Gene detail

Detail information of Am04G027220.1 Annotation

Gene ID	Annotation
Am04G027220.1	Zinc finger C-x8-C-x5-C-x3-H type family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G027220.1	mRNA	Chr04	171751072	171756181	+

Sequences

CDS:

>Am04G027220.1
ATGCCAGAAAATCGACAGGTTTTGAAGAATGTTGCTTCTAATCCATCTGGTGACAACATTGAAGAAGCAATTCGGCGTTTGAAAATCAATGATAATCGAGAGAGAGATGCTGCAGCTCAATCTACCCCATATCCGGATCGACCTGGTGAACCTGACTGCTTATATTATTTGAGGACTGGAATGTGTGGTTATGGGAGTAACTGTCGCTATAATCACCCTGCTAATGTTTCACTTGTTACTCAATATGGTGAGGAACTCCCTGAGAGAGTTGGGCAACCCGATTGTGAGTATTTTCTTAAGACAGGAACATGCAAATATGGATCCACATGTAAATATCATCACCCAAAGGACAGGCGAGGTGCTGCTCCTGTAATATTCAATACTTTAGGTCTTCCTGTGCGTCAGGAAGAAAAGTCATGTCCCTATTACATGAGAAATGGGTCCTGTAAGTTTGGAGTTGCATGCAAGTTTAATCATCCACAGCATGCTTCCTTTGGAGGTTATTCAGTGGCTGTGCCTGGATCTCCCCCCTCAACAACTATTCCTACATCAGGTTTTCCATATGCTGGTGGGTTTCCTGCATATTCAGTGCCAAGGATGTCATATTTAGCTGGGCAGGGACTTCAATCTTATGTGCCTCCGTTTCTGCCTTCATCACAAGGCATTATGCCTGCGCTTAACTGGAGCAACTATATGGGAAGTATAAACCCTGCAATGCCTACTGGTTTTCTTGGCTCTAATCTTGTCTATGACTTCATGAATCCCGGGGAGTCACTTTCTGGTGGGCAGGTAATAAATTCAACTCTCCCAGATAGACCTGATCAACCAGAATGCAAATACTTTATGAACACTGGGACATGCAAATATGGATCTGATTGCAAATTCCACCACCCCAAAGAAAGAATAGCCCAATCCTCTTTGATAAATCCACTTGGTCTTCCTGTGAGACCTGGGCATGCTATATGCTCTTATTACAGAATCTATGGAATATGCAAGTTTGGCCCCACATGCAAATTTGATCATCCAGTTTTGGCTATCCCTCAAAACTACGGCTCGCCCTCACCGACGCTATCTGTCTTTAATGCACCTCTTCTTAGTAATCCAAGAGGGATGTCAACTGTCCAACCAATTGAGACATCTCCATCTAAATTATCAAGTGACAAGCTTCAGCATTCTGATACAAAAGCTGTCACAGAAAATTCATCCAAACAAGCTGACACTACATCAAATTCCACCCAAGCCTCCTCAGAGTCTTCACATGATTAA

Protein:

Promoter(3k):

>AM04G027220.1
CTCCCTCCCTCCCTCCCTTCCTCTGCCGACCTCTCCTCTCGCTGATTTGTTTCATTTTTCACCTCTATTCCAGATTTTTCGTAGCTTTTAAATGAGAAATTATTAACCGCAAGTTTTTAAATGCAAGTTTTTATTCTGAATCCAAACCGGTAATTTACCAGTTCTGAACCGGTTTTTAACCTGTTTGCAAATATAAATTGGTATATACAAACTAGTAAACTGTGACCATATTTTAAGAGTGGAGCGGGATGGTGTGGTATGGTTCATATACCATGCACATCCCTAGGCATGAGTAGGTAAACTCTTTTCTAGGGTATGTGGTGAACCTTGTATTTCGAAGGAACTTTTTGCTATGACTTAGCAATAATTTTGATTTTAGCATTGACTTTTTTATTTGAATTATTTTACAAAGCTTAATATGTGTAGAGCGATCGTATTTCAACTGATTGGCATGCTTATAAGATAACCAAGGCTAATTACTATGCATCATGACCAACCTTAGTTTTAGTCTTTCATTCATTCAACTTCCATATTTGTGTTTTTCTTAGATTTAAAAGTTTTACTTGACCTATCATGCTTGACCAAATAAATTAGTGCCTTAAGCGTAAAGATTGTTCATCAGATAACAAGAAGGATGTACAATGAAATTGTGACTCGAGGTTTTGCTTTGTTGCTCACATACGTTTTTTCCCTCTTTTGCTAACAACTCGCAACCATTTATTTTTGTAGCTTAAATAATATAAGAATCAATTAATTCTTTTGTTATTCATATTTCCTATATGAGTTTAACAACTCAACTCAAAAGTCCCAAGTATGCTTGTCTAGAGAGCATTAAAGACTTTTGGATTTCTTATTTCCATTTTACAATGGTAAGCGACATGAATGTAGGAGGTTGGTGTTTTTCAAAAACTAAAAAGGTGTTTTTTAATGAAACTTGAAGGTACAGGTGAATACAAATTAGGGTTTTTAAAAAGGGAGTGATCGATATCCCAAATACTTGTATGGTCATACAATATATGATTGGTTGAAAATCTTCCATAAGTTTCTCATAACTGGGTCATGAGAGGAACTTGGGGGATCATTCACATTGGGCCAAGATTAACCACACAAATGAGTTGGACACCACATCTTAACCGAAAACCTTAGGACATCAATATGGATCCCCTCACTTTTATATATATATATATATATTGCCCAACATTATTCACTTTTCCATCCAATGTGAGACTTCTACCTACTTGATACACAATAATCTCCCCCTCAATTGTGAGTCATCAATCTATTCATTTGGGCACATGCTCCTCCTCAAATGGAAGCTTTTTCATCCACATATACTTGCACCGTTGTTGGCTCATTTTCATCAACGGGACATGCTTCCTAGTCTCCACATTGCTAGGCAGACTTTCGATACAAGGAGCTGGACCTTAACCATCGACTCTGATACCACAGTTGAGTCATGAAAGGAGCCTAAGGATTATCCACATTGGGCAAAGAGCAACCACACAAGTGAGTTGTTCGCATCATAACCGAGCTCACCGAGCTCCCCTCATGACCAAACACAATTTAAACTCTTATAAATAATAATGGAAGAAAATCATCAACCATATCTATATAAACATAGATATATTTTCACTAGTATATGTCTCTTTCGAATTTCTTATTTCCCTTTTACGATGGTAAGCCATGCGAATTTAAAGGAGGTTTATGTTTTTCAAAAACTAAAATGTGGTTTTCTAAAGTAGATAATACATTGTGGCTGATACCTTAGTTAGAGCATTAAAGAATTATGCTAGATCCCCATGTCTTTGATTGTAGTCTTACTTATATTGCAACTTTGACTTTGAATGAAATTCCATAAGTTTCCTTTGGTAAAAAAAAAACAAACTAAAATGTGGTGTATAAAGAAACTTAATAGAGGTTTAGTGCAATTTCTCTTAAAATCAGGGTTTTTAAAAACAAACAATCTACGACCACAAACATCATAATATTATGTCTCTATCAACACAATACAACTGCAATTAGAGCCACAACAATAACCTGAGAATATAGCTCAGTTAGCGAACTAATGAATACCGAAAGAGTATACCAATAAAAAAAAACTAGGGTTTCTCACACAATATTTTTTTGGACAACAATTGATCATCGCGCTTTAAAATCCTACTTATATTAGAAGAAAACCATATGCCGTATCTATATAAATCTTTATAGATATATTTTTCAACACTACTTGAATTGTCAACTCCAAAAATTGTGACCTCAATCAATGAAAAAAATAAATAATATTAAAGGGGTTAGATCTCATGACATGAGAATAAAATCTACGGATGAATTGCTACCTAACATCATTCGCATCTACTTTTCAGGCCAATTAATTAATTTTTCCAAACAGTACAAACATATTAAAAAAATAAAAAATAAAAAAAAGGATTTTAGTAGTGACTGCAGTGCACGCGCCGTATATTAGCAGTATTAAATCACGGTTCACGTAAACACGTTGAATAGAAGCCACGTGGAGGGTAATATTGGTACAAAGAATTTATTGTTCGTACACGCGCGTAAGAACCTTATTTTATTAATAAAAAAATCATATATTATTATTATTGAAAAAAAGAAATTGTCGGGTTTCACATTCAAAGATCCAAAATGTTGCAAAGCTTGCAGAAGCAGAGTCAGGAAATTCTAATTTGAAGCGAATTTTCATCCAATTGGAATATTATTATATAATCTCTTTTAAGATTTTACAATTGATTCTTCTCAATTTTATCTCTGATTCTCTCCTTGTATCCTTGTTTTGTTTTATTCTTTCTTTTTTATTATTATTGGGATTTCTGTTTCCCTAAATATAAATTCTCACTTTTTTCTGTCTCTTTGGTCAATTTTCACTGTCTCGTGAATGATCTTTTTAACATCTTTGTGACTTAATTTGTAAGAGTGTTCTTCACTAATTTTCTTCTTAAAGGGTTTGATCGAACAATCAAAAGTTTCCCTTAGTATTTCAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00642.27	zf-CCCH	49	73	7.70E-47
PF00642.27	zf-CCCH	92	116	7.70E-47
PF00642.27	zf-CCCH	138	161	7.70E-47
PF00642.27	zf-CCCH	274	299	7.70E-47
PF00642.27	zf-CCCH	318	342	7.70E-47

Gene family

Gene family	Subfamily
Transcription Factors Family	C3H

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	Molecular Function
GO:0046872	metal ion binding	Molecular Function
GO:0003729	mRNA binding	Molecular Function
GO:0004674	protein serine/threonine kinase activity	Molecular Function

InterPro

InterPro term	Description
IPR036855	Zinc finger, CCCH-type superfamily
IPR000571	Zinc finger, CCCH-type

trEMBL

trEMBL term	Description
A0A1S2XLE0	_

SwissProt

SwissProt term	Description
C3H3_ARATH	Zinc finger CCCH domain-containing protein 3

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G04990	Zinc finger C-x8-C-x5-C-x3-H type family protein
Medicago sativa L.	MsG0580029383.01.T01	_
Oryza sativa L.	LOC_Os01g68860.1	zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Cucumis sativus L.	Csa011612	_
Glycyrrhiza uralensis Fisch.	Glyur000249s00015874.1	_
Codonopsis lanceolata	Cl_chr04_17770T	_
Arachis hypogaea L.	AH07G06750.1	Zinc finger CCCH domain-containing protein 3 like

Expression pattern