Gene detail

Detail information of Am04G024570.1 Annotation

Gene ID	Annotation
Am04G024570.1	myb domain protein 109

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G024570.1	mRNA	Chr04	162174378	162177574	-

Sequences

CDS:

>Am04G024570.1
ATGTCCGAACTGAACCGCTCCGCGGAACCAACCGCAACCGCACACAATGGCGCCGTCGTCTATACTGAGCCTGTCATCATCGGCGAGGAGTCTGAAATCGCTGCCGGAAAAGTGAGGGGGCCTTGGTCTCCGGAAGAGGACGCTGTGCTGAGTCGATTGGTAGCACAGTTCGGAGCGAGGAATTGGACCATGATCGCTCGCGGAGTACCAGGGCGGTCTGGAAAATCTTGCCGACTACGTTGGTGTAATCAGTTAGACCCTTGCGTGAAACGCAAGCCCTTTACTGAGGAAGAGGATAGTCTCATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAGCTATTGCAAGGCTTCTTCCAGGTAGAACGGATAATGCTATCAAGAATCACTGGAATTCTACACTGAGGCGCAGGTGTATGGAGCTGGGAAAACATGTGCCAACACATGGTGATATGATGGTAGATGGTAGCTTTGAGAAAACAATGGCATCTTCTGAAGAAACCATTTCAATTGGAGATATCAATCCATTGAATCCTTCAGAAATCAGAAATGTCATGATGGAGAATGAAATTAAACAGTGTGAAAATAAACCTCCAACAAAAGATGGTGCTGAAATACAGGCACATCCTACTCTTTGTCGACCAGTAGCCCGTATTAGTGCATTTAATGTTTATAATCCTCAAGGCAGTCCTACAACTGGATCATGTTCAAAGATAGTGCCTAGGCAGGGCCCTTTGATGCCACCCCCCAAACCACAAGAAGGAGCCTTCAAGTTATTTGATGGTTTTGAATGTGAGCCCATGATCCCATTGCAATGTGGTCATGGCTGCTGTGCAGAAAAATTGAGGGAAAGTCATTCTCATGGTCATGGTTCGCTATTAGGTCCTGAGTTTGTTGACTATTTAGAGTCCCCCTCTTTCTCTGAATTGATTTCGATAGCTACAGACATAAACAATATGGCTTGGATCAAGAGTGGCCTTGAGAACTATGGTGCCGGAGTAACCGACAATACTGGAAATGTGACATCATCCCAAGGGACTGCCACTGCCTCCCAAGCAGGCTTCTTAGGACAAGGTCTAAAGAATGGTTACAAGCAATTCGATGAGGTACCTGGCAGGTATAATATGGGTACGGTGCAAGAAGCGTTATCAACAAAAATACCCAGGCAAACTTTTGCAATGCCTGCAAAAGTTTGA

Protein:

Promoter(3k):

>AM04G024570.1
CAAGCCTAATTCCTTCGACATTCCTCGTTTCGACCATTTCAGTATAGTCTTCAGGAATGTACATTTGCAGCTTCGACTCAAAAGTGGCAAGAAGCCACAATTGGAACAACCAAATTGGTCCAGAGACCAAGTAATTTCCTTCAGGCTTAAGTTCTTTTAATGCATGAACTCCTTGTCGTAAGCCTTCATAAAGTGATCCTAAAATAAGTTGACCAAGGTTTACCTCTCGACACTCATGTAGTTGAATGGCCAAAGGAATGTACATTTTTGCCACTTGGAGTGACGAAGAGCAGAAAACATAGAAGGAGAGCCACAAAGTGAGAAAAGCGATGTGTTCTTCGTCAGAAACTTCTTCAGTGGTGATGACATGTTTGTCTTCAATGTATCCTTTGAAGGAAGCACGCTTGAAGTCGAATTCATGGTTATTGTCAGTAGTGTTAGGGTCGAAAACTTCTCCTATTGGTTTAAGTCCAGTTATGGCAGCCACATCTAACAGAGTAGGAGTGAGCATACCTCATTTCAAATGTAGGCTATTGGTGGTTAGCTCCCAAAAGTGTAAAGCTGCAATAAGCATTGGGCTTTGATATCTAGGCCCATATCTCGACAGCTGAATCAGGTCGAAAATGCCTTGTGCTTTCCAGGTTTCTCCTTTCTTCGACTCAATTTTGTTAAGCCAGTTAATGTAAAGTGGGTGATTCTTGTCGACTTGTGGTGAAGACCTAAAAGCCCTATTTGTGTTACTCATGAAATCCATCACATATGGTCCTTTGTTGAAAATCCTAGGGCTATATCTATGATAGCTAGGGAAAACCTCTTTGATTTGGTCAGAATCATCACCAGAGTGAGGAAGAGGACCTAAGAATGCATGCTTGTAAGGTTTAGGAGAAGGAATTAGTGCCTAAGATTGCAAAATTTTTGCTTCTTCTTCTGTCAAAGCTGGTTCAGCAACGAAAGGCTGTTTTCCAGAAGCTACAGTGCCAGAAGTTTGAACATTGGAAGATGACGCCATTAATGATAGTTCTGAGTTTTTCAAATGGTTTCGCTGCTTCACTGTTCGGGTTTTATAGGAATAGAGGTCGCGTAGTGTTGGATGAAGAAATGAAGCTTCAAAAATGGAGTTCTCTGGTGCGTAAATGCTGGATTTCACAAGGAAGAAGAAGAGAAAGGGTTCGCAGAAGCAGAGAGAGTAAAAAAGGGAAAATGAAATGAAGAAGTTGCTTTTATAGCTGTTTTAGCAAGAGAGAGCAAAGGTAAACCTTTAGGTTTTCTTTAAAGAGCAGTTATTTGCAATAAGTAGTGGGGAGTTACAATGCAAAACGTGGCCCACTAAATCTGAGATAACGGCGCCATAAAGTGCTCTTTCTGGAAGTGTCTTTTCAAAAACGTCATTTTCTGCCTTCATTAAAAACTCAGTCGAAAAAGACATTTTTGGGGGGCAATTTGTTAGCCTGCATTTTCGACAGGTTCAATTAAATGCAGTCAACGAGGTTTGACTTGCTAATTTCAAGAGGAAAAGTGTTGATTTCGACAGTGAAAAGTTTTCCAAGAAGGTTCGACGCAGTGCTTAACTTAGTGGAAATTGAAGAATTGAAGCCAATGGTTCGACTAGAAGAAAGTTAGTGATAGATCAGAAGTCATGTGCTCGTTGTTAAAACAACATAGCAGTTATTGTGGTCGAAGTCATGGCAGTTACCATTTTTTAAATTCTATGTATAGTTAGTTAGTTATTGTGTTTCCCTCCTTGTATAAATAATAGTTTTTCATAGGAAAAACGGGTCACAAACTCACATACAGAATTCTGAAACTCAAACTTCCAACATCACAGAGAAAACGAGTTAGAGAACAATGTATGAACTTGTGCACCATTCTCTTTACAATTAATGCAATTTCACTTTTACTTTCTTAAGTTTTCTGCATTTTATTTGTTTTCTCTTCGCCTTCTACTCAGAATTCTCCTTTCTGGAGATAACTTTGACGGTTATCTTCTTACTTTCAAGTTTAAACCGTAAGAACACTCATAATTTCTGGAAAAACTTTAACACAAATGTTCTAGGATTTTCTAGTTGATCTTGCAAGCAGCATTAATTTGTAACTAGAGGTGTTTACAAAAAACATGGTAAACAGAAATTCAAGCCAATCTTCACTGATGGCATTAGCACAGAGTTTATATAAGGCATCACAACCACTTATCCAATTGTCTTTCCAAAATCTAGTTGTCTCACCATTGCCCACGTTCCAGCAAAGGATGTGAGTTTGCTCGAGGTCTTCATGAAAGTTGTAGATAATTATCTTATCCTTCCAACGATATAACATTCATAATTTTTCGAGACCTAGGCAAAATATAATTCTGAAAAGTTCAATTAAGCCCAAAATAAATTCAAAGTTATGAAATGCATTATAAACTCGTCAATTAAGCACAAATAAATATTAACACACTAAGTATAAGAGTCGATTAGAATACAAATTTTGTGTTCATCAAGGGGGTACGAAATGGTAAACTAATTTGTCCAGCCGAACAACTCTGGGCTAAACATGTTTACCACACCCAAGATGGGCTCAAATGAAGATCCAACAGAACCATGGGCTGGACTTGCTTATCTAAAAGCCCAAGTCCATAGTTGGAAGAGGAAACTCGTAATCGGGAAATGCGATTACTTCAAAAATTCAAATCCCGAAGGCGGTTATTGTGTTCCATCAAAGAGTGTCAACACCGTAATTTACGCTTCCACCCAGGGGCAATTTCGAAATACTGAATCCGACGTGTCACATTGATTACATGTTTTGAAGAAATCCAACTCCTAATATCCCCGAAACTGCGTCGTTTCTTATACACTCAACGTGGACAAATCAGACATTTCAAGAAAAGCATCTTGCAAAATGGGAAAAGTAGAAGGCGAAACAATTTGCGCGTGCCTTCAATAGGTATTGCGGTTAGTTAGAAAGAGAGAGAGAAAAAAACTGACAGTAACACACAGCGAAGCAAAACAACCAACAACCGCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00249.34	Myb_DNA-binding	39	85	2.50E-33
PF00249.34	Myb_DNA-binding	91	135	2.50E-33
PF13921.9	Myb_DNA-bind_6	42	101	7.30E-21
PF13921.9	Myb_DNA-bind_6	94	139	7.30E-21

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Gene Ontology

GO term	Description	Category
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0005829	cytosol	Cellular Component

InterPro

InterPro term	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox-like domain superfamily

trEMBL

trEMBL term	Description
A0A151S1V5	_

SwissProt

SwissProt term	Description
MYB1_ARATH	Transcription factor MYB1

KEGG

KO	Description	Enzyme
K09422	transcription factor MYB, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G55730	myb domain protein 109
Medicago sativa L.	MsG0580029215.01.T01	_
Oryza sativa L.	LOC_Os01g63160.1	MYB family transcription factor, putative, expressed
Cucumis sativus L.	Csa017970	_
Glycyrrhiza uralensis Fisch.	Glyur000864s00030259.1	_
Codonopsis lanceolata	Cl_chr05_43840T	_
Arachis hypogaea L.	AH17G08060.1	Transcription factor MYB44 like

Expression pattern