Gene detail

Detail information of Am04G028070.1 Annotation

Gene ID	Annotation
Am04G028070.1	xyloglucan endotransglucosylase/hydrolase 16

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G028070.1	mRNA	Chr04	174080401	174081498	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM04G028070.1
TCTCACCGTTGAGACTTCACCCGTCTTTTCACACTGGATTCACTCTCGAAAAACTTCAACAATCACGCACTGAATACCATTTGTTGGAATTTTTCATACACACCACACACACTCACACACGCACTGAGAGAGAGGGAAGAAGATGTAACTGAAAATGGTTAAGAGTAAAACTGAAAATCAGTGTTATTTTTTGCATCACTGTGAATGTTGCTTATATACTCAGTCCATGTAAGCATGCTGAGTAAACATACAACTGAATAAAAGTGTAATTTCGACTCCCTCACTTCGACAGACCAGTTCTGTGAGTCGAACTATCAGGTGTCGAACTAGCTAGTTCTGTGAGTCGAACTAGCAAGTGTCGAACTAGCTTACTTAGTTATCATAGTCGAACTAGTAGGTGTTGAACTAGCTTACTTATTTAACACAGATTCAGGTGTTGGTCACAATTTTGCCCTAGGTTTGTCAAAAAGAGGATAGAGTTCATGGGGAGAGCAATGAAGGCGAATTCAACGTGGGTGCAGAGGAGTGAAGGAGCGGAGAAGCAACATCGAGTTTGTGGGTGCAGAGCAGTTCCATAACCGTTTGCCCACTACGTGTTGTGGAGTGGCTCCGTGTGTCATCTATAATATCTATAATAAGCGCTATTAGACATCCGCTATTAAAACCAACTTTTGGCGTAGTACTGGGTCACTAGGTCAAGGGTCGGACCGAAGAGTTAGTAGTTGAACAGCATAATCGGTTTTTGCAGAATATCTAGAAATGTTTGTAAGTAATATCAACAAATACACATTGGCCTAATGGTAAAATGTTGTGCAAAAAGGTGATGTGCAAGTATACATAATCACAACAAGTAATACAATGATAAAGTAGAGATCGCACCCACGATGATTGATGTTAATTTTAGAGTTTAATATAATAGCAACTAGTGATGGAAAACAAATAACAATAACAAGTTGTCAATAAGTATTGTGAATAACAGAAATGTAAGAAAGCAAGTAAAGATGGTATGAAGATTCAAAGTAAAAAGATAGTTGGAATGTCTTTCACTAAATAAATCCTTCAAAACAAAATTTCACTAAGTAAATACTTTAAAACAATGCTATGTGTGATGTTGGGGCATTGGATGCTGTAGCAATTGATGTTTGTCTTTCAGTCACTAAGGTCAGGGCTACATTACAAGGGACTTATGTCTAAGTTTTAAATAGGTTCACCCATGTATATTAAGTACCCACAGTTTCATCCTATGGACTATACTTTCCTATGTCTAGGTTTAAGCATGGGTTGTTAAAGTGTCCTTTAACAACCACTCACACACATTAACCCTTGAGTTCGAATCATAAACCATGTCTGAATTTATGAATGTACTTATATTTAGCTGATCGGTTCTAATAAGTTTGGAAAAAGTTTCACACAAGGATTAAAATGCAAACATCAAAACATTAAGTTAGAACTATTAAAAAGGTCATTACAAAGCTTTAAGCATCCCAACTACAAAAAGCTTAGCTCATGATGAGCATCAACAAGGAAATAAAAACAAGGATAGATCCTATATTCATATTACTGAAAATACAAAAAAAGAAAAGAGCATAGAATATACACTACTCAAACTTCTTTGCATGAATCAGTTCCGTAATGCTGCAGCATTGCTTCGTAGCATTGAAGTGCAGGAATTTTGCTTTTAGTTTTGTGAAGAGAGCTTGAACAAAAATGGAGAGAAAAATGTGTCCAAGACTCTCACCATCTGGACCAGCAAGCATGAAGTGTGTTGGAGAAGAAGACCCCTTTCAAATATATCAACTTGTCTCCAAAAAGTAAGAAGCGACATAAATCAAAAGGTGTGAAAAGTCACCAACTATTTTTATCTCCCACTTGAAAGTTAACAAGTGTCCCTATAAAGTGATTTGGTTGGTGGCTGCATCAGGTAGGTTGTCCCATTGATTTTCGCTGACTTGACATAAAGTGGGAGTGCCAGAGTTGCACTTTTCAGTTTTCTCTCTTTTGCCGACTCAGGCACGCTGATGCTAAAGCATCACTTGCTATAGCATTGAACAAACACATTAAAAATACCACAATAGCACAAAAGTGTCAGATTATCACAAATCAAATCCTAACCCTTATTAACACTTCTTAACATATATTTACATATTTAACAACATAATTTACTTAATAACTCATATTAATTTAAGTTTAAAGTAAAAAAGTAAATGGGCAATTTAGTAAATTCACCAATCCTAAATTTTCTTATATAGTTAGTTGATTAGTTGATTACTCAATTAAATGGCTGGAATAAAAAAATTATGCTAGTGACTATAGTGAGTGGTATTCACTCTTTAACCTTGTTTCCAAATACTTTTTGCTTCTAAATTTTGTTTCTTTTCACTCTTTAACCTTGTTTCCAAAAATTGGATGAGTACCAAATTTGGAATTAAAAGAAGAAATTGCTTAATCAACTAATGCTAAAGGAAAATTACTAAATGCTTATAAATTAACCTTTTTCATATTTTTCTTGTGTATTATTCATTACACCTATGCGATTATATATAAGACTCTAGCTGCAACGAAAATAGAATTTTACAGTGGAATAAAAATAGAATATCCTAACAAACAATTCCTTCTAGATCCTTTTATATTTGATATGCATGTTTAACACGTAATTAGATCATTTATTACATATTTGGGCCATAACATATTCATTCTTCAACCTTGTTTATCACTTGCATGGCATGATACTTCTGTTTCAAGCATTAACCTATTTTGGGCTAACTTGTGTTGTGTCCAATTAATGTTGAATGTCAAGACACAAACTATTTTGGTTCTTCTAAGTTGGGTTGTAATATTTTCAACTATATATACATGACAGTAATTACACCTAAAAATATATGTGACAGTGACATTTTTGACAGCTAAACTGATCTGAATCCACTATATCTTACTGTAATTATCCCAATACCTATGAATATAAATCCTTAATGTTTCTTGATTCATGAAACAATATTAACT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00722.24	Glyco_hydro_16	26	206	1.30E-59
PF06955.15	XET_C	237	275	6.40E-10

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH16

Gene Ontology

GO term	Description	Category
GO:0042546	cell wall biogenesis	Biological Process
GO:0071555	cell wall organization	Biological Process
GO:0030247	polysaccharide binding	Molecular Function
GO:0010218	response to far red light	Biological Process
GO:0009835	fruit ripening	Biological Process

InterPro

InterPro term	Description
IPR010713	Xyloglucan endo-transglycosylase, C-terminal
IPR016455	Xyloglucan endotransglucosylase/hydrolase
IPR008263	Glycoside hydrolase, family 16, active site
IPR000757	Glycoside hydrolase family 16
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily
IPR044791	Beta-glucanase/XTH
IPR008264	Beta-glucanase

trEMBL

trEMBL term	Description
A0A1S2Z901	_

SwissProt

SwissProt term	Description
XTH16_ARATH	Probable xyloglucan endotransglucosylase/hydrolase protein 16

KEGG

KO	Description	Enzyme
K08235	xyloglucan:xyloglucosyl transferase	[EC: 2.4.1.207]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G23730	xyloglucan endotransglucosylase/hydrolase 16
Medicago sativa L.	MsG0480023001.01.T01	_
Oryza sativa L.	LOC_Os06g48200.1	glycosyl hydrolases family 16, putative, expressed
Cucumis sativus L.	Csa007996	_
Glycyrrhiza uralensis Fisch.	Glyur001264s00041262.1	_
Codonopsis lanceolata	Cl_chr08_35960T	_
Arachis hypogaea L.	AH11G01670.1	Probable xyloglucan endotransglucosylase/hydrolase protein 16 like

Expression pattern