Gene detail

Detail information of Am04G022170.1 Annotation

Gene ID	Annotation
Am04G022170.1	cytokinin response factor 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G022170.1	mRNA	Chr04	145272783	145274732	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM04G022170.1
TCCATATTGTTATGCTATATTTAAAAATTACAATAAAATATTTAATTCAAATTCTTTTAAACATTGTCTTAGCTATCTTAAAAGAATTAAAAGAGCGTAATTTATATACTATATATATATGAGTAGATTTTTTCTTAAAGATTTATGTTAGCCATTTTTTATGTTAGTTAATTTTAACTTCGTTTTAAATTATGTTTTATCTTGTAAAAAACCGAACCAACCGAACCAATCAAAACCGCATTAGTTTGGTTTGGTTTGGTTCGGTTCGCGGTTTTGATTACAGAAACTGAACCAAACCAAACCAAACCGCAAGTAGCACTAAGACTTATTGACTTACAACCTTCCTTACTAACATACTAGCCCAAATGCAACTAAAACCCAACTCTCACTCACTTACTAGCTCAACTACAATTAATTCTTTGACTCACTTAGAAACAATCCATATTGTTATGCTATATTTAAAAATTACAATAAAATATTTAATTCAAATTCTTTTAAACATTGTCTTAGCTATCTTAAAAGAATTAAAAGAGCGTAATTTATATACTATATATATATGAGTAGATTTTTTCTTAAAGATTTATGTTAGCCATTTTTTATGTTAGTTAATTTTAACTTCGTTTTAAATTATGTTTTATCTTGTAAAAAACCGAACCAACCGAACCAATCAAAACCGCATTAGTTTGGTTTGGTTTGGTTCGGTTTTATTTTAGGAAGTCAACCGAACCAAACCAAACCGCATGTAGTTTTTCCTTGCGGTTCGGTTCAATTTTTATCTCAAAACCGAACCAAACCGCGAACACCCCTAATATAAACCACTACGCGCTCCAAATATGGTACACTTTCTCCACTCCTCTCATATGCTCCATTTTGATTATGGACTGACTGGGGCGTCGGAGTGCTTGCAGGTGGCGGCCTCCCCGCACTTCACATCGGAGCCGATACCATCTCGGACCTCGGCCATGTCATCTCGGATTTCGGATTTCCATCTCAACATCACCACCGTGAGGTACAATTTTCTTTCAGCGAGTTCCGTTCGGAACTAAAAGGGTAACTAACTAAACTAATATTCTTAATTCATGTGAAGTGGTTAAAAAAGACTTTCATTTTGGGACGGAAAGAGTAATTTTGTGTGTCATCCAATTTGAAACAACTCACTTATGAGTTACGACTAAATTGGTTTTGTTATTTTTATTTTTGGTATAGTTTGATTTGAATTTTATAACCAATTTTCTTAATTCTTGTCAAATGGCTAAAAGTAACTTATACATTGTAATTTTGTGTCATGCAATTCGAAACAGCTAACCCGTGACTGATGAATTGGTTTCATTTTAGAACCAATCAAAAACGAAAAAAGCGATTGGTTGGTTCTTGTACAGTACATCTGGTGAAAACATTACCATGAGCTAATGAGCATGAAGAAAAAACGGATTTACAACGGTAATTTGATGTTCTGTTCGGACATATTTCATTTGATTGGTGAAAACTAAGGTATCTACAGGCAGTGTCGTGAGGCCACGGCCCGCAAATCGACAAACGTTGCAGAAATTTGTACTGAAAAGATTGTGGTTACAGCTATACTCCTACTACTGTCTACTGGTACTACACTCCATCATGCAATTGATGAGTAACAGTGTCCGTCGTTCGTTATTGACATTTGAGTATTTGACACTTCGCCACTGCTCATTTCATTTCTTTTCTTATGCAATTTGTTTGTTTTTTTCATCCTCGGTTATTGGACCACGCTGGTAGTAAGTAAAAACTATAGAAGGCCACGCCAATTGTCCATTTTCAACGCTACGGATTCTACTTCTAGAGAATAGCGACGGTTCTTTTTCAGTGTTCACTTTACCATCGTCAATTACGTTTTGCTTGACCACCGTGTAAAGTTGCGACCAAACGATTCTTTGGACCAGCGAATCATTACTGAACTTAAAATATAGTAATAAATTCAATAATGATTAATTTTATATTTTATTTTTATTACGCTTTAATAAAAAATAAAAAATAGACCAATGATCATCAATAAGGAAGCACGCCTTTCTGAATAACTAGCTATTATGGATATTTTAATATTAAAAAAGTAAAAAGAAAATTAGGTTAGCTTTCAATGGAGATGATTAGTGTGGTTAAGTTTGTGGTGTAAAGGTGAAAGAAAGAGGGTAATTATGATTGGTGTGAATGAGATAAAATGGGAGTAGGAATTGGATGATGGACAGGTCAGCAAGGCTCAGCTAGCTGGCTAAAATTTCTCTACTCTCTCGAGTCTCGACAACGACACACACACACACACCCTGCATACATTACTCACCATTCATGACCCTCGGCTCCACTCACTCACACTCCATTTTCCCTCCCACCCTTTTCCCATTCTCTCTCTACCCAAAATCCCCACTCTCACGAGATAAATACTTTTATTTTGAATTCAGTTCATCCAATGGGGTCATTTCATGTATTATAAATCCCCACTCCCACCCCGTGTACTATAAATACCCTTTACTCTTCTTCCATTTACTCCGTTTTTCTCCAACATTCCTCTCCCTTCCCTCTCTCTTTCTCTCTCTAGTCAGTATTAGTATTAGCTCACTCTGCTTTCTCTCACTTCACGCTCATCTCGTTTCTGTGTAATCTTCAAGTAAAAGTGGAGTGAGAGAAGATCTTCACCGCATCCAAAGTTGGCCTTATTCTCTTTTTCCTCTTGCAAGAATATATCTCTTCTATCTACACCAAAAGCAAAAGTTCTTCTTTCTTTTTCCTTCCTTACCATATTTTGCTTTCTCAATTCTCAAGTATATTTCTTCTTCTCCACTAGATCCACTTTTTCCCCTCCCACCTTCAACTTCTAAGCATCTCCTTCTCCCACAACCTCAAAAACCTTACCTTAAACCCTCCTTCATGCACTCAAACACTCCACGACCTTCTATTTTCACATCCCTCACTTCATTCAAACAACCTTAGCACAAACAAAACCTTTTCTTCTTGTTCTTTCTCTCTTTCACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00847.23	AP2	120	169	3.40E-14

Gene family

Gene family	Subfamily
Transcription Factors Family	AP2

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0003677	DNA binding	Molecular Function
GO:0009873	ethylene-activated signaling pathway	Biological Process
GO:0006952	defense response	Biological Process

InterPro

InterPro term	Description
IPR016177	DNA-binding domain superfamily
IPR017392	AP2/ERF transcription factor ERF/PTI6
IPR036955	AP2/ERF domain superfamily
IPR001471	AP2/ERF domain

trEMBL

trEMBL term	Description
A0A1S2XM16	_

SwissProt

SwissProt term	Description
PTI6_SOLLC	Pathogenesis-related genes transcriptional activator PTI6

KEGG

KO	Description	Enzyme
K13434	pathogenesis-related genes transcriptional activator PTI6
K09286	EREBP-like factor

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G11140	cytokinin response factor 1
Medicago sativa L.	MsG0580028611.01.T01	_
Oryza sativa L.	LOC_Os01g12440.1	AP2 domain containing protein, expressed
Cucumis sativus L.	Csa019969	_
Glycyrrhiza uralensis Fisch.	Glyur000647s00023061.1	_
Codonopsis lanceolata	Cl_chr06_31500T	_
Arachis hypogaea L.	AH17G11520.1	Pathogenesis-related genes transcriptional activator PTI6 like

Expression pattern