Gene detail

Detail information of Am04G019930.1 Annotation

Gene ID	Annotation
Am04G019930.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G019930.1	mRNA	Chr04	126991715	127009066	-

Sequences

CDS:

>Am04G019930.1
ATGGGTAGGCGAAAAAGTAAACCTCATCGATCAGGTGGGATAGTTCTAGATGCAAATGCTACTGCTGAAACAGCATTGGATAAACAGAATGTTGTAGAAGCTGGGGGAGAAGCAAAGAATGATTTTGGTTACGTTGATAAACCTTATTTTGTTGAGGTTGACCGGTCCAATTGGATGTCAGGTGAACACCTTGATATTTCTGAAGTTGTTTTAAGGGATTTAAATTTGAGAGAAGGTTTTTCTGGTTTTGAATTGTCTGAGGATATTTATCAGGATCCCCAATACTCCTTAAGATTTCGGTTGTATAATGTCAGTAATGTTCTTGATCGAATTAAACTCGGCCATTGGCCAGTGTTACCTTATACGGATATTCATCTAGAGTTAGTAAAAAGTGCGACAGGTGACAATACCGAAACATGTACAGTGTTGTTATCTGGTATTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTGTTCACTTGGCAAGTTTGGAATTTGTTACATTGAGGTTAGTTGTTGGCGTTAGGCTTTCTGAGGACATTCCTTCCCTTAGGGTTAGGGTTGAGGTACTAAAGAGCGCCTTCGGTGCTTCTGAGTCGCTTCTTGGGAGTTCTAGACAACTATGGAAAAAGAGTATGATGAATGTCATGTCTTGGCTGCGTCCAGAAATAATGACCTCAGAAGTTAGGTATGGGTTTGGTAGCAATATGAAAATGGAAGTTGATCCACAGACAGAGACGGCAGACGAAAGTGGCAATGCCAGGAAGCATGTGAGGTTTGATCCTGCAGGTTTCTATGACGACATTATGCCTTCAAAAGCAGAGCCAATGCTCGAAGATGACATACCTGAGTTACTTCCTGAACTGAGACCATATCAACGGCGTGCAGCTTTCTGGATGGTAAAACGGGAAAAAGGAATGGAAGAAAGTCAGGGTGAAAGAGAAAGAAATCTGTTTCATTCTCCATTATGTGTGCCGGTGGATTTTCTTGACACAAGTTCTAAAATGTTTTTCAACCCATTCAGTGGAAATATTTCCTTGTGCCCGGAGACATCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGTTTGGGAAAAACTGTAGAATTGCTTGCTTGCATCTTTGCCCACCGGAGATCAGCATATGGAAGTGACTTACCAACTGATTCAGTGCCCCAAATTAATGGCAACCAAAAAGTCGCTTTAAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGCGAAAGTATCAAATATCAAGGGCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCAAAAGGAAAATCACTTAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACCATAGCTGTGAGGGATGGGGAACATGTATGTCAGATGTGCTCTGAACTAAAACAAGCCACTGAATCTCCTATTGCCTCTGGTGCCACTCTCATTGTGTGTCCAGCTCCTATTTTGCCCCAGTGGCAGGATGAAATTATACGTCATACACGTCCAGGATCTTTGAAAACTTGTGTTTATGAAGGGGTGCGAGACACAACTCTCTCCAATAGATCTCTGATGGATATCAATGATCTTGCCAGTTCTGACATTGTAATAACTACATATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTGATAGACATGTAGGTGATCGGCACCTTTTGAGATTTCAGAAAAGGTATCCAGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGGTATGTTTGGATGAGGCTCAAATGGTTGAGAGTACTGCTGCTGCAGCCACCGAAATGGCTCTGAGACTCCATTCCAAGCACCATTGGTGCATTACAGGGACCCCAATTCAGCGAAAGCTTGATGACTTGTATGGACTTCTAAGATTCATCAAAGCTAGTCCTTTGAATACATACAGATGGTGGAGTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATAAGGGAGCTGTAGAATTTACACACCGAATTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCCTCCCAAGAGGAGTGCCTCACTTGGCTTACACTATCAGCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAAAGTTTGAGAAACGATATTCTTAATAGAAAAGTCCCAGATTCCGTATCTTCGAATGGTTCATGTGATCCTTTAATCACTCACACGGAGGCAGGAAAGCTATTAAATGCTTTGCTGAAGCTTCGGCAGGCTTGTTGTCACCCCCAAGTTGGAAGTTCTGGGTTGCGTTCCCTGCAGCAGTCACCAATGACTATGGAGGAAATACTATCGGTCCTAATAAGCAAGACTAAGATAGAAGGTGAGGAAGCTCTCCGGAGGTTCGTTGTTGCTCTGAATGCACTTGCAGGAATAGCTATAATACAGAAAGATTTTTCTCAAGCTGCTTTGCTGTATAATGAAGCCCTTACTTTGGCAGAAGACCATTCTGAAGATTTCCGTGTGGATCCTTTGTTAAATATTCACATTCATCATAATCTTGCTGAAATACTCCCGCTGGCTGAAAACTTTTCTCTGAGCTTGCCATCCCAAGGAATGCAATTGTCTGGAACTTTTGTAGCTAAGACGACCAAAAAGCATTTTATTGTTAAGGATGATCATGGTCATGTGAAGAGGCATAAAATAAGTGGCCGCGATGACATAGATTCAACACTGGCTTCTGCAGAACCATCAAATGTTGCATCTATCCTTTCAGAAAATGACTTAAATGATAGAGAGTTTGATAATTTATCAGCCAGTTCTGTCAAATATCTGATAGCAAAATGTGAAGATTCAAAACAGAAATACTTATCTGTGTTCAGTTCAAAGCTATTTGCATCTCAACAAGAGTTTCAAAATTCTTACAAGCAGGTTTGTAATGCATATCGTGGCAGCAGAACAGATCAAAATACATTTTGGTGGTTAGAAGCACTTCATCATGCTGAACAGAACAAGGATTTCTCATCTGAGTTGATTAGAAAGATTGAAGAAGCCGTCTCAAGAAATTCAAACAATTCAAAATCATCAAAACTAGCTGCTCGTTTTCGGACCATAAGCTCTCTGAAGTATCAAATTCAAACAGGTTTGGATCAGTTAGAGGCTTCTAGGAAAGTTCTATTAGATCGACTGTTAGAAGTTGACCAGACAATGGAAAAACCAAATGATGAAGATATTGAGCGTGTGGGTAAATGCCGAAATTGTCAACCTAATTGTGATGGCCCCCCATGCGTTCTGTGTGAACTAGATGAATTGTTTCAGGACTATGAAGCAAGACTCTTCGTTCTCACGAACGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTTGATTTTCAGAAGAAAAATTTTGCACTGAATCATTTCCTTTCAAAGCTATCACAATCTGATCACAGTTCATCAGTATCTGATATTGGTTTATTAGAAGAATCCAAAAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCGGCATCAGAGCTTGAGCTTATTCTTGGAGTTTTAAAGAGCTATTGCAAGTCTAAGTTAGGAAGGAACTCTGTCTCAGCAGCCACCAAGCACTTGCATGTTTTTGAGGGAATGCGAAAGGAGTTTGCCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAATATCTGCGTGCCCATGATGAAATAAAGATGGCAGTTTCCCGTTTGCACTTAAGGGCAAATGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAATGAGTTGTTTGCGGCTAGCACAAACTTTTCCCATGATAAGTTTATGTCATTGACCATGTTGTCACAGATTAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAGCTGCCACCAGATAGTTCTTTGTTCACTCAAGAGACAACTCCAATGACAAACTCTACAGAAGAGAAGGATGCATTTGTATCTAAAACTGATGAGGAAACATGCCCAGTTTGCCAAGAAAAGCTAGGCAATCAGAGAATGGTCTTTCAATGCGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGTCTGAGCAAAGACTTCAACATAGCAAGACTCATAATTGGGTGATGTGCCCTACATGTCGACAGCATACTGATTTTGGAAACATTGCTTATGCTGTTGATGCGAAGAATGAATCTTGCGATTCTTCGATGCTGCATACAATGGATGGTTGTGATAAATGTGAAGCGTCCATTAGTGTTAAAGGCTCATATGGAACTAAGATTGAAGCAGTCACAAGAAGAATGTTGTGGATAAAGGCTACAGATCATGAAGCAAAAGTCCTTGTATTTTCAAGTTGGAATGATGTACTCGATGTATTGGAACACGCCTTTGCTGCCAACAACATCACCTACATCCGGATGAAGGGAGGCAGAAAAGCACACCTCGCCATCAGTCAATTTAGAAAAACAAAATCCATTCAGGTGTTATTGCTTTTAATCCAACATGGAGGCAATGGCCTCAATCTTTTAGAAGCAAAGCATGTGGTCCTTGTTGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTACATCGTATTGGACAAAGATATAAGACCCTCGTTCACCGTTTCATAGTAAAAGGCACAGTTGAAGAGAGCTTATATAAATTGAACAGAAGCAGGAGCAAACATTCATTCATTAGTGGCAACACAAAAAATCAAGATCAACCCGTTTTAACACTCAAAGATGTGGAGTCCTTACTAGCAAGAGCACCACTAACCATGCCAGAAAGTGATGAAAATCCTAATACAGATACCAACCTGAGACACTTGCCACCAGCAATGGCTGCAGCTATTGCTGCTGAGAGGAGACTTAATGAGCAAAGTACATGA

Protein:

>Am04G019930.1
MGRRKSKPHRSGGIVLDANATAETALDKQNVVEAGGEAKNDFGYVDKPYFVEVDRSNWMSGEHLDISEVVLRDLNLREGFSGFELSEDIYQDPQYSLRFRLYNVSNVLDRIKLGHWPVLPYTDIHLELVKSATGDNTETCTVLLSGIFDGPDEGVSGLVHLASLEFVTLRLVVGVRLSEDIPSLRVRVEVLKSAFGASESLLGSSRQLWKKSMMNVMSWLRPEIMTSEVRYGFGSNMKMEVDPQTETADESGNARKHVRFDPAGFYDDIMPSKAEPMLEDDIPELLPELRPYQRRAAFWMVKREKGMEESQGERERNLFHSPLCVPVDFLDTSSKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSAYGSDLPTDSVPQINGNQKVALKRLKRERVECICGAVSESIKYQGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCESKTYKTTIAVRDGEHVCQMCSELKQATESPIASGATLIVCPAPILPQWQDEIIRHTRPGSLKTCVYEGVRDTTLSNRSLMDINDLASSDIVITTYDVLKEDLSHDSDRHVGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESTAAAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFIKASPLNTYRWWSEVIRDPYEKGDKGAVEFTHRIFKQIMWRSSKEHVADELDLPSQEECLTWLTLSAVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPDSVSSNGSCDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILSVLISKTKIEGEEALRRFVVALNALAGIAIIQKDFSQAALLYNEALTLAEDHSEDFRVDPLLNIHIHHNLAEILPLAENFSLSLPSQGMQLSGTFVAKTTKKHFIVKDDHGHVKRHKISGRDDIDSTLASAEPSNVASILSENDLNDREFDNLSASSVKYLIAKCEDSKQKYLSVFSSKLFASQQEFQNSYKQVCNAYRGSRTDQNTFWWLEALHHAEQNKDFSSELIRKIEEAVSRNSNNSKSSKLAARFRTISSLKYQIQTGLDQLEASRKVLLDRLLEVDQTMEKPNDEDIERVGKCRNCQPNCDGPPCVLCELDELFQDYEARLFVLTNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSDHSSSVSDIGLLEESKKRNVGQRVVVSRSASELELILGVLKSYCKSKLGRNSVSAATKHLHVFEGMRKEFAHARSLALAQAQYLRAHDEIKMAVSRLHLRANEDDKSLDALGENELFAASTNFSHDKFMSLTMLSQIKGKLRYLKGLVQSKQKLPPDSSLFTQETTPMTNSTEEKDAFVSKTDEETCPVCQEKLGNQRMVFQCGHVTCCKCLFAMSEQRLQHSKTHNWVMCPTCRQHTDFGNIAYAVDAKNESCDSSMLHTMDGCDKCEASISVKGSYGTKIEAVTRRMLWIKATDHEAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKAHLAISQFRKTKSIQVLLLLIQHGGNGLNLLEAKHVVLVEPLLNPAAEAQAISRVHRIGQRYKTLVHRFIVKGTVEESLYKLNRSRSKHSFISGNTKNQDQPVLTLKDVESLLARAPLTMPESDENPNTDTNLRHLPPAMAAAIAAERRLNEQST*

Promoter(3k):

>AM04G019930.1
AGCTGGTTGGTATGAATTCAAGATAGAGCATAATCTACAGACGGGAGACCGTGTCAAGTTCAGTAGGAGAGGAAATGAAAATCAGTTCATTGTTGAGATAGTGTAAGATATTTGACTTTGTTGACCACTACACCTTTGTGTCAGGAACCAGAAGGCAGAATATTTTGTAATACCGTACATTTAGAGCTAACTTAGTATTAGTTCTTATGTCTGTTAGAAATTGTCGTGACTTCATTTCTGCCAAGTCTATCGGTTTTTAGTTTGTAACTTTACATTTTAACTTGAATGTTGTATGCTTTCAGTTACTAATTTTAGGAAGCCATTAAATTTGAAATATTGTGGGTAGTAAAGTTCACATGATGGTTATACAATCATGGATTAACATATTGTATGTACACACTGTGTGTGGTAAAACTAAGCATGTATCCTACTATAAGTATCACTGTGCTTCTTTAGTATCATGGCAAGCATAAATATACAATTTAGCAGGTATGTTGATATCATAAGATTTATATTTTTATATTGCATACCTATCACTTGCTAATGCAGTCTAATTTTTTTGAATACTGTTGTGCAATATTTACATGACGGCATGTGGGGGATTACTCTTAATCATAGCTGAACAGGTATACTTGGAACTATAATGATAGTCGTCCAGATCGACGTGCTTATATAAATTTGAGACAGGGCTGTTCAGATTAGACAAATGGATGACTTGGACATCACCTATTTTTAAGTTTAATGCGTGGCTTTTTTTATTAGTGACTTAGGATGCTTAGGTGGACGATTCATATATGTATATAATTAAGATAAAGATTAAGGTTAAGTTAAGATTCAATTTCGTGAAAGACAAAATAACAAATTTGGAGAATATTAATAAAAATATGGTAATTAATTAATCCGGTTAAAATTATCTAAGATTTGCTATAAATCAAAATAAAAGGAAATCATAAATTATTTGTAGAAAATCGTCATGATTCTCAAATATCGTTTCTTACACACTCAATTTAATCCAGATTTGCTATAAATCAAAATAAAATCCAGATATAGACATAGATTATGATGATTTTTATGTTAATTATTTATTTTTTTATAGTTAAAGTGCGGGTAGCGAGTGGGGGCACTTGGGTGCACCTAGAGGTTATGGGTTCAAACACTAAAGTTGCTGCCCACGCGTGTGTGGGCTATAGTGCCCTGCCCATGTTTGCCATCCTTATTTGCAACTCGGGGTGGGAATAGACTGGGTCGAGATGAGCATTAGAAGGCTTGAGTCTGGCCTATGTTAAAAATGTTAGGTCTGAGTCTGACCTGTGGTATGTTGTAGGGCCATGTTTGAGGCCGGATTTGGCCTTTTTGAAAGCCTAGGCCTACAAACCTATTTAAAAGCCTATCTCACTGATAGATCAATGAGATTAAGTTCTAATTTCAGATCTAACAAATCATTTTAAGAAAATATCTTTATACAATATCCTATTCAAATTTTATAATAATAACTTTAAATATGTCTAAAATTGATGCATGTCAATATATTTAAATTTACGAAAAGTGTAAGCAAATTTATAATTCAACACAAAATACAAAATTTAATATAATAAAAATATTTTTTATATTTAATTAAATAAGTCGATTTGGTAGGCCTAAAAGGTTTCTTCAATCCTCTGCAGTGTAGTCTTTTTAACTAAATAAGCTTTTAAAAAACCTAGTCTTATCTATTGAAAATAAGTCTAACCTAGATTGAGTTTATCCTAAACTAGGCCATAGACATCCATGAGTTCGCGTGACCTATTCCCACCCCTATTTGCAACATAAGAAGTGGACGATAAATAGTCATTTTCATCTCTTAGTGTGTTTTTTTTTTGATAAGCAATGTTAGTGGGTTGGGAGAATGTTAGTTTTCCGGAGTTGAACTCGGGACCTCCTTCTTGCACTCATTTGGTGCACTCCTTCGGTATCCCTTAGCTCGCCAACTGAGCTAATGTGTTGTTATTATAGACCCTAAATGTATCAAAATTACAAATAAATCCTTTTTTAGCAATTTTAGGGACTAAACTTACAAAAAAACATATTTGAGAACCAAAATGACTAACAAAAAATATCTGAAAATTAAAATGACTCATTAAAGAGACACTTGATGATAGACAGCTGACCAAAACAAATGACTGTTTACCCGAAGTGAGTGGTCAAAGAAGGAATATTTGTAAAATCAAATTCGAATCGAGGCCGTTGGATTTGTTGAAAACGGCTGTAGGTGATCCCAAACCAGAGTCCCCTGACGAACACAAACAGAGACAGTTCCACCATTCGTGTGCTCTTGTTTACTTCGGTGATTCTCTTTCTCTCTCCAGGTTCCAATTCCAAAACCCCCTTCTTCTTTTTTTCTCTCATGCACAAACTCACGTGCAATTCTCATTGGTATATTGTTTCGTGAAAGTGAATTGAAAAGTTAGGGACTTTCAGGATTAGACTGCGGCTATGGCGGTGTTGTCCCCATTCTGTGTTTTTTTGCCCCTACGCCTTTGTTCAATTATGTCAAAGTTCAATTAAAGCTTTGTTCTTTCTAACCCTTTGCTTCCTAATTGCATTTTCCAGCTTTTGAATGTTTCTGCATTCAATATGTATCTTTTTGAGCATTCAATGTGTATCTTTTGAGCTCGTCTTTAATTGCTGCTAGTTTGTTTTTTTGTTGTTGTTATATATCATTAATGATGCTTCCTCTGTTTAGGTGTTTATCTATGCAGCACCTACCCCGTAATCACTTCTATTTTCTCAAATTATTATTGATGTCCATGTGTTCGTGTCGATATTGTGTGTGTGTCGGTGTTTCATAGGTGTTTATTCTTTTTTGAGAACCTAGGTCTGAATGTTAAATCTTTTGAGGTCTCATGAGTCAATGTTGAGCATCAGTTTTAACTTTCAATTTTGTAATATCATAGGTAAAGTTTAGTAGATTATAAATATAGCTTAATTTTTTTTGTTTTGTTTTTCCAGTGGTGACAAGCG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00176.26	SNF2-rel_dom	292	784	3.20E-83
PF00271.34	Helicase_C	1453	1560	2.60E-07

Gene family

Gene family	Subfamily
Transcription Factors Family	SNF2
Epigenetic Regulators	CHR36

Gene Ontology

GO term	Description	Category
GO:0004386	helicase activity	Molecular Function
GO:0016746	acyltransferase activity	Molecular Function
GO:0016874	ligase activity	Molecular Function
GO:0140096	catalytic activity, acting on a protein	Molecular Function
GO:0016301	kinase activity	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR001965	Zinc finger, PHD-type
IPR011011	Zinc finger, FYVE/PHD-type
IPR038718	SNF2-like, N-terminal domain superfamily
IPR000330	SNF2, N-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain

trEMBL

trEMBL term	Description
A0A8B8JDE4	_

SwissProt

SwissProt term	Description
SHPRH_MOUSE	E3 ubiquitin-protein ligase SHPRH

KEGG

KO	Description	Enzyme
K15710	E3 ubiquitin-protein ligase SHPRH	[EC: 5.6.2.- 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G40770	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding
Medicago sativa L.	MsG0580028155.01.T01	_
Oryza sativa L.	LOC_Os08g08220.3	EDA16, putative, expressed
Cucumis sativus L.	Csa005676	_
Glycyrrhiza uralensis Fisch.	Glyur000826s00029641.1	_
Codonopsis lanceolata	Cl_chr03_45730T	_
Arachis hypogaea L.	AH07G21600.1	E3 ubiquitin-protein ligase SHPRH like

Expression pattern