Gene detail

Detail information of Am04G020540.1 Annotation

Gene ID	Annotation
Am04G020540.1	RING/U-box superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G020540.1	mRNA	Chr04	131139598	131141166	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM04G020540.1
CCGAACCAACCCGTAATAACCCGTAATAGTTTGGTTCGGAGAATGGATTTTAAGAATTGGATCCAATCCAAACCATGAACCCGTAGACATGTCTGTTTGGCTTCTAATATTCTACACCTCTTCAAGTTCAACGCTGCCTACTCAATTAACACAACCATAAAATCATTCCTTTCTTCATAGTCCAATATGCGTATTTCCCAGTCCAAATGCGTATTATCAATTTATGATCAATTTAAATCATTAAGCAAACAGAATGGTGATCAATTTAAATCATTATTAAATTTTAGGTATTTGAACTTTGGAAGGAGAACTTAGTAAATCTCAAAAAAAAAAAAAAGAGAACTTAGTAAAAATTTTAAAAGCACAAGATATGTGCTTAGACTTTTTATCTTTGTATCATGCATTTAAGTTGTAAGACACACTTTAGAATTTGGATTGAAGGTATTTTCTAAAATATGATTCAGTTTGGCTATGGTGCGTAACATCCCAAAATAATTAAATCAATTATTTTGATGCTTGAACCATTTAATTTATTTTTATGGTGCTTGATTGATAATTTTATTAATTGAGTGCTACATTAAATGTTGATTGATGTGGGGTTAGTTTAGAAATTTAAAAGAGAGTAAGGGTATGATGGTTTTTTTACACCACGACACCCTCACCCTCATTTTATTTGATTATTAAAAGAAAAGAAAAGAATTAAAAGAGAGAAAGAAAGAGAGAAGTCGAGAGAATAGGAAAGCAAAGAGAAAGGAAAGAAGAAGGAGAAGAGAAGGAGAAGAGAAGAAGAGAGAGTGGAACCCAACCCAAACCTAGCCCAAAATCACCACTTCTTCCCTCTTTAATTTCGTTTTCATCATCACCTAAGATCCTTGAACTTCAAAAATACCCATTTTTCCTCTATCCTTTCATTTCAAAGTTTTAGGGTTTATGTGAGATAGTGAGATGATTTGAAGTTGTCAAGAGTTGTGTGTTGGATTGAAGTGTTCCTAGAGGTTAAACATCAACTATACGGTAGATTGATGACGGATCGAAGCTTGATTTCGAGTTTGAGAGATTGTTGGTGTCTTGGGTTCAAATTTGGGATTTTGGTAGATTTTCAACTTTTGCTTCCTTGGTGTTGATTTCGACATAGTAGATGAAAATTCATCAAGTTAGTGTGTTTAACATCTTAATTTAGAAATATTACTCTGATGTATACTTTTATGTGCGTTCTGATATTTCATTAAAAATGAAATACATGGGGTGTTACATGGTGCCTATTATAACAAAAAATTAGAATTTTATGTTTTAAGTATTTGGTGTGAACACATGACCCGTGAGCCCAATCCGAACCAATCCATTCTTCATCGGGTTGGTTTGGTTTGGATTTTATAGAAAAAATCTCAAAATCCAAACCAACCCAAACCGATTAAATATGATTGGTTCGAATAACGGATTTAGTCAAAACCCACCCAAACCACAACCCGTGAACACCCCCTATTTGTATTTAATGCTAAAAAAAATGAGAGAAAAGATTCATTTAATTAAAGATAAATAAAGAATTTAATTAAAATAATAAAAGTAAAAATAGAAGAAAAGCGAAACGTTATAAGCTATAAGCTCAAACGTTACTTTAAGTAACGATTCAAAAAATGTTATAAATTAATGAAAAAACGATAGACACCTATAATGAACTTATCCGACATAACTATCCACTAAGCTAGCCATTTGGCATTACCCAATAATTTGAAAAAGGCTTAAATATCATTTATCCCCATGCAAATATCACGTTTATCCATTTACCCCCTGCAAAAAAAAAACTTTTAAAACAAACCCTGCAAAATGTAATTGTATCCAGTTGCCCCCTGCTGTTAGTTTTGGCTAACAACGTTAAGTCTAGGCTGACTTGGCTGACATTTGGGATCTAGTTAACCCCTGCAAATATTAAGTGTTTCTAGTTACCCCTGCAAATATTAAGTGGGGGGTAGTTACCCCTTGCAAATATTAAGTGTTTCTAGTTACCCCTGCAAATATTAATGCTGTTAGCCAAAACTAACAGCAAGGGGTAACTGGATACAGTTACATTTTGCAGGGTTTGTTTTAAAAGTTTTTTTTTCAGGGGTAAATAGATAAACGTGATATTTGCAAAGGGTAAATGATGTTTAAGCCTTTGAAAAACTACCAAAGGCTTTCTCAAATTTGGTAACCATGGTTAGATAGTGTCGAACCATGGTTAGGGGATCGGGGGTTATGCCAAATGCCAATAATGAAAGGGTAGAAGAAATTTCTGATTTTCCATCATTCCAGAACCGTAATCCACGAACCCCTCTTTGTAAGTCTCGTCAAAGTTTTTTTTTTCTTCTAGGTTTTGAGTTTTCTTCTTTAGGTCATCTAATCCATGTTTCCGTTGAAAAATGCTAGATCGTGAATTAGGATAGTCTTGTTGTGACATGTGAAGTTTCGATTTTTCTTGCTCTTATGTTCTTTAGGTATATTTTAATCGAGATTATTATCCATAAAGCTCTGATTTTTGTTTGATCTCGTTAATGAAGAAGTCACTCAAAGGCTTCTAGTTAATCTCGTTTCCTCAATTTTTAATCTTGAAATTTGGGCATCAAATTGCATGCTACTTGGGATTTTTACTTGTTTGTTCGTATATTGGTTTCAATTTTTTTTTCTAATTCTGGATTTTGGGGTTGCTTGCTTTAACCCAATTTTCCTTAGTATTTGTTCTTCATTTCTTTGTTTTTTGCAGATTGTTTTGGTATTCACTTTCAGTTTTTTACCTTGTATGAATAACATGTGAAACTAACAGCTATAATCAGGATTTAAGTAGACTTTGGCCATATAATTCACTCATTAGTTTTGTGTTAGTGTTCTAATATCTTTCCTTTAATGTGTTTACAGGTCAGATACTAAGAATAAACTAACCGTTTCTTCCTCCCGGATGATCAAGTTGACATAGCTATTCCATGTTTGTGGATTCTGCTTGATTCAGAGACACTTAGCTTGGTCAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13639.9	zf-RING_2	95	138	4.30E-11
PF17123.8	zf-RING_11	95	123	6.40E-09
PF14634.9	zf-RING_5	96	139	3.40E-07
PF00097.28	zf-C3HC4	96	137	3.70E-07
PF13923.9	zf-C3HC4_2	96	137	4.30E-07

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0032787	monocarboxylic acid metabolic process	Biological Process
GO:0016114	terpenoid biosynthetic process	Biological Process
GO:0046165	alcohol biosynthetic process	Biological Process
GO:0016567	protein ubiquitination	Biological Process
GO:0046394	carboxylic acid biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like

trEMBL

trEMBL term	Description
A0AAN9RYM0	_

SwissProt

SwissProt term	Description
XERIC_ARATH	Probable E3 ubiquitin-protein ligase XERICO

KEGG

KO	Description	Enzyme
K16285	RING/U-box domain-containing protein	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G04240	RING/U-box superfamily protein
Medicago sativa L.	MsG0380016052.01.T01	_
Oryza sativa L.	LOC_Os08g38460.1	zinc finger, C3HC4 type domain containing protein, expressed
Cucumis sativus L.	Csa007771	_
Glycyrrhiza uralensis Fisch.	Glyur005019s00043466.1	_
Codonopsis lanceolata	Cl_chr03_51520T	_
Arachis hypogaea L.	AH07G14910.1	Probable E3 ubiquitin-protein ligase XERICO like

Expression pattern