACTATAACGAAATATTGGGGAAGATTTAGCCAATGTCATCTCAGTTCCTTGATTTAAAGATGAATTCTTGTTAGAGGATGTGAGATTGCCATGCCCACCCACAGTAGCAACAGAATGACCATTATGATGGAAATCAAAACGAAATGGATTTGAACTGAATCTGGACGAAATGGATGGAAATCAAAACGAACTGAATCTGGTGGGTTTCGTTTCCAGATCTGATGAAGATCTGATGAAGATTTGATGATGAAGATGAAGATTTGTTCAAAATAATAACTAAATATCTAATATATATTTGTTGCTGGAATTAGTTTCACAAATGTAAATGTAGCTTAGTGGTATTAATTTGTTTGCATCACTGAGGGGTTAAGGGTTCAAATCCCATGTTAGCCAAAACTTGTATTTTTTAGTAACACACTATTCACCCAATGCCAAGTCAGTGCCACGTGGCAGCCATCCATTGGTTGCTGACGCGGCACATGTCAATGCCACGCCACGTGACAGTGGTGACATAGGATGCTGACGTGGCATGTAGTGCCACGTGTCACAGATGCCCAATAATATGGTGACACGTGGCACTGACGTTAGGGGGGTAACTGGATAAAGTTACATTTTACATTTTTTTAACAGAAAACTTAACAGCAGAGGGATAACGTTGCATTTTACGAGGTATTTTTTAAAACTTTTTTTTTACAGGGGGTAACTGGATAATGAGATATTTGCGGGGGTAATAAATATTTAATACTTTAAATTATATTTCGTAAAGTTTGAATAAATATCTAGTTTTTATTATCCGACCAGCGAGCTCTGTCCGTGAGCTTG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF05697.16	Trigger_N	97	244	4.10E-18
PF05698.17	Trigger_C	378	535	1.00E-15

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0044183	protein folding chaperone	Molecular Function
GO:0043022	ribosome binding	Molecular Function
GO:0061077	chaperone-mediated protein folding	Biological Process
GO:0015031	protein transport	Biological Process
GO:0003729	mRNA binding	Molecular Function

InterPro

InterPro term	Description
IPR027304	Trigger factor/SurA domain superfamily
IPR008881	Trigger factor, ribosome-binding, bacterial
IPR037041	Trigger factor, C-terminal domain superfamily
IPR008880	Trigger factor, C-terminal
IPR036611	Trigger factor ribosome-binding domain superfamily
IPR005215	Trigger factor
IPR046357	Peptidyl-prolyl cis-trans isomerase domain superfamily

trEMBL

trEMBL term	Description
A0AA86VS26	_

SwissProt

SwissProt term	Description
TIG_ARATH	Trigger factor-like protein TIG, Chloroplastic

KEGG

KO	Description	Enzyme
K03545	trigger factor

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G55220	trigger factor type chaperone family protein
Medicago sativa L.	MsG0580029862.01.T01	_
Oryza sativa L.	LOC_Os06g20320.1	peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
Cucumis sativus L.	Csa019808	_
Glycyrrhiza uralensis Fisch.	Glyur000246s00016997.1	_
Codonopsis lanceolata	Cl_chr04_29590T	_
Arachis hypogaea L.	AH17G02030.2	Trigger factor-like protein TIG, Chloroplastic like

Expression pattern