Gene detail

Detail information of Am04G020360.1 Annotation

Gene ID	Annotation
Am04G020360.1	Mitochondrial transcription termination factor family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G020360.1	mRNA	Chr04	130062003	130064283	-

Sequences

CDS:

>Am04G020360.1
ATGAAAGTTATGACCTTTGCCGGCGGCATAACAAAACCCACTTTTCTAATTTCCCAAACAGAAATGCCAATTCTAACATTTGGTCATTCAAAGTTGACTGCTACCCTAGCTTTTCAATTGCCATGTAATTGTGTTAGGAGGATGAGGTTGATTACAAAGCTTCAGTGTTCTATTGCTGATAGGACATTGACTTCTAGGTCCGGTGATTCGTGGTCATTCAAACGGGATTCCAGTCCAATTCGCAGGAAGCAGGAAGGCCCCTCATCATTATATACTGGTTACATTCGTCCTAGTTTATCTGAAATGAAGAAAGATAAAGCGACAATGCGCGAAAAGGTTTATGAATTCTTGCGGGGAATCGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTGTCAGTTGATGTTATGAGGGAGCGTGTCGATTTTCTTCATAGTTTAGGGCTTACGATTGAAGACATCAACAACTATCCTCTTGTTCTAGGTTGCAGTGTTAAGAAGAACATGGTTCCTGTGCTTGATTACCTTGGTAATTTGGGAGTGAGGAAATCAACAATAACACAGTTATTGCAGAGATACCCTCAAGTACTCCATGCTAGTGTGGTTGTGGATCTTATGCCAGTTGCGAAGTATCTTCAAGGGATGGATATCAAGCCGAAAGATATTCCTCGTGTTCTTGAGAGGTATCCTGAAGTGATGGGATTCAAACTCGAGGGAACCATGAGCACATCGGTTGCTTATTTGATCGGAATCGGTGTGGGAAAAAGAGAAATCGGAAGCGTCTTAACTAGATACCCAGAGATTTTAGGGATGCGGGTTGGTAGAATCATCAAGCCTTTTGTGGAATATCTAGAAAGCTTGGGTATTCCAAGGCTAGCCATTGCTACACTGATAGAGAAACAACCTTATATTCTTGGATTTGATCTTGATGAGAAGGTGAAGCCAAATGTCAAATCCCTTGAAGAGTTTAATGTTAGGCGAATGTCACTCGCCTCCGTAATTGCTCAGTATCCCGACATCATTGGAACTGACCTAGAAGCAAAGCTTTCCAATAAGAGAAGTGTTCTCAATTCTGTACTTCATTTGGCTCCTGAAGATTTTGGCTTAATTATTGAGAAAATGCCACAGGTTGTTAGCCTCAGCAATACACCTATGTTGAAGCATGTTGATTTTCTCAAGGATTGCGGGTTTTCATCGCAGCAAATGACGAAGATGATTGTTGGATGTCCTCAATTACTTGCTTTAAACATTGATATCATGAAACTTAACTTTGATTACTTCCAAAGGGAGATGGATAGGCCTTTGGAAGACTTGGCTACTTTCCCAGCATTCTTTACTTATAGCTTGGAGTCAACTATAAAACCTAGGCATGAGATGGTAGCCAAGAAAGGATTGAAGTGTTCTCTAGCATGGATGCTTAATTGTTCTAATGAGAAATTCGAGCAACGAATGGACTATGACACTATTGATATGGAAGAGATGGAAACAGAACCATCGTTTGACATGAATTCATTGATGCTACGAAGGAGTGATGAGTCAGATTCTGATTATGAAGACAGTGATTATGATGATGATGATGACGATGATGATGAGTAA

Protein:

Promoter(3k):

>AM04G020360.1
TTTCTTTCAATAGTGCGAGTAATTCCGTAAAGCTCTTATCCGTCCATCCGTGGCAAGTTTTCAAGTTATACAACTTTATCACAGCCAATAATTTTGTGAATTCAGTACAACCCGAATACAACGGTGTCTCTGCATCCGTTATCAACTTCTCAAACATTTGAGGACAATCATTAAGATCGTCTTCAACAGCCTTTGCCATCTCTTCAAATTCTTCCCCATCCAATGTAGGTCTTTCAGTGTCAACCGGCGCACATCTCTCGGTATTATTACCCATATTTGAAGATTCACCTCTTTCCTCACCATTCATTGTCCAACAAGTATAACTTTGATCAATTCCGTAACCCTTTAAATGTCTTGCCAACTCCTCTGCATTAACCGATTTTACATAACAACAACTTAAACAAGGACATTTGATATCACTAGAAGTCCCTAAACGTTTAACAGCACAGTTCACAAAATAATCCACTCCAGCGACATATTCCTTGGACAGACGATTGGCAGACATCCACTTTCTATCCATAATTTCCCAATATTTATAATAAAATCCTGATAAGATAACTTAAACCTATTACAGGTGAAAATCACACAACGTACAATTTTTTTGAAGCTAAGACATTCAACTATTTTCAGCTAAAAAAATCAAAGACTTTAATGTCTTCCATAATGTCATTCTTCATATAATAAATATAAGAAAACAACAAAAGTACCTGAACACGTGGAAGCAACAATGAACTCGAATGAACTAGAACGAACACTCGAACTAGAACACGAACTCGAACAATGAACACGAAGCTCTGGCAAACCAAACTCGCAAAACCTAAAAAACAATTCGCATTAAATTCGCATTAAACAACAAATCATCAACATCAATCCTAAATTTTTAAAATTTATAAATACAACACAAAAATCCTTAACCTAGAGCAACATTAAATTAACAAGCATTTCATTTGGATATTTCAACAAATACTACACCTACATTTCCCCTTAAGTTTAGAAATACTACACCTACACCTAATTTCAAAGAACCAATCAACAAGCAACAACATTGAATCGTCTAACCTAAGGTTCCAATGCCATTAAAATAACTAGAACATAATACAATGATATTACCTTTGGTGAAAGTGCAACATTAAATTAACAAGCATTTCATTTGGACATTTCAACAAATAGTACACCTACATTTTGCCTTAAGTTTAGAAACACTACACAAACACATTTTCAAAGAAACAATCAACAAGCTAGCATCAACATTGAATCATCTAACCTAAGGTTCTAATGCCATTAAAATAACTAGACCAAAATGCAATGATATTACCTTTGGTGAAAGTGGAACGAAAATGCAAGCTTCACCAAAACGTTGTACGGACCGAACAAAACCAACCCAACGAAAATGGAAACACGTCGTACGGACCGAACAAAACAATGGTGAGAATGAGAGGCGTAGTGGGCAACGAAAATGAGAGGGGGAAGAAAATGTGATGTAACGAAAATGAGAGTGAGAGTGAACGAAAATGAGTGAGTGTGAGTGAGAGAGAACGAAATGAGTGACAGTGAGAGTGAGTGAGGTGAGAACGTGAGAGTATCTGTGAGTGAGAGGACGCGTAGGAACAAAAATAAAATTAAAGCAATGGGCAGCGCTTTACCCTAAAAGCGCTGCTCATTAGGAAGCGTTTTATATCAATGGGCAGCGCTCTCCCATATAAGCGCTGCTTATAAGTCAGCGAATTTTACTAATGGGCAGCGCTCAGCCCCAAGCGCTGCTTATTACTCAGCGCCTTTGATCAATGGGCAGCGCTTCCCCCTAAAAGCGCTGCTTATCACTAAGCGAATTTCACTAATGGGCAGCGCTCACCCCCAAGCGCTGCTTATCACTAAGCGCATTTCTTCAATAGGCAGCGCTCCCGCTCAAAAGCGCTGCTTATCACTATCAATGAGCAGCGCTCCCCCCAAAGCGCTGCTTAAGTGTGCGACTAATTTTACGGATTATGGCGTAGTGTCGTACACATATCATTTACGTGTGTTACCACTTACCACAAGACTATATTTTTGAGAATTTTTTTTTGTCTATTTAGATAAATTGACAAATAAACACCACACACATATTTTAATTGGCCACACTCGGGTTCGAACCTCGGAGCCGACTTTCTCATATTCGAGACTTTTACTTTATCATCGAAAGTGCACATTTCATTTTAAATTAGTTAAATGTATATTTTTTTCTTAAAACTTTTGATCCATGGATTTAATAAAAATAAACTTTTTAATCTATAAACATATTTGTTTTTTGCGGATGCTTCTAGGGTGAGAGAGCAAATCAAATTTCTCACCGGTAAACTATTAAATATGACCGTAGGATGTAGTATAAAAATTTATCAATGGTTAAGATTTAATAATGGTTGATTCAATCTTAACCACTTCTAAAATTTTACCAAATATTTCATGATCAATTTTAGTGGTTCACGAGATTTGATTTACTTCTTCATCCTAGAAGCACCCGTTTTTTGCTTGTGAAAGAAAACATAAAAATTTATTCGAGACTCGGGGAATAAAAATTAAACGAAAAAAATTTCATAAAAATAAAACAACATTTATCCTCAAACGAAATAGACATAGATATTAGATTCTTCCCAACTCAAACAGCGTCGAAAAACCCTTTGCAGTTTTTGTTATCCCTTATCAGTGTTCAGGGAGAGCTCGGAGCGGAATTTCAACAGAGGCTCGTTACTGCCCCCTCACTGTGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATACTTGTTACCCAGAATTTTTAAATGGTTCAATGATTCTATCTGATATAATGAAATGTTGGGGTTCTCGCTTTTGAGTATTTACTTTCCTTAATTATTGAAAGTTTGTGACTTTTCTGCTGATTTCAATTATGTTCAACAATGGTTCAACCAAGTGTATGATACCCTCTTGTTTCTGCAGATTCAATGGTTACCCATAACTTGAAAAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02536.17	mTERF	175	483	6.20E-108

Gene family

Gene family	Subfamily
Transcription Factors Family	mTERF

Gene Ontology

GO term	Description	Category
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0003729	mRNA binding	Molecular Function
GO:0042794	plastid rRNA transcription	Biological Process
GO:0009793	embryo development ending in seed dormancy	Biological Process
GO:0008380	RNA splicing	Biological Process

InterPro

InterPro term	Description
IPR003690	Transcription termination factor, mitochondrial/chloroplastic
IPR038538	MTERF superfamily, mitochondrial/chloroplastic

trEMBL

trEMBL term	Description
A0A1S2Z7X1	_

SwissProt

SwissProt term	Description
MTEF4_ARATH	Transcription termination factor MTERF4, chloroplastic

KEGG

KO	Description	Enzyme
K15031	mitochondrial transcription termination factor family protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G02990	Mitochondrial transcription termination factor family protein
Medicago sativa L.	MsG0580028073.01.T01	_
Oryza sativa L.	LOC_Os05g33500.1	mTERF domain containing protein, expressed
Cucumis sativus L.	Csa012606	_
Glycyrrhiza uralensis Fisch.	Glyur001105s00029444.1	_
Codonopsis lanceolata	Cl_chr06_40910T	_
Arachis hypogaea L.	AH17G14840.1	Uncharacterized protein like

Expression pattern