Gene detail

Detail information of Am04G026770.1 Annotation

Gene ID	Annotation
Am04G026770.1	Structural maintenance of chromosomes (SMC) family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G026770.1	mRNA	Chr04	170353497	170387294	-

Sequences

CDS:

>Am04G026770.1
ATGTTTTTATATATACAGTGCTGCTGCTGCTTGAGAAGCACTTGCACAACTTTGGATTGTGTTTCCAATACGATCATGTACGGTTATGACAGTTTGACTTTAAACATGCACATTAAGCAGATTGTGATTGAAGGTTTTAAGAGTTACCGAGAGCAAATTGCCACAGAGGAGTTCAGCCCAAAAGTTAACTGTGTTGTTGGTGCTAATGGATCTGGAAAGACAAATTTTTTCCATGCCATTCGTTTTGTGCTGAGTGATCTCTTTCAGAACTTACGCAGTGAGGATAGGCATGCGCTACTCCATGAAGGGGCTGGAAAACAAGTGTTATCTGCATTTGTGGAGATTGTATTTGATAATTCAGACAATCGCATCCCGGTTGACAAGGAGGAAGTGCGCTTGCGCCGGACTATTGGGATGAAAAAGGATGAGTATTTTCTAGATGGAAAACACATAACAAAAACTGAAGTGATGAATTTACTGGAAAGTGCTGGGTTCTCTCGCTCAAATCCTTATTATGTTGTACAACAAGGGAAGATATCATCCTTAACCTTAATGAAAGACTCCGAACGACTGGATCTGCTGAAGGAAATAGGTGGTACTAGAGTTTATGAGGAGAGGCGTCAAGAAAGTATTAAAATAATGCAGGATACTGGTAACAAAAGAAAACAGATAATCCAAGTTGTACAGTATTTAGACGAGAGGTTGAAGGAACTAGATGAGGAGAAAGAGGAACTTAGAAAATACCAGCAGCTTGATAAGCAGAGAAAATCTCTGGAATATGCCATTTATAACAAAGAAGTTCAAGATGCTCAGCAAAAACTTGCAGAGATAGAAGAGGCTCGAACCAAGGTTTCTGAAGTATCGACAAAAAAGTATAATGATGTTCTTGATGCACATGAGAAATCCAAAGATTTGGAGAACACATTGAAAGATATAACAAAGGAACTTCAGAACTTTACCAAAGAAAAAGAATTTATTGAAAAGCGACGAACAAAGGCATTAGAGAAGCACACTGAGCTTGAGCTTGATGTCAAAGACTTGCAAGAGAAGATGTCGGGAAATATCCGAGCCAAAAAAGATGCTGCAAGGCAACTGGATTTACTTGAGAAAGAAATTCAAGATTCAATGGACGAACTGGATAAAATCAGTCCTTTATATGAAGATCAAGTTAACAAAGAAAAAGACATTGGCAAGCGAATAATGGAGCTCGAGAAGAAACTCAGTATACTTTATCAAAAGCAAGGACGGGCAACCCAGTTTTCGAGTAAAGCTGCTCGAGATAAGTGGCTTCAAAAGGAGATTGATGATCTTGAACGGGTGCTTTCTTCTAACACAGGACAGGAGAAAAAGCTGACAGAAGAAATTGAACGGTTTAATGATGAATTACATGGTTGTGATGAGTACATCCAGAGTCGTAGAACAGATATTACTAATTTGGAATCTCAAATTGCTCAGTCACGTGAAGGGTTCAATCATTATAAAGTACAAAGAGACAGTTTGCATGATGAGAGGAAGTCCTTATGGAACAGAGAGAATGAACTTATTGCTGAAATTGATAAGCTGAGAGCAGAAGTTGAGAAGGCTGAAAAGAGTCTTGATCATGCAATTCCTGGTGATGTGAGGAGAGGGTTGAATTCAGTTCGGAAGATCTGCCGGCAGCAAAAGATTTCTGGAGTTTACGGTCCAATTATTGAGTTGCTGAGCTGTGATGAAAAATTTTTCACTGCAGTTGAAGTTACTGCCGGAAACAGCTTATTTCACGTGGTTGTGGAAAATGATGACACGTCAACCAAGATAATTGAGCTTCTGAATAAACAGAAAGGTGGACGAGTTACGTTTATTCCACTTAACAGAGTAAGAGCTCCATCCATCACTTATCCACAGAGTTCCGATGTCATACCTCTTTGGAAGAAATTGAATTTTAAAGAGGACTATACTCCAGCATTCTGTCAGGTATTTGCTAGAACAGTTATCTGCAAGAATCTGGATGTGGCTTCAAGGGTAGCTCGTACTGATGGTCTAGACTGCATAACATTGGAAGGTGATCAAGTGAGCAAGAAAGGTAGTATGACTGGAGGTTTTTATGACCACAGGCGATCAAAATTGAAGTTTATGAATATCATTAAGCAGAATACCGACAGTATACACATTAGAGAGGAGGAATTAGAGAAAGTTAGAATAGACCAAAAGATTGATGAACTTGTTGCTGAGCAGCAGAAGATTGATGCTCAGTGTGCTCATGACAAATCAGAGATGGAAGGCCTTAAACAGGACATTGCTAATTCTAACAAACAGAAGCAGTTAATTTCTAAAGCACTTGCAAAGAAGGAAAAGTCACTCGTTGACGTCCAGAATCAGATTGAACAACTTAAGGCTAGTATTGCAATGAAAAGAACTGAGATGGGCACAGACCTCATTGATCATTTAACACCAGAGGAAAAAAAACTTTTGTCGGAGTTGAATCCTGAAATCAAAGACCTTAAAGAGAAGCTTGTGGCTTGCAAGACTGATCGCATTGAGACTGAAGCACGGAAAGCAGAGCTTGAAACTAAATTAACTACCAATCTTAGGAGAAGAAAACAAGAGTTGGAGGCTGTGATATCATCTGTGGAAGCAGACTCTTTGGTTGGTGATGCTGAATCAAAGAAGCAGGAACTTAGTGATGCTAAAAAATTGGTGGATGGTGCATCAGAGGAGCTGAAGAGTGTTTCTGAAAAAATAAATGATCGATCAAGGCAAATGAAAAAGATCAAAGAAGAAATGAATAAATTGAAGTCTTTGGAGGAGGAGTACGAAAGAAAACTCCAGGAAGAAGCAAAAGAATTAGAGCAATTGCTGAGTAAAAAAAATACATATACTGCTAAAGAAGAAGAATATTCCAAGAAAATAAGGGATTTGGGCCCTTTGATATCAGATGCTTTCGAGACGTACAAACGGAGGAATATTAGAGATTTACACAAAATGCTGCACAGGTGCAACGAGCAATTGCAACAGTTTAGTCATGTAAACAAGAAAGCACTTGACCAGTACATAAATTTTACAGAGCAACGAGAAGAACTTCAGAAAAGACAAGCTGAACTGGATGCAGGAGATGAGAAAATCAGAGAGCTTATATCAGTGCTAGATCAGCGGAAGGATGAATCAATAGAACGCACTTTCAAAGGTGTTGCTCGGCATTTTCGAGAAGTATTTTCTGAACTTGTGCAGGGAGGGCATGGACATCTGGTTATGATGAAAAAGAAGGACGGTGATCACAATGACGATGATCAAGACGAGGATGGTCCTCGTGAAGCCAATCCAGAGGGGAGAGTAGAAAAGTATATCGGAGTGAAAGTGAAGGTCTCTTTTACTGGACAGGGAGAAACACAGTCCATGAAGCAATTGTCTGGCGGTCAAAAAACTGTTGTCGCCCTTACACTTATCTTTGCCATACAGCGATGTGACCCGGCTCCCTTTTATCTATTTGATGAAATTGATGCTGCATTGGATCCACAGTACAGAACTGCTGTTGGAAATATGATCCAACGCCTGGCAGACATGGCAACCACTCAATTTATTACGACAACATTCCGTCCAGAGCTAGTGAAAGTTGCTAACAAGATATATGGAGTGATACATCAAAACAGGGTCAGTCGTGTTAAAGTTATATCCGAGGAAGAAGCTCTTGATTTCATCAATCAAGACCAGATGCACAATGCTGAATAA

Protein:

>Am04G026770.1
MFLYIQCCCCLRSTCTTLDCVSNTIMYGYDSLTLNMHIKQIVIEGFKSYREQIATEEFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSEDRHALLHEGAGKQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGMKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKISSLTLMKDSERLDLLKEIGGTRVYEERRQESIKIMQDTGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSLEYAIYNKEVQDAQQKLAEIEEARTKVSEVSTKKYNDVLDAHEKSKDLENTLKDITKELQNFTKEKEFIEKRRTKALEKHTELELDVKDLQEKMSGNIRAKKDAARQLDLLEKEIQDSMDELDKISPLYEDQVNKEKDIGKRIMELEKKLSILYQKQGRATQFSSKAARDKWLQKEIDDLERVLSSNTGQEKKLTEEIERFNDELHGCDEYIQSRRTDITNLESQIAQSREGFNHYKVQRDSLHDERKSLWNRENELIAEIDKLRAEVEKAEKSLDHAIPGDVRRGLNSVRKICRQQKISGVYGPIIELLSCDEKFFTAVEVTAGNSLFHVVVENDDTSTKIIELLNKQKGGRVTFIPLNRVRAPSITYPQSSDVIPLWKKLNFKEDYTPAFCQVFARTVICKNLDVASRVARTDGLDCITLEGDQVSKKGSMTGGFYDHRRSKLKFMNIIKQNTDSIHIREEELEKVRIDQKIDELVAEQQKIDAQCAHDKSEMEGLKQDIANSNKQKQLISKALAKKEKSLVDVQNQIEQLKASIAMKRTEMGTDLIDHLTPEEKKLLSELNPEIKDLKEKLVACKTDRIETEARKAELETKLTTNLRRRKQELEAVISSVEADSLVGDAESKKQELSDAKKLVDGASEELKSVSEKINDRSRQMKKIKEEMNKLKSLEEEYERKLQEEAKELEQLLSKKNTYTAKEEEYSKKIRDLGPLISDAFETYKRRNIRDLHKMLHRCNEQLQQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHNDDDQDEDGPREANPEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIQRLADMATTQFITTTFRPELVKVANKIYGVIHQNRVSRVKVISEEEALDFINQDQMHNAE*

Promoter(3k):

>AM04G026770.1
TTGAACTAGGATTTTCTTCCAAAAAATTATACGAAAATTATCCTTGATAGAATAAATTGTATTTTTCATCATTGACTTGGTTTAGTTCAAAAATAATTAACTTGCTCTCATTTGAATGCCTACAGATATTGAAACATGCACAATTTTTTTCCCTAAAATTCTCAAAAATTAATAAAAATGTTTTTTTTTTGAAAAAAAGGTTTTGACTTGGGCGGACAAAATTAGGGTATGACACCGCAAACCCATCCTCAAAGTGATTATTGACAAAAAGCATAACCTCTTCAATTTCCTCCAACATTTCTCCATTATCTCTTAAGATCACTACATTACACCTCCTTCTTCTATACTTCATAAGAGAATGGAAGTATTTATAGTTCATATCTCCCTCCTTAATCCACCTCGCCCTAGTTATATCTTTGTTGCAGAGTCACTCAACACCTTTTGAGGTCTAAAGGAACTCTGATAAGAGGTTTTTTTAAAAGTAATAATAATAATAATATTTTTATAAATAAATGATTTTTGTATAAAAGTGATTTTATATAAAATTGACTTTTTAAGTTATAAATAAATAAAAATTAGTTTTTGACCTAAATTATTAAAATAATAAAAAAATTGGTATCATAAGTAATAAATTTTTAAATAAAATCAATGTCACTTTTTAAATATGAAATAAAATAAATACTTTTTTCAGTTTCATTTAGTTATAATTTTATCTTAGTGTCATTTAAATAAAATAAAGTTTGTCAAAAAAAGATTTTAGAGTAAGTCACACATGACCCATTAACTATTAGTAAGAACATAACCCATAATCAGTTATTTACTTGGAGGGTATATTTATGAAATGAAGAATAAGGAGTAGAAATCCAAGTTAAAAAAATGATTTTTGGCGGATTCAAACCCGTGTATCAAGAGACTATGAGCACTTAACCCATTGTGCTAGGAGGTTTTTTTTTTGACGGGGTGCTAGTTGGTTGTTTAATTAATAATTGTTACATTAAATATATGTAGTTTTTTTGGTGAGGTCTTTTTTTAGAGCGAGGTCTATCATTTTGGATGAGGCCTAAAGTAAGAGCTTTATCAGCCATTATCATTAGGGTCGACCTGCTTTAGTTTTGGCTTAATCACAATTTTGGTCACCCTATTTTCACCAACTAACGATTTTAGTCTCCAAGAATTTTTTTCACAAATTTAGTCCCCCTATTTTCACTAACTCACGATTTTAGTCCCCTAAAAACTTTTTTCACGAATTTAGTCCCCCTATTTTCCCAATTTGTAAAATCAAAGCCCCCCTCTAATTTGGTCAAAATTGGCGTTGAGTTGTCAGTCACTTATCCTACGTGGCTGACACTCTAGCTTGCCTTGTTGGAATTTAAACATAAAATTATTATTATTATTATTACAAAATTGGTTTTTTAATTATTATATTTAATAAATAAAAATTCTATCTTCTTCATTCGATACTTCCTCTCCTTTCGCGAACCCAAACCCAACAAACTCAACATCGTTCATTCAAAAGCAAACCATATAAACATCAGCATTGCCTCTAGGAATGTTTGATTATAGTCTCTAAAAATAGTTTTGTCCAAAAAAAGAATAGTTTTGTGTTTATAAAAATTGATAACGTTCTATAAAAAAAAGTTAATGAAGAACAATATTCTTGTGAATTTGGAGTTCAAATTTTCTTCATTAGATATACTTTACTATCGAAGTGAGTTTTGAATCTCTCAAAAAGACATTTTCATACACATGATAGGACCAAATCCACGACAACATGCTTAAGAAACTAATCTATCTGCTCGTGATTATACCTACTGTTCACAAATTCCATATGGTTTGCTTTTGAAGGAACGATGTTGGGTTTACTGGATTTGGGATTAGGGTTCGCGAAGGGAGAAGAAGTATCGAATGAAAAAGAAAGATAGAATTTTTATTTATTAAATATAATAATTAAAAAACAATTTTTGTAATAATAATAATTTTTATGAGGGGGACTTTGATTTTACAAATTAGGAAAAATAGGGGGACTTTAATTTTAAAAATTGGGAAAATATGGGGACTAAATTGGTCAAAAAAATTATTGGGGGACTAAAATCGCGAGTTGGTGAAAATAGATGGACTAAATTCGTGAAAAAAATACTTAAAAGACTAAAATCGTGAGTTGGTGAAAATAAGGGGACCAAAGCTGTAATTAAGTCTTTAGTTTTTTTGACACAAGACATAAGACCTGCTTCGGTTGTTTTGTTGTTTTAAAATTAAAATATGAAAATATAAATGAATTTATATTATTTTAAAAAAATATTAAGATATAAGGTAACTTGTGAGTTTTTGTTTTTCCTGAGCGCTTAAAAAAACAAAAACGAAAATATATTTTGCAGTTTTTGCCGCGTTTTTCCCCCGGTTCTCTCCACGTCTACCCGAACCACAAAGTGCTAAAGTTCACACCCGCAGCGCACGGCTTATCCTTCGCACCCCAAAACACAAAAATAATAACAAAACCAAAAACCGTAGGCTTCAACCTCAACTTGGCTACTCCATTTTACTGAACTTTCTGAGGTTCGTTTTCTCGCACTCTTGAACTTTACTCTTCAGTCAATTCCATTGGTTGCTATAATTTCTTCACATGTTTTTGCGTTTGCTTTCTCTTTTTCAATTTCCTGAAAATTTCTCGAAACCCTAAAACGATCTTCAAGACGGATTTGACTTTGGTTGATTGTTGTTTTACTTGATTTCGCTTCTAAAACGTGAAGGCACACTTCATGCCATGACTTCGAGTTTTATTTACCATCGTGGTAATGCGCTCTCTGTTTTGAGAAGCAAAATTGTCTCGTTGTTGAGAGGATGCTTGCTTTCGTTTCTTATTGAGACTGCTTTAGAATCAGGACGTATTGGAGAAACTATGTGATTTGATTTTTGAATTAACTACAGCTTCACTGGTTCTGTGATAATGATTCGTCATGAAGAAAATGATTTCTGAATTCTATTTTGATTTTACTTTGTATT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02463.22	SMC_N	37	1210	4.80E-52
PF06470.16	SMC_hinge	557	668	1.20E-29
PF13304.9	AAA_21	1030	1189	1.70E-11
PF13175.9	AAA_15	36	329	7.80E-10

Gene family

Gene family	Subfamily
Epigenetic Regulators	CPC5

Gene Ontology

GO term	Description	Category
GO:0003690	double-stranded DNA binding	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0032991	protein-containing complex	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0004672	protein kinase activity	Molecular Function

InterPro

InterPro term	Description
IPR024704	Structural maintenance of chromosomes protein
IPR041741	Structural maintenance of chromosomes 3, ABC domain, eukaryotic
IPR036277	SMCs flexible hinge superfamily
IPR010935	SMCs flexible hinge
IPR003395	RecF/RecN/SMC, N-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase

trEMBL

trEMBL term	Description
A0A1S3DZP7	_

SwissProt

SwissProt term	Description
SMC3_ARATH	Structural maintenance of chromosomes protein 3

KEGG

KO	Description	Enzyme
K06669	structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G27170	Structural maintenance of chromosomes (SMC) family protein
Medicago sativa L.	MsG0380017636.01.T01	_
Oryza sativa L.	LOC_Os02g04050.1	chromosome segregation protein, putative, expressed
Cucumis sativus L.	Csa010312	_
Glycyrrhiza uralensis Fisch.	Glyur000135s00007319.4	_
Codonopsis lanceolata	Cl_chr06_05030T	_
Arachis hypogaea L.	AH17G04740.1	Structural maintenance of chromosomes protein 3 like

Expression pattern