Gene detail

Detail information of Am04G024280.1 Annotation

Gene ID	Annotation
Am04G024280.1	Ribosomal protein L10 family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G024280.1	mRNA	Chr04	158583811	158586271	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM04G024280.1
TCAGTTGTTCTTGCCATCAATAAGACTGTATCAGAATCTCCCTGAGCATAGCAGGCCTCCTTTTCATCTTTCTTCTTACCCTTTCCTTTGCCAAACCATCACTCATTAGCATAGTGCCCATGTTTGTCACAATTCTAACACTGAATTTGGTTTTGCTAGGGCCTTATCCTCTTTTAGAGAACTCAGCTCTATCATTGTCCTTCCAAGAATTAAATTTCTTGGTAAGTTTTCCTTTTCCACCCTGTTTCCAAGGCTTCTTAGGATCTCCTTTCTTATTGATTTGGGCCTGCAGAGCCTGCTCACTAACCTTGTCATAAAGCTTGTTATGCGCTCTTGCCTCACGAGCCTCTAGAGTGCTTTGCAACTCTTCAATGGTCATTTTCCACACCTCCTTGGATTCCTGTACAGCTGTAACAACATAGTCATATTTATGATGTAAGGATCTTAAGATCTTTTCACATACCTTGCCATCACTAATTTCCTCTCCACAAGAAGTCATTTGATTGGTGAGACTCTTCACCCTCTTGAAAAGATCAACAATCTTCTCATTATCTTGTATTTCCAGCAACTCATATTCCCTATACAATCTTTGGAGTTTTACTTTCTTTTGTTTTCTCCACCAAAATAACACTTTTCTAGGATATTCCATGCTTATTGTGCCGATTTTTCCTTGGTTATCTTCTCATAATTTGCTTCATCAACACTTTGGTGAATGAACCAAAGTGCCTTGAAGTCCATTTTCTTCTCTTCTTTGTACGAGCTTGTTCTTCACATGTTGCTTCCTTACCTACTTCTTTGAGCCCTTCTGTCACAAGATATGTGACATCTTGAAAAAACAAATAAAATGATCATTTGGTTGCTCACTTGCTCCATCGATCCCAAATTTTCCCTTAAAGGGTTGGGAACTAGGATGGGAATTTTCCCTCTTCGAAACCCTTTTTCATCTTACTCACACTCTCGTGTTTCACTCAAGGATTTTGTGCTGATACGTTTCTTTCAAGAACTCACCCTTTCTTGTTTCAAGAATCTCAAGAAGAGCTCTGATACCAAGTCGTTAGATAGGAAAAGCATACTAAGAAAACAACAACTATGTGCAAGGAAATATTGAATGAAAAGAGAGTAATTCGTTCATTGATATTCATTGTATTTATACAACATCTCATTAGTGTAATAAAGACTAAATAATATAACTGTCATATCAGACTATGACAATTACTAATAGTAACTACCTAACAGCTCTCGAGGCTTCAATTACATATTCTTACAACAAAATCCATAACTAAAGAGAGTTAGACTCAAAGGGAGGGGGGCGAACTAACAAAGCGACTTGTAAATGTGAGGCAGCGTGAAGTGAGAGGGAGAGCGAGGGTTTGTATTTTTCTTTCGGGCCCCTAAAAAATTTAGACTGGGCTGGGCCTTGTGCTATTGCCCAACTTGCCTTGTAGAGCCTAATCACCGGGGTTGAGTATCAATTTGGTCCATGATTGAACCAAATGTTAAGGGCCAAACTGATACTAAATTGTAAAAGTCAGAGACTTGATTGATATTAAGTTCTAAAAGTCGGGGAATAAATGTGAGATTGAAAATCTTAAAGATTAAACTTAAATAACACTTAGAAATGTCATAAACTAATTAGATATATCGTTAATGTCAGGAATGATATTGAACTTTTCTCAAACTTGAGCGATCAAATCGACTATTAACTCTAAATTAATTCCTGTGTTTTTTTTTGATTTTTTTTGGGCCGACCCTATACATCAATCCATTTATCGTGATCTCTCAACTGAGGTGTAGATAGCAATTTGAATAAACAATAAACAAATGGACATCACTTTTCCCACACCCCTCCCTACTCACCCCACACCCCCTAACTCTAAATATTCCAAAACTACCCTTAATGAGATGACGTGTTTACATGCGATTCGGTTGAGGCCAACCGAATATATTCGACTAGGCCCAACCAAACATGTATTTTTTTGAGACACACCTTTTTTTACCTCTTTTACACTATTCGGTTGACCTCAACCGAAATATTTCGGGTGACATCAACCGAACGTATATTACCTCTCCACGTTTCTTCTACATTTTGTAGGCTCAGTCCCCATTCCTCCTTCTCTTTTAGGTGTTGAGCACTAACTGAGTCAAGCTTTATTTCTAAGCTCCTTATATGCTGCTTGGCATTTTCAAGGGTTGTGTCTCTAAAATTCACAAAATAAGAGATTGTGATTAGCCATAAAATTTTTCAATAATAATAATAATGACACATTTCTGCAAGTTTTCCACAACATCGGTTACTTGTGATTAGCTATAAGATTTGTCAATAATAATGGCACCTTTTTGCAAGTTCTTTCTCATGATTGGCCATAACAGATTAAAGATCTTGAAGAACCTTATCCCTTTCTTCTGTTAAGAGCTTCCTCGAGAGTTTTGAGTTGTTCGGAGTCTTTAGCTGCAGCCAGATCTGCATCTTTCTTTTGAAGAAAGAAGAAATACACGTTTGGTTGATGTCAACCGAAATATTTCGGTTGATGTCAACCGAATAGTGTAAAAGAGGTAAAAAAAAGGGGTGTGTCTCAAAAAAATACACGTTCGGTTGGGTCTAACCGAAATTTTTCCGTTTACTCTAATCGAATCAGTGAAAACAACGCACCTCATTAATGGTCTTTTGGTCATTTTGCAGGTTTTGGGGGGTGTAGGGTGAATTGGGAGGGACGTGGAAAAATATGGGCCTAAACAAATTGTATACAAAAATGCATCTATTTGCAAAGCCTATCGGGCCTTCAAAGGTTTTCTTTCAAAATATCAAAACCCTAATTTAACTTCTTATTCTTATGCTTAGCGATTTCTTTGAACTCACCATTCACCATTTCTTCTCTTCTCTTCGTTCCAGAAAAAAGAGGAGGTTAAAGCGACGGCACTTTCTTGCTGTCCGCCTTGACTGAGCCACTGCTTAATCTTGGCCCTCAGTTTTACCTTCTGAAACCCTAAACATCGTCATCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00428.22	Ribosomal_60s	234	321	1.50E-22
PF00466.23	Ribosomal_L10	7	108	8.20E-21
PF17777.4	RL10P_insert	114	183	2.00E-20

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0070180	large ribosomal subunit rRNA binding	Molecular Function
GO:0002181	cytoplasmic translation	Biological Process
GO:0022625	cytosolic large ribosomal subunit	Cellular Component
GO:0000027	ribosomal large subunit assembly	Biological Process
GO:0003735	structural constituent of ribosome	Molecular Function

InterPro

InterPro term	Description
IPR001790	Ribosomal protein L10P
IPR043141	Ribosomal protein L10-like domain superfamily
IPR040637	60S ribosomal protein L10P, insertion domain
IPR030670	60S acidic ribosomal protein P0
IPR043164	50S ribosomal protein L10, insertion domain superfamily

trEMBL

trEMBL term	Description
A0AAN9Q724	_

SwissProt

SwissProt term	Description
RLA0_SOYBN	Large ribosomal subunit protein uL10

KEGG

KO	Description	Enzyme
K02941	large subunit ribosomal protein LP0

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G40010	Ribosomal protein L10 family protein
Medicago sativa L.	MsG0380017516.01.T01	_
Oryza sativa L.	LOC_Os08g03640.1	60S acidic ribosomal protein P0, putative, expressed
Cucumis sativus L.	Csa019686	_
Glycyrrhiza uralensis Fisch.	Glyur000023s00004933.1	_
Codonopsis lanceolata	Cl_chr03_50380T	_
Arachis hypogaea L.	AH07G08830.1	60S acidic ribosomal protein P0 like

Expression pattern