Detail information of Am04G021560.1 Annotation
Gene IDAnnotation
Am04G021560.1 HEAT/U-box domain-containing protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am04G021560.1mRNAChr04137635800137658957-

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF13639.9zf-RING_2183418829.90E-08
Gene family
Gene familySubfamily
Ubiquitin FamilyRING

Gene Ontology
GO termDescriptionCategory
GO:0061630ubiquitin protein ligase activityMolecular Function
GO:0005829cytosolCellular Component
GO:0016020membraneCellular Component
GO:0008270zinc ion bindingMolecular Function
GO:0016567protein ubiquitinationBiological Process

InterPro
InterPro termDescription
IPR001841Zinc finger, RING-type
IPR011016Zinc finger, RING-CH-type
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR039804Listerin, zinc finger, RING-type
IPR039795E3 ubiquitin-protein ligase listerin
IPR016024Armadillo-type fold
IPR011989Armadillo-like helical

trEMBL
trEMBL termDescription
A0A1S2XLY0 _

SwissProt
SwissProt termDescription
LTN1_ARATHE3 ubiquitin-protein ligase listerin

KEGG
KODescriptionEnzyme
K22377E3 ubiquitin-protein ligase listerin[EC: 2.3.2.27]

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT5G58410 HEAT/U-box domain-containing protein
Medicago sativa L.MsG0580028562.01.T03 _
Oryza sativa L.LOC_Os01g74610.1zinc finger, C3HC4 type domain containing protein, expressed
Cucumis sativus L.Csa014482 _
Glycyrrhiza uralensis Fisch.Glyur000392s00023203.1 _
Codonopsis lanceolataCl_chr06_31090T _
Arachis hypogaea L.AH17G12510.1E3 ubiquitin-protein ligase listerin like

Expression pattern