Gene detail

Detail information of Am04G023260.1 Annotation

Gene ID	Annotation
Am04G023260.1	NAD(P)-binding Rossmann-fold superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G023260.1	mRNA	Chr04	152482877	152489775	+

Sequences

CDS:

>Am04G023260.1
ATGGAGAGATGTAAATGTTTGGCTTTGGTCGGAGGGGGTGCTGTTTTGGGCTCTCTCTCCACCTTCTATCTTCTCAAGCTTCTTCAAACTCAAAAAAGAGGTGTGCGGCGGCAATGCACTGAGAATGCTACTGCTGAATTTAATGGTGTTGAAGGATGCACTATTTCTGGAAAGAAGAGTGATAAGGTGGTCACTGAAGATATTCTGAATGATGAGATTGTTTCAGAACAGCTGACTAGGAACATTCAATTTTTTGGCTTTGAATCTCAACAGAAAGTGACTGCATCATATGTCGTGGTCATTGGTCTTGGAGGGGTTGGCAGTCATGCTGCTTCTATGCTCTTGAGGGCAGGGATTGGCAAGCTTCTTCTTGTGGACTTTGATCAGGTTTCTCTTTCATCACTAAATCGACACGCTGTTGCGACAAGAGCAGATGTTGGCATCTCAAAAGCTCAGTGCCTCAAGGAGCATTTCTTATCTATCTTTCCGGAATGCCAAATAGATGCAAAAGTTCTGTTGTATGATTCATCTACTGAAGAAGAAATCCTCTCAGGCCATCCCAACTTTGTTCTGGACTGTATTGATAACATTGATACGAAGGTGGCACTTCTTGCTGCATGTGTACGTAGGGGCTTGAAGGTTCTATCTGCCACTGGGGCTGGCGCTAGAGCTGATCCAACGAGAATACGCATTGCTGATCTAAGAGAGTCAACTAATGATCCATTATCTCGATCTGTAAGACACCGTTTGAGGAAAGACTATGGCATTGATGGTGGCATCCCTGTTGTATTTTCTTTAGAAAAACCCAAAGTGAAGCTGCTTCCATTTAAGGCTCCAAATGGAGAAGAGGAAAATCCTTCAGATTACCAGATAGTTCCAGGTTTTAGAGTCCGTATCATACCTGTTCTAGGCACCATCCCTGCAATATTTGGACAAATCATGGCCTCCTATGTTTTGACTGACTTAGCAGGATTCCATGTTCAAACAGAACCTGTAGTCAACTTCGACATGGATCATTACCATATTCTTCATCAACGCCTTATTGAGCATGAGGAGTCATTGTACGGAACTTCCATGCAAGTGCAGGTAGATGTTGAAGAAGTGATGTATATTGTTAAAGAATTATGGCATGGGAGAAGTGCTAGAGAACAGCGAGCAAAAGATGTTGGACGAGGAATGTGGCGATCAATCAACGAGTTAATGCTTGTAAGGTGGGACCAGACGAAACCGGCATCTATTTCAAATTTGATTCTTTTGAAATTCAAAGAGGTGGATGAGCACGAGTCCCAGACATTGGATGATATAAAGGAAAAGGAACCAGAATTTTACGGTAGAGTTACTGCTGTGTTAAAACGAGCTGAACTCGATTTTGGTTTGTGA

Protein:

Promoter(3k):

>AM04G023260.1
ATTCCACCAGCTATTTCTTAGGAAGAATAAATGTCACTTTGCTACTTCTAGAGTGGAATACCTCGGCCATTTCATCTCTCATGGACAAGTCTTTACTGATCCTTCAAAAATACAAGCAGTGAGAGATTGGCCTGTTCCTTCTAACCTCAAGCAGCTGAGGGGTTTTCTTGGCTTATCAGGCTACTACAGAAGGTTCGTTCGTGATTATGGCAAGATTGCTCGCCCTCTTACAGACTTATTGAAGAAGGACAATTTTGTTTGGAGTGAGGAAGCTACTGTCTCCTTCAACAAGCTGAAAGAAGCACTGATATCCTCCCCGGTTCTTGCTTTGCCTGATTTTTCCAAAACTTTTGTTGTTGAAACCGATGCCTCAGGCAAAGGTATTGGTGCTGTACTTATGCAAGATCACCACCCTATAGCTTATATAAGCAAATCACTCGGGTTGAGGCAACAAGCTATGTCTGTATACGAAAGAGAACTATTGGCAATTGTATATGCAGTACAAAAATGGGGCGCTTACTTATCTCACAAGCCATTTATTATTAAGTCTGATCAAAAGAGTATCAAATTCCTCTTGGATCAGAAACTCAATACTCCTTTCCAACAGGTGTGGATGGCTAAGTTAATGGGCTTTGATTTTGAATTACAATACAAGACCGGTTCTTCTAATATGGCGGCTGATGCTCTATCTCGTCAACAGGGCGCTGAGTTACTGCCAATGCTCCTTAACAATGCTCTTGTCACTTATCAAAGCTTCTTGGTTGTCTGACTCTTCCTTGCAGACTATTATCAATGACTTGCAGTGCGATCCTAAGTCTCATCCTAAGTTTTTATGGCACCGTGATGAGCTTAGAAGGCGTTGAAAACTTCTGGTGGGCAATGATTCTGATCTGAAAGTCATTATCCTGAAATGGTTACATGATTCATTTGTTGGAGGTCATTCTGGTCGTGATGTTACTGCTGCAAGAGTGAAATCTCTGTTTTATTGGAAAGGCATGAACAAGGAAATTCAAAACTACATCCGTTGCTGTGATATCTGCCAGAAAAATAAACCAGAACTTGTCAAATCTCCTGGTTTGTTGCAGCCCCTCCCCATTCCACATCGAATTTGGGATGAAATTAGCTTGGATTTCATCGAGGGTCTTCCTTCTTCACATGGAAAGCAAGTTATATTGGTGGTGGTTGACCGTTTGAGTAAGTATGCTCATTTCTTATCCATTTCCCACCCCTACACAGCTCTTGATGTTGCACACTTGTTCCTTGGTCATATTTTCAAGTTGCATGGTATGCCAAGCAAAATGGTGAGTGATAGGGATCCAATTTTTCTTAGTTCTCTTTGGAATGAGCTCTTTAAGTTGCAAGGTGTTCTTTTGAACAAATCCACAGCTTACCATCCATAGAGTGATGGCCAAATCGAGGTGGTTAACAAGTCACTCGAGACCTACCTTCGGTGTATGTGTACTGATAAACCAACTACTTGGTCTAAATGGTTGCCTCTTGCTGAATGGTGCTATAACACACACTTCCACTCTTCCATTCAAACCACCCCATATGAGGTTGTGTATGGTCAAAGCCCTCCTATTCACTTACCATACCTTCCGGGTGAGTCTTCTAATCCTGAAGTTGACAGAACACTCCTTGCCCGTGAGTCAGTGATCAAGCTTTTACAATTTCACCTCCTTCGTGCTCAGAATCGTATGTCACAGCAGGCTAACAAACATAGGTCTGGGAGACAATTCTCTATTGGAGACTCAATATTTTTGAAGCTGCAGCCCTATCGTCAATCAACTACTAGGCAACAAGCTGTTAATAAGCTCAATCCTAAGTTCTATGGTCCCTTTAAAATCATTGATAGGATTGGTGTTGTTGCTTACAAGCTAGAATTACCACCTACTGTCGATATTCATGATGTTTTTCATGTTTCCCAACTCAAGAGGTGTTTGGATCCATCTACTGTTGTATTTAACCCTCTGCCAGTTAATGTTTCTGCTGGTAAGGTTCCTCTAGCTATCTTAGATCGTAAAATGGTAAAGAGAGGAAATGTTGCTGCTACTAAGGTCCTTGTTCAGTGGCTTGGTGAACCGAAGGAGGATGCCACTTGGGAGTTCTACTATGATCTTCAACAAAAGTTCCCAGATTTTAATCCTTGAGGTCAAGAATTGTTTTAAGGGGAGGGTATTGTGATGGTTTATCAGTACTTAGTTTATTTCTATTTGATATAGCAGCAGTACTTAGCTGATATAGCAGACATAGCTCATTTACTCTGCATTTTACTGTTACATTTGATTTTACCTTGTAAGTGTGCCTTGCACATGACTATTTGTAACAGAGTACTCACACATATATTATGAATGAAAAAGTTATGTGATCGTCATTATTGAGATCACAACCAATTTGATTTTCTCTCTCTCTCACCTCACTCTCCTCGTGTGTTTTCTGCTAGCAAATCCGAGTAGTGTTCAATCCTTCACTATTCCATTACTAACAGCTGGGTTTTACCGGATTTATTTCCTAGAATCCCTTTTCCTGTTACAGTTAACTTCCTATTTAGGTTTAAATTTATATTTATATATATATATATATATATTCAAAAGAAAATAAAAATACATTACTAACAGCTGGGTTTTACCGAATTTATTCCCTAGAATCCCTTTTCCTGTTACAGTTAACTTCCTATTTAGGTTTAAATTTATATTTATATATATATATATATATATATATATATATATATATATTCAAAAGAAAATAAAAATACAAGATAAAATAAAAAATAGAGCACTATGGGGGTGCATGTTAGAAAAAAAGGGTGTTAATAATTATTCTCAACTCACATATTTTTATATACCCGGTTCAATCGAATTAAGCAGAGTCCTACGCCGGTCGCCGTCGCAGCCGAGACCATTATTACACACAAAATCACAAACCACCGAACCAGACAACCTCCGATCAGCCAAGAAAGGTAAGAGAAAAATAAAAACCTTAAAAACAGTGTTTGGAGAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00899.24	ThiF	79	341	9.50E-42

Gene family

Gene family	Subfamily
Ubiquitin Family	ThiF

Gene Ontology

GO term	Description	Category
GO:0061504	cyclic threonylcarbamoyladenosine biosynthetic process	Biological Process
GO:0009536	plastid	Cellular Component
GO:0061503	tRNA threonylcarbamoyladenosine dehydratase	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0061605	molybdopterin-synthase adenylyltransferase activity	Molecular Function

InterPro

InterPro term	Description
IPR035985	Ubiquitin-activating enzyme
IPR000594	THIF-type NAD/FAD binding fold
IPR045886	ThiF/MoeB/HesA family

trEMBL

trEMBL term	Description
A0A1S2XKR7	_

SwissProt

SwissProt term	Description
TCD_SCHPO	tRNA threonylcarbamoyladenosine dehydratase

KEGG

KO	Description	Enzyme
K22132	tRNA threonylcarbamoyladenosine dehydratase

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G37530	NAD(P)-binding Rossmann-fold superfamily protein
Medicago sativa L.	MsG0580028914.01.T01	_
Oryza sativa L.	LOC_Os06g14040.1	ThiF family domain containing protein, putative, expressed
Cucumis sativus L.	Csa000270	_
Glycyrrhiza uralensis Fisch.	Glyur000147s00013858.1	_
Codonopsis lanceolata	Cl_chr01_38270T	_
Arachis hypogaea L.	AH17G10070.1	tRNA threonylcarbamoyladenosine dehydratase 2 like

Expression pattern