Gene detail

Detail information of Am04G025270.1 Annotation

Gene ID	Annotation
Am04G025270.1	chromatin remodeling 42

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G025270.1	mRNA	Chr04	165303992	165310259	-

Sequences

CDS:

>Am04G025270.1
ATGAACAAGAAAAGGCGTCTGCAACAATTAAACAATCCATTCAATTCTCACCCATTTGAAGCAGTAATATTTGGCTCATGGCATCCTGTGGATTTCATAGAAATCAAGTCAGGAACAATGAGCATGCATTTCGTAGATGATCACCACTTGGCTATGGACAAAGGCCCCTTGTCCGACATTCGAATAAGGTCGAGGAAATCTACTGTATCGGATTGCTCTTGCTTTCTTCGTCCTGGAATTGATGTATGTGTGTTATCAGCTCCTCAAAGTGCTGATAATTCAGATGATTTTCGCCTCGAACCTGTTTGGGCTGATGCTAGAATAAGTTCAATACAGAGAAAGCCACATGAATCTGAGTGCAAATGTCAGTTTTTTGTGAACTTTTATGTTACTCAAGGTTCACTTGGTCAAGAGCTAAGAACTCTTAATAAGGAGATCAAAGTTGTTGGAATCGATCAAATCTCCATCCTCCAAAGACTCGACCACAATCCTTGTGAAAATAAGCACTACCGGTGGGAATCATCCGAGGACTGTTCTTTATTACAACACACCAAATTGCTTTTGGGAAAATTTCTATCTGATATTTCATGGCTAGTTGTTACATCTGTTATAAAGAAGGTTTCGTTCCGTGCAAGATCGTTAGAAAGCAAGCTCGTGTATCATGTTTTGGAAGGCGGTACCGAGTCTCTTATAAATGTTGTTGGTTTCAGACTAGACAATGAAATGTTAGTACCAATTGTTTCTCAAATTGCTATAACTAATACAAAGGGAGACACCAAGAAAGCTGACAAGGTACAAGAATCCCAAGGAGATAAAGCATCGCCATCTTATAATGTTGAGGGCTTACGACGTTCCAAACGTCGTCATGTACAACCTGAACGTTACCTTGGTTGTGGAGTTTTCAATTTGGATGTTGGTTGCTTTAGAAACTTGCCACCGGTTCGGATAGATACACACAAAGATGATGAAATGTCATTGCCATTATCACAGCTTTTTAGTGTGCAACAAAGCTGTCAAGAAGAGGAAGTTGAAAATCGTCAAAAGGCAAAGAAATCGAATACGTCCCCCGAGTTACTAGTGTACACTAGGAAGGCTAAAAACAAAGTGGTGAAGACGAAGACAAAGACGAAGTCAAGTGTTGCTGATGAAAATCCACTTGCTATTATTCCTCTTCCTGTTGAAGAAAATGAACCAATAGCAGTTGATCATGGTGATTTATATGAAAAGGCTACTAGAAGTTATGAACATGAATCATCTGAGATTTCTTCCAAATATCATCATCTCTTTAATAGCCCGAAACCAAGGAAGAATAATATTAATTTGTTAACTTTTGATCCTTATAATCTGCCTGCAAAGTTAGCTGAAGCTGAAAGGAATGGCGAATCTTCTTCGAGATGTCAATATAGCTATGGCAGCGCGAAGTCACAGAGGAACGGTTTAGGTGATCTGGATGGTATGGATCTTGGAAATAAATGGGAAGGGATAAAGTCTAGTAAAGGATCTCAAGATAGAAAAAATCGTTCAACGTATTTGAGAAGTAGAAATCACGGTGGAGAAAGAAGTTATAATCGTAAAGATAGAACCTTAAATGCATATGCCTACAGGGAACTGATAAGTTCATACTTGAAGAATATTAATACAGGGCCAGCCAAAGAAGAGAAGCCTCTTACTGAGCAGTGGAAGCAACACGACTCAACAAGCAGCTCTGGACAAAATGGAGAAACAGATGTAACCAATGGCGACGATGCAGAGGAAGCATCTGAAATCGATATGTTATGGAGAGAATTCGATGTGTCGTTGGCATCGAGTTATCTCGATGACGCTGAGGGTTCAAATGCAAATGCTTCAGCTGAGACTGATGAAAAATTGAATGAAGTTTGTCAGCATGATTTCAGATTGGATGAAGAAATCGGAATTTACTGCCTTAGATGTGGCGTTGTGAAAACCGCCATCAAAGATATCTCACCACCTGTTATTGAAAATTCAAAGTGGCACCAAGAGGAGAAGCAGTGTGCTGAAGAAGTTAAAGAGACCAAAGGTGATGAAGATGATGAATTTAATTTTTTTCAAACTAATGATTCTCCTGAGGAATTAATTTCTGAAGAAAAAGACAACGTTTGGGCGTTAGTTCCTGAACTAAGAGATAAGTTGCATGTCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCGAAATATAGCAGGGTCAACAAATCCAGGACTTATGGAAGCAGAATCCAAAAAAAGTGGTGGATGTGTGATATCTCATACTCCTGGAGCTGGAAAAACTTTTCTCATGATTGCTTTTCTTGTTAGTTACTTGAAGTTATTCCCTGGGAAAAGACCTTTAGTCCTTGCTCCAAAAACAACACTCTATACTTGGTATAAAGAATTTATCAAGTGGGAGATTCCTATACCGGTGTATTTGATTCACGGTCGTCGAACCTATAGAGTATTCAACCAGAAAACATCGACGGTTTTTCCTGGAGTTCCTGGTGTTCCCAAGCCGACTGACGATGTCAAGCATGTTTTGGATTGCTTGGAAAAGATACAAAAATGGCATTCACAACCAAGCGTTCTAATCATGGGCTATACTTCATTTTTAACGTTGATGCGCGAGAATTCAAAGTTCGCGCATCGAAAGTTTATGGCTAAAGTATTGAGGGAAAGTCCTGGGATCATGGTACTCGATGAAGGGCACAATCCGAGAAGCACAAAATCAAGGTTAAGAAAAGTTTTGATGAAAGTGCGGACGGAATTGCGAGTATTACTCTCAGGTACTTTGTTTCAAAACAATTTCTGTGAATACTTCAACACTTTATGCTTGGCAAGACCGATATTTGTTCATGAAGTACTAAAAGCATTGGACGCAAAATACAAGAAGAAAAGGAAAATAAAAGGAGTGGAAAAAGAACAATATTTAGCCGAGTCGCGTGCTAGAAAATTCTTCCTAGATAATATTGCTAGCAAAATTGACTCAGATGTTGGTGATGAGAGGATGCAAGGGCTAAACATGTTGAGAAATTTAACAAGTGGTTTTATTGATGTTTATGAAGGTGGAAGTTCTGATGGTTTACCTGGTTTGCAAATTTATACATTGTTAATGAATACCACTGATTTACAGCATGAGATTCTCAAGAAACTCCACCAAGGAATGGAGAAGTGCACCGGATACCCTCTCGAGTACGAGCTTATGATCACTCTCGCTTCAATACATCCATGGTTGGTCACAACAGCTGTATGTGCAAAAAAGGTTTTCACAAAGGAGGAATTATCTGAGCTAGATAAATGCAAGTTTGATTTGAAAATAGGTTCAAAAGTAAAATTTGTTTTGAGCCTTATTTATCGCGTTGTCAAGAAAGAGAAGGTTCTTATCTTTTGCCATAACATAGCACCAGTCAAATTATTTCAAGAATATTTCGAGAAGTACTTTGGATGGAGAAAGGGTCAAGAAATTTTGGTACTAACCGGGGAACTCGAGCTTTTCGAAAGAGGGCGGATAATGGATAAGTTTGAAGAGCCTGGTGGAGTATCAAAGATATTGTTGGCTTCAATAACAGCTTGTGCTGAAGGAATTAGTTTGACAGCAGCTTCTCGTGTGATTATGTTGGACTCAGAGTGGAATCCTTCGAAAACAAAGCAAGCTATTGCTCGCGCCTTTCGTCCCGGTCAGCAGAAAATGGTTTATGTTTATCAGCTGTTGGTGACAGGTTCCTTGGAGGAAGATAAGTACAAAAGAACTACTTGGAAAGAGTGGGTATCAAGCATGATTTTCAGTGAGGCGTTTGTGGAGGATCCTTCAAAATGGCAAGCTCAGAAGATTGAAGATGAAATTCTTCGAGAAATGGTCGAGGAGGATCGGTCTAAAGCGTTCCATATGATCATGAAGAATGAAAAAGCTTCAACAAACACTTCAACAACAACAAACGGATGA

Protein:

>Am04G025270.1
MNKKRRLQQLNNPFNSHPFEAVIFGSWHPVDFIEIKSGTMSMHFVDDHHLAMDKGPLSDIRIRSRKSTVSDCSCFLRPGIDVCVLSAPQSADNSDDFRLEPVWADARISSIQRKPHESECKCQFFVNFYVTQGSLGQELRTLNKEIKVVGIDQISILQRLDHNPCENKHYRWESSEDCSLLQHTKLLLGKFLSDISWLVVTSVIKKVSFRARSLESKLVYHVLEGGTESLINVVGFRLDNEMLVPIVSQIAITNTKGDTKKADKVQESQGDKASPSYNVEGLRRSKRRHVQPERYLGCGVFNLDVGCFRNLPPVRIDTHKDDEMSLPLSQLFSVQQSCQEEEVENRQKAKKSNTSPELLVYTRKAKNKVVKTKTKTKSSVADENPLAIIPLPVEENEPIAVDHGDLYEKATRSYEHESSEISSKYHHLFNSPKPRKNNINLLTFDPYNLPAKLAEAERNGESSSRCQYSYGSAKSQRNGLGDLDGMDLGNKWEGIKSSKGSQDRKNRSTYLRSRNHGGERSYNRKDRTLNAYAYRELISSYLKNINTGPAKEEKPLTEQWKQHDSTSSSGQNGETDVTNGDDAEEASEIDMLWREFDVSLASSYLDDAEGSNANASAETDEKLNEVCQHDFRLDEEIGIYCLRCGVVKTAIKDISPPVIENSKWHQEEKQCAEEVKETKGDEDDEFNFFQTNDSPEELISEEKDNVWALVPELRDKLHVHQKKAFEFLWRNIAGSTNPGLMEAESKKSGGCVISHTPGAGKTFLMIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFNQKTSTVFPGVPGVPKPTDDVKHVLDCLEKIQKWHSQPSVLIMGYTSFLTLMRENSKFAHRKFMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVRTELRVLLSGTLFQNNFCEYFNTLCLARPIFVHEVLKALDAKYKKKRKIKGVEKEQYLAESRARKFFLDNIASKIDSDVGDERMQGLNMLRNLTSGFIDVYEGGSSDGLPGLQIYTLLMNTTDLQHEILKKLHQGMEKCTGYPLEYELMITLASIHPWLVTTAVCAKKVFTKEELSELDKCKFDLKIGSKVKFVLSLIYRVVKKEKVLIFCHNIAPVKLFQEYFEKYFGWRKGQEILVLTGELELFERGRIMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYKRTTWKEWVSSMIFSEAFVEDPSKWQAQKIEDEILREMVEEDRSKAFHMIMKNEKASTNTSTTTNG*

Promoter(3k):

>AM04G025270.1
GGAAATTTCCGGCGGATTTTTTGGCATTTGCGGCGGATTTTTAAATTTTTTTTTTTTTTTTAAAAAAAAGAATTTTTTTTTTAAAAAAAAAGTTAAAAAAATCCGCCGCAAATTTCAAAAATCCTCCGCAAAAGCCAAAAAAAAATTCAAAATTTTCGCCGCAAATATGAGTGACAATCATGTGCTTAGTTGGTAAGAAGTATCGAAAATGTATCTGAGAAGTATTCTTAGTTAGTAAGAAGTATCAAAGATATATCTGAAAAGTATCGAGTGAAATATTTTTTAAAATGAATTAAAAAATTATTGGATACTCTTTGAGTACGTATCGAAAAATATCGAGTGTGTATCGGTATCGAATACATATCCAACATGAATACGTTGTCATTTTTGAAGTATTCGGGCTTCATAGACTCCCATACATCTTTGAGTCAGCTCTAAGCAATCTCTACCATTGATTTAAGATCAAAACATTAAAAGTTGTAATGAAAGTATGTAATTAATAATTTTCGCCACACACTAAACAATCTCAACTATCAATTTGAGATCAGACAAATCAAATCATATTTTTTACTAAGGATTTAATTTTTTTTATATATAATGTTGGTGTATAAATATTCTACGTCATCAATCGATTACAAATGGATATGTCATTAAAAAGAAATGAGTTAACTCATAACTATTTTATATGGCAAATAAACACTACGTATACACACTAACACTACTCACATCTGAGTTCAAATCTGAGAACTGACGTCTTGATGTTGCTAAAATTGCCGAGACAACCAAATAATAAGAGATACTATCTTATATAGGACTGCAAGTGATGAATAGTGGTTAAACTCGTTTTACTAAAAGATCAAGAATCGCATCCCTTTCCATACCATAAGAGTTTTTTTGGTAGAAACAATAATAGTAATTTAATCAAAATAAAGTATAATTTTGGTTAGACAATGTAAACAATTGTCTTTCCGACACATCATTAAGACATAGTATATTTTATTATGTGTTGTTGAAAACACGTTAAAGTTAAATGATGTTTACTGTTTAGCTCCGTAGAGTGGTGGGGATAAGTACCTCGCAACCTGGTCCAGTCCCATTAAACCACGAATATCAAAATCAGACCACCATTGGCATTTTCTTCCTCTCTCTCTCTCTCACTCTCTCTTTCTCATGCAAATGTGCGAAATTCAAGGCCTCTTTCTACGTTTCCCTGTCTTGTCTATTTGCTTTCACTTCACACTTTATTCACACCCACTTTACTCCACAATATAAAAAAACTATATTTTTAGTGGTCAAAAATATAAATTATAAAGTCTATTTTTAAGATGTACAATTCTCATATTTATTTCTATTTCTTGACAAAAAAAACTTTATATCTATTTAAGTGATATAATTAAAAACGATATCATTAATTATGAGTATAAATATTTATTTAATGAAAAAATAATTTCGAAAAGAAGTTAAAATTTTAGCCTATTAAATAAGAATAATTGATTATAATGTCATTCATTAGTCAGTGTAATGTAAAAATTTGTTTGTTATATTATGGACTTAGCTAAAAAAATTGTCCTATTTTTTTTGACAACAAAATTGTCCTATTTTGATTGCTGTTTTACTGTATCAATGAATCATAATTTTTTCCCTATTATATAGTAAAGTATTAATATAGTTTTCTTATTTAAGTACTCAATAAAGAGTATAAAGTGGCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATAGAAAGTACTATTACATTATTGAATTCTGAATTATTATTTGTTTTTTTTAGTCTGTGTGACACAACTTTCAAATAAGATACTCACTTCGTCTCATTTTAATTGTCCTGTTTATCATTTTTCTCTGTATCAAAATTATCTATTATTTTAGAATTTCAATACAATATTTATTATTATTTTCTAACAATACCCTTACTTTTGAATATCAATAACCGTGCATTTGTTCTAATCGAGAAAAGTGAGATTACTAATGAGTTAATAGTGTAAGGGTGTTTTAGTCCTACTACATTTTTTACCATAATAATTAGCATAATCAATCATCTTCTTAATACTCGCGCATAACATTAAACGACAAATAAAATGAGAGGAGCGAGTAGTAGTACTTTAGTATTTCTCTCTCTCTCCCAGCTCACTCATTCAGTCACTCAGTCACTGACTTTCAACTACTTAGTTTCCAACAACATTATTACCTCATCTGTTTTCCTCTGCTCCTCTCTTTCTCTTGATGACGCTTTAACCTGTTCTTCAGATTCTTCTTTCTCTCTCTTTGGTAAGTAGTATTCCATCACTTTTTTTTCTGTATTATCAGATTACTACGCACAGCATTTCTAAATCAATCTAAACTCTGATCATCATCATCATCATCATCATCTGGTTGATCCACCTGCTGAACTATCAAACTCTTATGTTTTTCACTTTCACTTTTGAGTCTTTATTTTTCACTGAAGCTTTCTGAACTTTTCAGTTGTTTGTATGAAAGTCTTGTGTTTCTGGCTTTCTGCTACCCAACACAACATTTGATGATCCATGTTCTGTTTCTTGTTAGCATGTTTGATTTTTAAAGGAAAATAAAACAGATTAACAGATTATTTTTTAGTGAAAAGATTAACAGATTTTACACTTTTAGTTTTTTTTTTATCTTTTCTCCATTTTAAGTAAAAAAACCCCGAAAGAAAGCATTGACTTGTTTCATAGACCATGTAAAGTTATACCCCCTTTCCATATGTGTGAAGCATATACCATATTATCGTTAATTTTCCTTACTGTCAGAAAAATAACAGATATGAAATTAAACACATTAGAGTTTTTTTTCACAAGATTTTTATATCTATTGTAATTGTGTTACAATGATTAATTAGCATGTGTTTTTGTGAATGAAGCTTTGATTATAAGTGGGAGAATTTTTGTGCTGCTGCAGTTGTCAACTAGCTATTGCAACCAATT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00176.26	SNF2-rel_dom	717	942	1.30E-20
PF00271.34	Helicase_C	1105	1221	1.20E-15
PF04851.18	ResIII	716	927	1.80E-09

Gene family

Gene family	Subfamily
Transcription Factors Family	Others
Epigenetic Regulators	CHR42
Transcription Factors Family	SNF2

Gene Ontology

GO term	Description	Category
GO:0005524	ATP binding	Molecular Function
GO:0016787	hydrolase activity	Molecular Function
GO:0003682	chromatin binding	Molecular Function
GO:0016301	kinase activity	Molecular Function
GO:0004386	helicase activity	Molecular Function

InterPro

InterPro term	Description
IPR038718	SNF2-like, N-terminal domain superfamily
IPR000330	SNF2, N-terminal
IPR044567	SNF2 domain-containing protein CLSY/DRD1
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain

trEMBL

trEMBL term	Description
A0A8B8JHZ5	_

SwissProt

SwissProt term	Description
CLSY2_ARATH	SNF2 domain-containing protein CLASSY 2

KEGG

KO	Description	Enzyme
K10875	DNA repair and recombination protein RAD54 and RAD54-like protein	[EC: 5.6.2.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G20420	chromatin remodeling 42
Medicago sativa L.	MsG0580029253.01.T01	_
Oryza sativa L.	ChrUn.fgenesh.mRNA.85	expressed protein
Cucumis sativus L.	Csa016117	_
Glycyrrhiza uralensis Fisch.	Glyur000440s00021863.1	_
Codonopsis lanceolata	Cl_chr07_00960T	_
Arachis hypogaea L.	AH07G07710.2	SNF2 domain-containing protein CLASSY 2 like

Expression pattern