| Gene ID | Annotation |
|---|---|
| Am04G025140.1 | plant U-box 13 |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am04G025140.1 | mRNA | Chr04 | 165054963 | 165057008 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF04564.18 | U-box | 283 | 354 | 1.40E-23 |
| PF00514.26 | Arm | 423 | 460 | 1.50E-23 |
| PF19584.2 | MCAfunc | 41 | 149 | 2.70E-06 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | U-box |
| GO term | Description | Category |
|---|---|---|
| GO:0009609 | response to symbiotic bacterium | Biological Process |
| GO:0036377 | arbuscular mycorrhizal association | Biological Process |
| GO:0009610 | response to symbiotic fungus | Biological Process |
| GO:0002237 | response to molecule of bacterial origin | Biological Process |
| GO:0009877 | nodulation | Biological Process |
| InterPro term | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR003613 | U-box domain |
| IPR045210 | PUB protein, U-box domain, plant |
| IPR016024 | Armadillo-type fold |
| IPR011989 | Armadillo-like helical |
| IPR000225 | Armadillo |
| trEMBL term | Description |
|---|---|
| A0AAN9Q460 | _ |
| SwissProt term | Description |
|---|---|
| PUB1_MEDTR | U-box domain-containing protein 1 |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G46510 | plant U-box 13 |
| Medicago sativa L. | MsG0180005172.01.T01 | _ |
| Oryza sativa L. | LOC_Os03g16824.1 | spotted leaf 11, putative, expressed |
| Cucumis sativus L. | Csa005561 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000023s00004880.1 | _ |
| Codonopsis lanceolata | Cl_chr03_46820T | _ |
| Arachis hypogaea L. | AH07G07910.1 | RING-type E3 ubiquitin transferase like |