Gene detail

Detail information of Am04G019160.1 Annotation

Gene ID	Annotation
Am04G019160.1	RING/U-box superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G019160.1	mRNA	Chr04	120614323	120615755	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM04G019160.1
GCTTCGGCCAAAGCGGTGCGGTGGCTTCGGCCAAAGCGGTGAGTGCCCTCCAGGCTAATAGCGGTGATGATGGATCCACATGCATGTTGCATTACATGCATTAGTCAAGCATTTGATGAGTTTATGGATGAATTATGAATATGATTATTGTTGTTGATAATGTGGTGAATTGATATGACTTAGTGTTGCTTGCTGCCTTCCTTACTATAACGCTTTTCTTAATCATTATTATTTGTGTAAAGAGACTCACCCTACTGCCTTTGTTGCTTCTTATGTCGGCAACTTGCAGGTAACCAAGAGTGAGGGCATCCTTATGCCTCTTTTCTAGTAGTGTGTCAGCTCTGATATGTAGCACCAGGGGGAGGGCGTAGTAGTACTGTTTTTTTTTTGTCGTTTTGATGTATTGGATCGTTATATCGATGTATTGATACCATTCCGCTGTGTTGTGGCGATTTGATTTATGTGCTGTAAACTAAAACAGGTGTTGTGGGCCCGTCCCCAAACTATTCGTGCTATATATCGTGCTGTTGATTTTGGACTTTACGTCATTGATTATAATTAGAAGATTTTTATAAGTGTTGAAAATGTGACACCTTCTTCAATGATTATATTCTTTTCGAAAAAACTCTGATCTATATATTAAATAATAGTTAACTTAGAAGGGGGTGTTACAGTAAGGGGTCTCGATAGGACTCACTAAGATAATGTTTATCTCACCCTTTAAAATTGTGGTTTTTACAGAGAAACAGGGAAAGGCAAAGGTGATGAAGCACGGCTAGGCGGTGTGCCTTATGGAGTTATTGAAGATTCAGTTTTATGATTATGTCATTTTCCCTTTGTTGTCTTTGTATTATCGATTGTATAACTATTACTAGCTAACAGTTGTAAATCGTTTCCGCTACTTATGTTTTGGGATATTGAACACCAGGTTGTAAAAGTTTATAAGTCATGAGACTTAAGTACTTTATGTTAAGTTAATGAAATTGAATGACTGTTTGGATGTCCATTCAAGAAAAGTTTTAGTTGTGTTCAATATTCTAAACAGGAGGTTAACTCTGTTGTATGCCATGCTGCGCATTTTAGAGTTTCTCGGTGTTAGAAATGCTGGGGTGTTACAGTCTCTCTCACACTCCCCGTTTTTCATCGTCGAAGGTCTCTACCCCGTCGTTCCTCCATGTCAATTTTATTGGCGGCCCACCCGGGTTTTTTGGTCAAGATCCACCACTGGATTCAAATGCATGTTTTTCAGGAACTAGCTATAATCTTTGTATTGAAAATATTCTTAATCAAGTTGTGTGTAGAATGACAAACCTAATAGTCCTATCTATAGGAATAGTGGACTACTAATATGTACAAAAACTATATAAGATAGGCTAAATAGCACTTTTGGTCCTTTATCTTTGCTCTAGGTTTCATTTTGGTCATTTATCTTTTTTTTGATCCGTTTTGGTCTCTCATCTTTGATTTTTGTTTCATTTTGCTCTAAGTTAACAGACGCCGAGCTGGTAGTTAACTGCTGACGTGGCGCCTTAAGTGTCATGTATGACGTGCCATTCATTAATTGAGGTGGCAAATAAATGCATTTTTTAATTTTAAATCAATTGACAGATAAGCATTTAAGTTTTTAAAATTTAAAAACACAAAACAGAAATTAACAAATAACTAAAAACACTAAAAACATTAATCTGAAATGTTTTTAAAAATTAAATTGGAAAAGTTCCTAAATCAAAACTAGGTTCTTCATCTTCTTCTGCAGCTCTAAACACCAAGATCACCAACAGCTCTAAATCAAAACTAAGTTCCTAATTCAAAACTAGGTTCTTCATATTCTTCATCTGCATCCTTTTCTTCATCATCTTCTTCATCTCTTCTTGTAATATCATAAACAACAAAAGCACCAACAACTCTAAAACGTTCTTGACCCAGATCTGAGAGTAAATTCGATTTCCCCACTACTGAATCGCCAATTAGCACGACCTTGTATAAGTACTCTACTCTTTTCCTGCTTGTTCTTCGTTTTTAGCACGATCTTGAATAAGCACGATCTGCTTGTTCTTCTCCCGCTCTTCGCGCAAAACCTAAGTGTGAGTGAGTTTTTGTTTTGTGTGGATGGAAGGAAGAACGTGAATCAAGATGAAGATTGAAGGGAAAGAAGATTACAGATCTGGGATATTGCTGGACAAGAACCCTAGTTTTGATTTAGGAATTTTTCAGATCTGGAAATGAAATTGATGGTTCGATAGACATTGTTGTTGTTGATGAAAGGGGATTTGATGAAGAAGAAGAGAATTATGATGGAATCGTTGTTTTTTTTACTGAATGTTGTTGCTGAATTTTAGTTTATGGAATTGTTGTTGAATGTTGAAGAAGAGTGTTTCTGGAATCTGATTGACGGCAGAGACCAAAATGAAACAAAAATGAAAGATGAGGGACCAAAACGGACCAAAAAAAGATAAAAGACCAAAATAAAACCTAGAGCAGATAAAAGATCAAAAGTGTTATTTATCCTATAAGATAATATGATAACCATATAATGACTTGATATTGTCATCATTTATAATGACTCTGTATATTTACAACATACTTTGTTGACATATTTGATTGAGGGAATATAATAATGAGAATACGATGTTAGGTTTTTTTTTTTGAACAACTATACGATGTTAGGTTTGTATTCCCTAACTTGAAAAAGATGAATAGAGACAAATTACCTAATAAGTAATAACTTGAACTATATATAGATTTTCTTCTAGACCTTAACTACCATAATTTCTTACTTGTTTAATAAACAAACCAACCAAAAATAAAAGGAGGTATAGGGGTTCTTTCAAAACTCATTGTCAATTACCAAACACAGGCACTAAACTTTAGAAAGAGACATCTAAACAAACAAAACTATTCCTTCTCTTCTAATTCAAAGAAAAAATACACCTCACACACACTTCTCAACAACAATCCAATTCTTCATTTCATTTCTCTTCAAACTTATCTCTAATTTCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13639.9	zf-RING_2	145	188	1.40E-13
PF17123.8	zf-RING_11	145	174	2.70E-12
PF13923.9	zf-C3HC4_2	145	187	5.40E-09
PF12678.10	zf-rbx1	147	188	3.30E-08
PF00097.28	zf-C3HC4	146	187	6.90E-07

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0016567	protein ubiquitination	Biological Process
GO:0016740	transferase activity	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0051536	iron-sulfur cluster binding	Molecular Function
GO:0046872	metal ion binding	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR044675	E3 ubiquitin-protein ligase RING1-like

trEMBL

trEMBL term	Description
A0AAN9Q7T2	_

SwissProt

SwissProt term	Description
ATL54_ARATH	RING-H2 finger protein ATL54

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G72220	RING/U-box superfamily protein
Medicago sativa L.	MsG0580027893.01.T01	_
Oryza sativa L.	LOC_Os02g46600.1	RING-H2 finger protein ATL5G, putative, expressed
Cucumis sativus L.	Csa003662	_
Glycyrrhiza uralensis Fisch.	Glyur002362s00039695.1	_
Codonopsis lanceolata	Cl_C16420_unscaffolded_00010T	_
Arachis hypogaea L.	AH17G17760.1	RING-H2 finger protein ATL54 like

Expression pattern