Gene detail

Detail information of Am04G027970.1 Annotation

Gene ID	Annotation
Am04G027970.1	Ca2+ activated outward rectifying K+ channel 6

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G027970.1	mRNA	Chr04	173931454	173932967	-

Sequences

CDS:

>Am04G027970.1
ATGCAGGAACCCCTCCTTATCCATGATCTTGCTCCTTCCCCATCATTGGCTCAATCAACCTCTCCTCATATCATCAATGAAGTCAAGAACCCTTCTTATATTAATCTCATAGCCAATTTGAACTTCATGGAAGGGAAGATTACGCATCGTTCCCGCTCTGCTCCATCTGTATTATTCACTGACATGATGGTAGATTTTCATGAGCATTCTGAACACAAACCTGCACATAAGCCATCAAGTTTAATAGTTAGAATATCTTTCATTGTTGTTTTCTTGTATGTGGCTATTGGGGTTACAGTATACTTGACTAGTGATAGTTTTAAGGGAACTACAACATTCAAACCTGTAGATGCTGTGTACTTCACAATGGTAACTCTCTGCACTATAGGATATGGAGATATTGTTCCTGACACCATATTTACTAAGATGTTTACATGCGGTTTCATTTTGGTTGGTTTTGGATTTATTGGTTGTCTACTCAATGAGTTGGTTGCACATATCTGTGATACACACGAGGCATTTTTGTTGAGCATGATGGATGAGAATAGATATAAGAAAATTCTGAGTACATATATGGTAGATGAAGAGAAAGGAAGAATGAGGATAAGAACAAAAATTTGTGTTGCTTTGGTTGTTGTTATTGTTTGCATTGCTGTTGGAACAGTTACGGCACACTTTGTTGAGGGTTTGAATTGGGCTGACAGTTTTTATCTTTCTGTTACTTCTGTTACAACTGTTGGTTATGGAGATTATTCTTTCAGAACTTTAACTGGGAGATGTTTTGCAATTCTATGGCTTTTGGTAAGCACATTGGCAGTTGCTAGAGCTCTTCTATACCTTACTGATTATAGCATGCATAAGAGAAGCCGTGAAATGGCGAAAAGGGTTCTTCAGAAGAAGATAACCTTATCAGATTTAGCGGCAGCTGACCTTGATAATGATGGATCAATCAGTAAGTCTGATTTTGTCATATACAAGCTTAAGCAAATGGGGAAGATTACTGAGATAGACATTCTACAAATTAGCAAACAATTTGATTCCTTGGATCACAACATGTATGGAAAGATAACTCTAGCTGACCTCATGGGAACTGTCTAA

Protein:

Promoter(3k):

>AM04G027970.1
TGCTGTAGGCATTTTAAATTGCTTACTATAAAATGATTGTGTAATCTTTTTTGTACAGAAGTAATTATGTTTGTTTTTTGTTTTTACGTTTATTTTTATATCTTGTATGACCTAGCAGGTTATAAGAGTGAAATGGTCACTCCATGCACGAGAGGAAATTGTTTTTGAACTTCTTCAACAATTGAGAGGAAATGCAACAAGAGCATTGCTTGCAGGAATAATGAAAAGTACAAGGCAAATGATTGGGGAGCAAGAAGCAGTTCGAGGTCGCCTGTTCACAATCCAAGATGTCATGCAAAGTGCAGTCCGTGCGTGGTTGCAGGTTTTTGTAATCTTTACCGTCCACTGAAAGTTAATCTGTTTATAAGTAAGACACAAATATTTCAATAGTGAGTGTGAGATATAAATGTTTCATTGATTTCCTGTTGTGTGGATCTGATATCATTTCTTTGGCGATGAAACTTTATTTAGTCTCTAAAAACATGACAACAAAAAAGATGAGCTCATAGTCAAGACTCAAGAGTAGTATGAATTATTAAATTAAGGAAGAGATCATACATTGAATTGTTTGTTGCTGTAGAGACTGAACTACAATATGTTGTGTAAATGTTAATTCTATTCCTTTCCTAGAAGATTTCAATAACCTGCATTCCATCTTTTGAGCTGGATAGGTTTTCTCTTGGCCTCACACTCTTGCTACTTATTTTAGGACAGAAGCCTCACGGTTACACATAACTTGGGAGTGTTTGGTGGTTGTGGCCTTGTTCTTTCCATCATCACTGGACTGTTTGGCATAAATGTGGATGGAATACCTGGATCTGAGGGAACTCCTTATGCATTTGCTCTATTCTCTGGACTCCTATTTCTGTTAGGAGCAGTGCTAATTGGAATTGGGTTGCTTTATCTTGGGCTGAAAAAACCCATCATTGAAAGAAATGTTGCTGTGAGAAAGCTAGAGCTTCAAGAGCTGGTTAAGATGTTCCAACACGAAGCAGAAACTCATGCACAAGTACGTAAAACGGTGCCTCACAAAGATGTTCCACAAAATATAGCAGCTAGGCCAACAAATGGAGTAAATCATCGCTTCAAGTTGTCAAAATTGTTCAATCTTTAGATATTCGTAGTGCAGTTATGTGGTTCAAGATGTTAAGACTTCTATTAATGATGTATCATAAGGGAAATTCTTATGACACACCCCATTCCTTTTTTGGCACTTCCCTTACACACTTCGCACCTTGATACCGAGTGGCAAAATTTGTCCCTCATTATCAAGGTATGGAGTGAGGGAAGTGCAAAGAGGAGAAAATGGTTGTGTCAAGAGATAAACCCATCTTTCGTTGTTATTAGTTATTAGCTTATTGGAATTTAGTTAATGCCTATATAGCTCTTAAAATGTAAAGATGAAATTTTTGCTTGAGAAGTAAATTGACATTAGTTAGATGAATCTTTGATGCCCCTTTTCCTTTTCTAATGTCCATTAACGATTTTATCCTTTTTTTTAAATAATTAACGATTTTATCATTGAAGGAACTATTATGGGTAGGGATGTAAATGGGGGGCACGCACGAGTACCAACTACCAACTACCCGCCCCGCGAGATATAAATGAGACTCGTGCTCGCCCCGTACCCGCGTAGCGGGTATTAAACGAGTATTATCTCCTTGCTCACAGATACCCATGTATCTAGTTAGACATTTATCTTATCAATTATTTACTAACTTGTAATCATTAACAAATGGAGATAAAAAAATACTAGAATTACAATAATAGGAAACTTTGAAAATAACAACTCATTAATTATCCAAAATATTATGATAAAAGATACAACCACAAATTTCTCTCTCTCTCTCTCTGTTATGGGTACGGGTACCCGCGGGTACGAGTACCTCATTACCCGGCCCTACCCCGTTTATTGACGGATATTTTTATTGCCCGTTTATTTTGCTTGCGGGTACCCATTAAGAGACCCACCCCGCCGTGCCCATCGCGGGTTTTACCCGCGGGTGCGAATTTTTTTGCACCCCTAATTATGGGCAACTCTAAAAATAGAAGATAAATGACGACATGGTAGGCATAATATGTAGAGTTCTATTAGCCTTTATTTACATTCTTTTTTTATATTTACAAAGAGAGGGATATATATGTAAAATTCACATGACACTCATGTGAAACTTTAATATTAAATGTTAATAATACATTATTTTGAAAATTTCCTCTATGTTTGGACCATTTTTAAAAAGCTAATACACGTTTTAAGTAATCAATTTACCAGACAATGTATTGACTCTTTAAAAATTAATCAATTATAAAAAGTGAATTGAAGACTTCATTCTAAATATTTTTCATAGGGAAAAATCATTTTTCATTTACTTTTTTTAAGTCAAGTCTGCTTCAACCGGTAGCTAGGGGAAAATCTCTTGAGGTACTAGGATTTATTTAAGAGGTTATCTATCTAAACAAATATTTTTCATACACAAGCCAAGATTCAAACCTCTAACCACATACTTAAAGGACCTAGTTACCTACCAACTGTGTCATACCATGTTGGTACTTGGTAATTTTCATCTATATTGATTTGTAGCATAAAGTGGTTCTTGTTTCACGTAGTTGGGGGCCAACAACAGGACTAAAAATGGTAACCATATGAAATTTTGGGGGTTCTAGTTGGGGCATTGAATAATGTGGACTCTCCATATTTAGTTAGTCATCGAATTTAAATTTAAACTAAAAAAAACAATCCACTGACAATAATTTTCTCCTTATCAGAACAAAGTTTGTGTAGGCAAAAGACATCAAACATTAAATGAAGTTCTGTAAATATATCTTATATTAGTATATATTAAAGACATAAACCTATGCATGTGTCATAGTTGGAGTTAGATCAGTTGGCGACAATTAGCAACAGCTAACCACCTTTCCTCTGGTTTGACTTGTAGTTGAATGAACCGGTGATACTAGCTTGCTAGCAATAGTCTCCAACTGACAATTGATCAATGCAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF07885.19	Ion_trans_2	89	164	1.00E-27
PF07885.19	Ion_trans_2	212	283	1.00E-27

Gene family

Gene family	Subfamily
Transporter family	VIC

Gene Ontology

GO term	Description	Category
GO:0022840	leak channel activity	Molecular Function
GO:0000325	plant-type vacuole	Cellular Component
GO:0022843	voltage-gated monoatomic cation channel activity	Molecular Function
GO:0005886	plasma membrane	Cellular Component
GO:0005509	calcium ion binding	Molecular Function

InterPro

InterPro term	Description
IPR003280	Two pore domain potassium channel
IPR013099	Potassium channel domain
IPR011992	EF-hand domain pair
IPR018247	EF-Hand 1, calcium-binding site

trEMBL

trEMBL term	Description
A0A1S2XP87	_

SwissProt

SwissProt term	Description
KCO6_ARATH	Two-pore potassium channel 3

KEGG

KO	Description	Enzyme
K05389	potassium channel subfamily K, other eukaryote

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G18160	Ca2+ activated outward rectifying K+ channel 6
Medicago sativa L.	MsG0480022757.01.T01	_
Oryza sativa L.	LOC_Os09g12790.1	potassium channel protein, putative, expressed
Cucumis sativus L.	Csa000700	_
Glycyrrhiza uralensis Fisch.	Glyur001254s00028552.1	_
Codonopsis lanceolata	Cl_chr03_09150T	_
Arachis hypogaea L.	AH17G03100.1	Two-pore potassium channel 3 like

Expression pattern