Gene detail

Detail information of Am04G023490.1 Annotation

Gene ID	Annotation
Am04G023490.1	high mobility group A

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G023490.1	mRNA	Chr04	153705477	153706773	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM04G023490.1
ATCATGTTTCTTACGTGTGTTTTTTCTCTAGTGAAAAAATATGTGAGAAAGATTGAAACAAATATATGAGAGAGAGTGATAAGTAATATTTCATGTAGAGATTAAAAAACAAAATTGTGGTAAAGTTTCAAATTTTTCCAATTGTAATATTTCTCGTAGACACTAAATAAAACTTATTGATAGAGAAAAATTGAATATTAAAAATGAAGGGGACATGTAGATGAAATTAAAGTAGATATGTTATGAAAAATAGAAAAATCAGATACAGTTAGAGGAAGAAAGAGAATGAGAGAGTGAAAAATGTGTGAAAAAGAGTGAAAAAGTTTGAAAAAGTATATGAGAGAGAGTAAAAAAGTGAAAAAGTTTGAAAAAATTGTGACAGAGAGTGAAAATGTTTGAAAAAGTATTGAGAGAGATTGAAAAAGTTTGAAAAAGTGAAATTACATAAATATCCTAAAATTGTTTAGTTGGAAAAATGGTAAGATTGATATTTTGGTAGTAGGTTAATTGTATAGATAGATAGTAAATAAATAAAAAGTTTCAAATAGTAATTGAGTTAGTCCGAACATTACCCCGTGAACATCTACCGGCAATATGTAATATTTCCCGTAGAGATTAGAAAATAAAATTGTATTAAAGTTTCAAATTTTCCAAATTGTAATATTTCCCGTAGAGACTAAATAAAACTTATTGATAGAGAAAAATGGACTATTAAAAATGAAGGAGACATGTAGATGAAATTAAAGTAGATATATTGTGAAAAATAGAAAAATGAGATAGAGTTAGAGGAAGAAAGAGGAGGAGAGAGTGAAAAATTATGAAAGAAAGATTGAAAAAATTTGAAAAAATATACGAGAGAGAGTGATAAGTATTATTTCATGTAGAGATTTGAAAACAAAATTGTAGTAAAGTTTCAAATTTTCCAAATTGTAATATTCCCATAGAGACTAAATAAAACTTATTGATAGAGAAAAATGGAATATTAAAAGTGAAGGAGAGATGTGATGGAATTAAAGTATATATATATATATATATATATTGTGAAAAATAGAAAAATGAGATAGAGTTAAAGGAAGAAAGAGAAGGAGAGAGTGAAAAAATGTGTGAGAAAGATTGAAAAAGTTTGAAAAAAATATATGAGAGAGAGTGATGAGTGATATTTCTTGTAGAGATTAGAAAACAAATTTGTAGTAATGTTTCAAAATTTTACAAATTGTAATATTTCTCGTAGAGACTAAATAAAACTTATTGACAATGAAAAAATAGAATATTAAAAAAATGAAGAAGACATGTAGATGAAATTAAAGTGATATATTGTGAAAAATAGAAGAACGAGGTAGAGTTAGAGGAAGAAAGTGAAAAAGTTTGAAAAAAGTGTGAGAAGAGGGAGTGAAAAGGTTTGAAAAAGTGAAAAAATTTGCAAAAATCAAAAAAATGAAATTACATAAATATCCTAAAATTGTTTAGTTGGGAAAATGGCAAGATTGGTATTTTGGTAGTAGGTTAATGGTATAGATAGATAGTAGAAATCTCATTTACTTTTAGTCCCCGCATTTTCATTTGTCAACAATACTTTTACTCTCTCATGACATTTGATAGCGTTTAGAAGCGCCATAAAAGGCCCCAAAAAGCGCTATTAAAAGTCATGTGGAACTAAAAATTTTGAGAGAGAAAAATGCAAAAACTTTTTTTTGGTTCGGATCATTACTGACTCACGGAGTGTCCCAATATTTTCAACAAAAAACTAATCTATGCTCATGTTTAGAAGCAAATTTCGCACTGACCAACACCTAGTTTGTTCATTACAAGAATCAAACTCGGGAAGCACCGGACCGATCCCCGTATACCATAGATTGAATCTAGTGAATTTTATATAGAGACTAAAATTAAAATTAACAAATTTATAGAGATCAAAAACATATTTATCTTCTTTTTTAAATTCATTTTAATATGGCATTCAAACCAAAAAAAAAGGAACTCACACTGAATGCAATATTTTATCTAGAAAAACTCACACTGAAATCTTTGCTTATCTAAAAAAACACTGAATGCAATATTTTATCTAGAATACTATTAATTCCGTTCATTTTTATTTGTTTTTGAACATTGTTTTACATAAAAACCTGCAAATTCTTCCAATAAAATTATAAATTATCTTCAAATAATATCCTTATACAAAAAATAATATCTTTATTTATTTGTTACCAATCACATTGCTAATCAATTTTTTTTTACCAAGCACACTTATTTCATTTTGTATGATAATTAATTAAAGGATAATTGCAAAATAAATAACTAATGTAATAGAAATTAATGTAGCTTGTAATAGCTTGTAATATAAAATAAATAAATAAACATTTTTTTTAAAAAACTGACTAATAAAAATGAAATGATAGTGTACATTTTTTTTTGAACCATAGTGTAAATATATATATATATATATATATATATATAAATAATTTTAAACAAAAACAATAAGTACAATTTCAGCTTTCAATTAATGCTCCTAAAAAAATCGTAACTGAAAAAAAAGTCTGAAATTAAATTGGTTTTTTTTTTGACAATTAAATTAAATTGGGTTGAGACAGTCTACATCAGAAAACCTCATCCAATACAACAGGCATGCAAAAGACAAGGGGTTACCTTCAAATATTTCTGTGAACAAGCACACTTTAGCCACGTCATCGATCCATGTAGTGTGCTAAATAATAAAACATCGACCGTAGGATCATCATCCTTTTATTGATTCCCAACCGTCCATATTGTGTTAAAGATGAACAACAAGATATTGGATGGGAAAAAGAGGCAGTAAGGGTTTCTTTATTTATATTTAATAATAATTTATTTCCAATCTTTAATTAATTTATTTTCCTTTAAATTCAATCCTCAGTTCATAGCAATTGTCACCCACATCAAACACAAACTCTACTTCCTTGTTAATTTTTCAACTTTCACCTGTTAAATTCTGTTCAAGTTTTGAAGCTTTCTTCACCAGCTGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00538.22	Linker_histone	13	73	2.20E-08

Gene family

Gene family	Subfamily
Epigenetic Regulators	HMGA3

Gene Ontology

GO term	Description	Category
GO:0060255	regulation of macromolecule metabolic process	Biological Process
GO:0005840	ribosome	Cellular Component
GO:0031326	regulation of cellular biosynthetic process	Biological Process
GO:0030261	chromosome condensation	Biological Process
GO:0009892	negative regulation of metabolic process	Biological Process

InterPro

InterPro term	Description
IPR036388	Winged helix-like DNA-binding domain superfamily
IPR036390	Winged helix DNA-binding domain superfamily
IPR005818	Linker histone H1/H5, domain H15
IPR000116	High mobility group protein HMGA
IPR017956	AT hook, DNA-binding motif

trEMBL

trEMBL term	Description
A0A2K3KY43	_

SwissProt

SwissProt term	Description
HMGYA_SOYBN	HMG-Y-related protein A

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G14900	high mobility group A
Medicago sativa L.	MsG0580028927.01.T01	_
Oryza sativa L.	LOC_Os08g33190.1	linker histone H1 and H5 family protein, expressed
Cucumis sativus L.	Csa015254	_
Glycyrrhiza uralensis Fisch.	Glyur000147s00013828.1	_
Codonopsis lanceolata	Cl_chr01_39080T	_
Arachis hypogaea L.	AH13G41830.1	HMG-Y-related protein A like

Expression pattern