Gene detail

Detail information of Am04G026820.1 Annotation

Gene ID	Annotation
Am04G026820.1	ubiquitin-specific protease 12

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G026820.1	mRNA	Chr04	170558859	170579003	+

Sequences

CDS:

>Am04G026820.1
ATGACCGTCATGACTCCTGCTCCCATTGATCAGCAGCAGGAGGATGAGGAGATGCTTGTCCCGCACACGGATTTGGCTGAGAATAATCACCAACCTATGGAAGTTGTTACTCAACCTGAAACTGCCAACACTGTGGATAGTCAGCCTGTTGAGGATCCTTCACCATCAAGATTCACATGGAGAATTGACAACTTTACTAGGATGAATGCAAAAAAACTTTATTCAGATGCATTTGTAGTTGGAGGCTATAAATGGCGTGTACTTATTTTCCCAAAAGGGAACAATGTGGACTATTTGTCCATGTATTTGGACGTTGCAGATTCAGCTAGTTTGCCTTATGGTTGGAGTAGATATGCACAGTTTAGCTTGGCAGTAGTTAATCAAATCCATAATAAGTACTCTGTGAGAAAAGACACGCAGCACCAATTCAATGCAAGAGAAAGTGATTGGGGTTTCACGTCCTTCATGCCTCTTGGTGAATTGTACGATCCCAGTAGAGGGTATCTTGTGAATGATACTCTTGTAGTTGAAGCCGAGGTTCTTGTCCGTAGGATTGTTGATTACTGGAGTTATGATTCAAAGAAGGAGACTGGCTATGTCGGGCTTAAGAACCAGGGAGCTACTTGTTATATGAATTCTCTACTCCAAACTTTGTACCATATTCCTTATTTCCGAAAGGCTGTATACCATATGCCTACAACAGAGAATGATATGCCTTCTGGAAGCATTCCGTTGGCTCTGCAAAGTTTATTCTACAAGCTCCAGTATAGTGACACCAGTGTCGCAACAAAAGAACTGACAAAATCTTTTGGATGGGATACTTATGATTCTTTCTTGCAGCATGATGTTCAGGAACTAAATAGAGTCCTCTGTGAAAAACTTGAAGACAAAATGAAGGGAACTGTTGTTGAGGGAACTATACAGAAGTTATTTGAAGGGCACCATATGAACTATATTGAGTGCATCAATGTGGACTATAAATCAACTAGAAAGGAGTCATTTTATGACCTTCAACTTGATGTCAAAGGCTGTCGTGATGTGTATGAGTCCTTTGACAAGTATGTTGAAGTTGAACGTCTTGAGGGGGACAACAAATATCAAGCTGAACAACATGGTTTACAGGATGCTAAGAAGGGTGTCCTGTTTATTGATTTTCCTCCAGTTTTGCAGCTTCAGCTGAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTTAAGATTAATGATCGTTATGAATTTCCCTTGCAACTTGACCTTGATCGTGAAAATGGAAAATATTTATCACCTGACGCTGATAGGAATGTCCGCAATCTTTACACACTTCATAGTGTTTTGGTTCACAGCGGTGGTGTGCATGGTGGACATTACTATGCTTTTATCAGGCCGACCCTCTCTGACCAGTGGTACAGATTTGATGACGAGAGGGTGACAAAAGAAGACTGTAAACGGGCACTAGATGAGCAATATGGTGGTGAGGAAGAGTTACCACAGACAAATCCTGGATTCAACAACGCTCCTTTTAAATTCACCAAATATTCAAATGCTTACATGCTGGTGTATATACGTGAAGCTGATAAGGACAAAGTAATATGCAATGTGGATGAGAAAGACATTGCTGAGCATTTAAGGGAGAGGTTGAAGAAAGAACAGGAAGAAAAAGAGCACAAAAAGAAAGAAAAGGCAGAGGCTCACCTCTACACTATTATAAAGGTGGCACGAGATGAAGACCTTGCAGAACAGATTGGAAAGGATACATATTTTGATCTCGTAGACCATGACAAAGTGAGGAGTTTCCGTGTCCAAAAGCAGATGTCATTTAACAATTTCAAGGAAGTGGTTGCGAAAGAGTTTGACATACAAGTTCAATTCCAGCGCTTTTGGCTATGGGCAAAGCGTCAAAACCATACATATCGTCCTAATCGGCCATTGACACCCATTGAGGAAGCACAATCTGTTGGACAATTAAGAGAGGTATCAAACAAGGTTCACAATGCGGAATTAAAACTGTTTCTGGAAGTGGAGCGTGGGCCGGATTTACGTCCCATTATACCACCTGAGAAGACAAAAGATGAAATATTACTATTTTTCAAGTTATATGATCCTGAAAAAGAGGAGCTACGTTATGTTGGAAGGCTCTTTGTGAACAGTACCAGTAAGCCGTCAGAGTACTTAACAAGGTTAAATGAAATGGCTGGTTATGATCCCGATGAAGAGATTGGGCTTTATGAGGAAATTAAGTTCGAACCAAGTGTCATGTGTGAGCCTATTGACAAGAAATTAACATTTAGAGCAAGCCAGCTAGAAGATGGAGACATTATTTGCTTTCAGAAAGCTTCTGCCATGGATATCGAGGAACATATCCGCTATCCTGATGTGCCTTCATACTTAGAATATGTGCACAATCGCCAGGTTGTTCACTTCCGTTCTCTAGATAAACCTAAGGAAGATGACTTCTGCCTTGAGATGTCAAGGCTCTTTACATATGATGATGTTGTGGAGAGAGTAGCTCAACAACTTGGTCTGGAAGATCCGTCCAAAATTAGGCTCACCCCACACAACTGTTACTCTCAGCAACCCAAACCTCAGCCTATTAAGTATCGAGGGGTGGAACATTTGTCTGATATGCTGGTTCACTACAACCAGACTTCAGATATATTATACTATGAAGTACTTGACATCCCTCTTCCAGAATTACAAGGTTTGAAAACTCTTAAAGTTGCATTTCATCATGCCACCAAGGATGAAGTGGTTATCCATACCATCAGACTCCCAAAGCAGAGCACTGTGGGAGACGTCCTTGATGATCTTAAAACAAAGGTTGAATTGTCTCATCCTGAAGCTGAACTTCGGTTGCTTGAAGTCTTCTATCACAAGATATACAAGGTTTTCCCTCTAAATGAAAAGATTGAAAACATAAATGATCAATACTGGACATTACGTGCAGAGGAGATTCCAGAAGAAGAGAAAAATCTTGGTTCTCATGATCGTCTAATCCACGTGTATCATTTTACTAAAGACACAACTCAGAACCAAATGCAAATTCAGAACTTTGGGGAACCCTTCTTCTTGGTCATACATGAATGTGAGACTTTGGCTGAAATCAAATTGCGAATACAGAAGAAACTTCAAGTTCCCGATGACGAGTTTGACAAGTGGAAGTTTGCTTTTTTTTCATTAGGGCGTCCTGAGTACCTTCAAGACTCTGACATTGTATCAAGTCGTTTTCAGAGAAGAGACGTGTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAGCATACAGATAATGCTCCTAAAAGATCATATGCTGCTAACCAGAATCGCCACACGTATGAGAAGCCAGTGAAGATTTATAATTAG

Protein:

>Am04G026820.1
MTVMTPAPIDQQQEDEEMLVPHTDLAENNHQPMEVVTQPETANTVDSQPVEDPSPSRFTWRIDNFTRMNAKKLYSDAFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYAQFSLAVVNQIHNKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLVNDTLVVEAEVLVRRIVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFLQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYESFDKYVEVERLEGDNKYQAEQHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYRFDDERVTKEDCKRALDEQYGGEEELPQTNPGFNNAPFKFTKYSNAYMLVYIREADKDKVICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLAEQIGKDTYFDLVDHDKVRSFRVQKQMSFNNFKEVVAKEFDIQVQFQRFWLWAKRQNHTYRPNRPLTPIEEAQSVGQLREVSNKVHNAELKLFLEVERGPDLRPIIPPEKTKDEILLFFKLYDPEKEELRYVGRLFVNSTSKPSEYLTRLNEMAGYDPDEEIGLYEEIKFEPSVMCEPIDKKLTFRASQLEDGDIICFQKASAMDIEEHIRYPDVPSYLEYVHNRQVVHFRSLDKPKEDDFCLEMSRLFTYDDVVERVAQQLGLEDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVLDDLKTKVELSHPEAELRLLEVFYHKIYKVFPLNEKIENINDQYWTLRAEEIPEEEKNLGSHDRLIHVYHFTKDTTQNQMQIQNFGEPFFLVIHECETLAEIKLRIQKKLQVPDDEFDKWKFAFFSLGRPEYLQDSDIVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAANQNRHTYEKPVKIYN*

Promoter(3k):

>AM04G026820.1
GTTGGAGGCTGCTGAAAAGTTCCAGCAAGCATTTGAAAAGCTAGAGTTTGAGGATGTAAGTTTTACCGAATACTTTGGGGATGATGGTACCCCTAACTCTATAGATTGGCAGACTGCTCGGACATTTATGAGGTTTCTTAAGATTTTTTATGATGCTACTAATGTATTTTCAGTTTCTTTGCATGTTAGCATTCATACTGCATTTCACCAGTTAGCCTCAATACACACTGAACTTAAGAATGCCATCAATGATGCCAATTCTGTTTTGAGTAAAATGGGTAGGGAAATGAAGTTGAAATATGATAAGTATTGGGGTAGTCTTCTTAAGTTGAACCCACTTCTCTATTTTGGTGTCATTTTTGACCCCCGCTACAAGTTGAGTTATGTGGAGTGGTCTTTTGATGATATGTACAAAGAAGACCCAATCTTACTAGCTTCATTGACAACTTATGTGAAGAAAGCCTTGTCTGACATGTTTGATTGGTATTCTAAAGTATATGAGCTACAAAATAACACTACCCAAGAAACACCTAGTCCTATAAGCGGGGCTTCTGAATCTGCCACATCTAATTCAGTTGGGAACATCGGAAGGGCTGATGCATTTAAGAAACATTTGGTTGAAAAGAATTCCATAGAAAAGAAGAATGAACTTGAGAGGTACTTATTTGAGCCTAATTTGGATGATGACAAGTTTGATGTGTTGATTTGGTGGAAGCATAATTCATCTAGATTTCCTATATTGTCTAGCATGGCTAAAGATGTTTTTGCTACTCCTATTTCCACTGTTGCTTCCGAGAGTGCTTTTAGCACTGGTGGTAGGGTTTTGGACCCTTTTAGAAGCTGTCTAAGTCCAGAAATGGCAGAAGCACTAATTTGTGCTCAAAATTGGTTGAGGCCTTCTCTCTTTCAATTCAAGGACCTCAACCTAGAAGACCTCTATGACTATGAGTCAGCTGAAAATATAGTATCAGGTATTTCTTTCTTTAAAATTTCAGTTGTTTTGTTTCTTTAAAATTTCAGTTGTTTCTTTAAAATTTCAGAACTTAAATTTCAGTTGTGCAATTAAATTATTAAACTGATTCTGATTTATTTTTGAATTGTAACAAGAATTTGCTCAAGCACAAAACAGTTCTACTGCTAGTTCATCATCTCAATCACAACCAAATAATGGTTGTGATGTGATTTGAGAAGTTAGTGTAAGTGTTGCTGCTGAACTATTAAATACTGATTATTCAATTATGTTATTCTGAACAAAATTATGTTACCGCACTACTAAATACTAATTATTCAATTATGTTATTCTTAACAGGAGTTGGTTTTGGTGTTGGAGATTGAAGTGGAGTTGGTTTGGCCGTTTGGGTGTAGGAGATTGAACATTTGAAGACTTGCATTTGAAGTGGAGACATGGACTTACTGTTTCAGACTTTTATTTAAGGACTGTTTTAATTACTGCTTCTATTAAGACTTATAATTTAAGGACTGTTTTGGAGATTGAAGTGGACTGTTTTAATTACTGCTTCTATTAAGACTTATAATTTAAGGACTGTTTTGGAGATTGAAGTGGACTGTTTTAATTATATGCATGATTTTTTGGAGTGGACTGTTTTGAATTTCCAGGTTGTGTATGTGTATGTTATGGATGAATTTCCAGGTTGTGTATAATACCAGTACCATACTACCATTTATTTTGAATTTCCAGGTTGTGTATGTGTATGTGTTACTGTTAATACTCTATGCCTCTATGGATGAATTATGGCTACAAGTTTAGTTAAATTTGATATCTAGGTATTTCCAGGTTTTGTAAACAAGTAAAAAAAGTTTAATTTTATTGGCCCAATTAGGCCCAACCTGTCCAAAGTATAAAAATGTAAATTTTTTTATAACAATTAAATTGAAAAAGGCTTTAAAAAAAGGATTTTATTGGCCCAATTAGGCCCAACCCGCCCAAACCCAACCGACCAAACCGAACCCGCCCCAACCCGAACCCGCCCCAAACCGTTTGTAAAATTGGGCGGATTTGGGCCTAAACAAAGTGCTTTCGGTTCTACACTTTTTTGACCAATTGGGCCCGAACCCGCCCGAACCCGCCCAACGCTCAGCCCTAATGTTTATATCAACAATATGACCGACCAAGGTTCATAAAATATATTAAAATAAGCTTCCGGTATACTTGATTACAGAAAGGTTAAGGAGGAGCGTTAAAACTTTGGGGCAGCTCTCTTGCCTCTCGAGGCACCTCTAATGAGCGAGAGATTTGTCACTGCTATCCATGCGATGGATACCCGGGTTTACCCAAAAGAAAGGTTAAGGAACAATATGACCTTAATGCAAATATATTTTATTCCTACTCGGTAATATCTCTCTCTCGCTCGTCTTTATCTTCTCCCCCTCCTCTACGCTTACTCTCCTTCTCTCTTTCTCTTCTATCTTCTAATCTCATGATCTCTCTTCCTCGAATCTCTCTCTCTTATATAGTCTCTCGATCCCCTCTCTCCCATTTATATGTATAATTTTTTAGTTATATTATAAATCATTATATACATAGTAAAGAAAATTATAGTAAATTTTACATTTTTTTACTCATATCGTCTATTGTCCATCAAATAGTGTAATAAAATAAATAGTTTTCGAGTACTCTTTTGTCCGGTATTTACTTATTTGCAAACCAAATTGACTTTTAAATTGCGGTACTTTATTTTTTACTGATTTTTTTCTTCAGTTTTTTCTTTTTTTTGTTAAATTTTTTCTTCAGTTTTCTACTAGTCTGAACTGAACACACTCATTTATTTTCATCATATCATATCAAATCACCACAATAGAATAGGAATTACAAAATACCGAAATTACCCAAATCCCCAAATAAAGAGCAAATAGCTTCTTTTCTGGTGATCTCGTTTTCTTACAGTGCTCTCTCGCTATCTCTCTCTCTTTCGCTTTCTCCTCTTCCATTGTCTTCGTAACAAGGCAACGCAGCGTAAGGTCAATTTTGCTATAATTGCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF12436.11	USP7_ICP0_bdg	625	877	1.30E-77
PF14533.9	USP7_C2	887	1097	2.60E-55
PF00443.32	UCH	200	521	7.70E-47
PF00917.29	MATH	62	181	5.10E-19
PF13423.9	UCH_1	200	475	6.10E-16

Gene family

Gene family	Subfamily
Ubiquitin Family	USP

Gene Ontology

GO term	Description	Category
GO:0005829	cytosol	Cellular Component
GO:0005634	nucleus	Cellular Component
GO:0031647	regulation of protein stability	Biological Process
GO:0006508	proteolysis	Biological Process
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR018200	Ubiquitin specific protease, conserved site
IPR028889	Ubiquitin specific protease domain
IPR029346	Ubiquitin carboxyl-terminal hydrolase, C-terminal
IPR024729	Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain
IPR008974	TRAF-like
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR038765	Papain-like cysteine peptidase superfamily
IPR002083	MATH/TRAF domain

trEMBL

trEMBL term	Description
A0AAN9KPZ3	_

SwissProt

SwissProt term	Description
UBP12_ARATH	Ubiquitin C-terminal hydrolase 12

KEGG

KO	Description	Enzyme
K11838	ubiquitin carboxyl-terminal hydrolase 7	[EC: 3.4.19.12]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G06600	ubiquitin-specific protease 12
Medicago sativa L.	MsG0580029348.01.T01	_
Oryza sativa L.	LOC_Os12g30540.1	ubiquitin carboxyl-terminal hydrolase, putative, expressed
Cucumis sativus L.	Csa010544	_
Glycyrrhiza uralensis Fisch.	Glyur000704s00022935.1	_
Codonopsis lanceolata	Cl_chr04_55290T	_
Arachis hypogaea L.	AH17G04880.2	Ubiquitin carboxyl-terminal hydrolase 12 like

Expression pattern