| Gene ID | Annotation |
|---|---|
| Am04G024940.1 | high mobility group |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am04G024940.1 | mRNA | Chr04 | 163436075 | 163441058 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF03531.17 | SSrecog | 106 | 174 | 1.90E-26 |
| PF17292.5 | POB3_N | 7 | 97 | 1.20E-23 |
| PF00505.22 | HMG_box | 561 | 629 | 7.70E-23 |
| PF08512.15 | Rtt106 | 350 | 439 | 7.30E-20 |
| PF09011.13 | HMG_box_2 | 558 | 628 | 1.90E-16 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | HMG |
| Epigenetic Regulators | SSRP1 |
| GO term | Description | Category |
|---|---|---|
| GO:0042393 | histone binding | Molecular Function |
| GO:0006281 | DNA repair | Biological Process |
| GO:0003677 | DNA binding | Molecular Function |
| GO:0016491 | oxidoreductase activity | Molecular Function |
| GO:0016020 | membrane | Cellular Component |
| InterPro term | Description |
|---|---|
| IPR024954 | SSRP1, dimerization domain |
| IPR038167 | SSRP1 domain superfamily |
| IPR011993 | PH-like domain superfamily |
| IPR013719 | Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain |
| IPR036910 | High mobility group box domain superfamily |
| IPR009071 | High mobility group box domain |
| IPR035417 | FACT complex subunit SSRP1/POB3, N-terminal PH domain |
| IPR000969 | FACT complex subunit SSRP1/POB3 |
| trEMBL term | Description |
|---|---|
| M5XGJ6 | _ |
| SwissProt term | Description |
|---|---|
| SSRP1_VICFA | FACT complex subunit SSRP1 |
| KO | Description | Enzyme |
|---|---|---|
| K09272 | FACT complex subunit SSRP1/POB3 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G28730 | high mobility group |
| Medicago sativa L. | MsG0580029194.01.T01 | _ |
| Oryza sativa L. | LOC_Os01g08970.1 | SSRP1-like FACT complex subunit, putative, expressed |
| Cucumis sativus L. | Csa017398 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000286s00016498.1 | _ |
| Codonopsis lanceolata | Cl_chr05_21600T | _ |
| Arachis hypogaea L. | AH10G24240.1 | FACT complex subunit SSRP1 like |