Gene detail

Detail information of Am04G013820.1 Annotation

Gene ID	Annotation
Am04G013820.1	myb domain protein 88

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G013820.1	mRNA	Chr04	49919890	49926509	-

Sequences

CDS:

>Am04G013820.1
ATGCAAGATATGAAGAAGCAGAAACAGAAGCAGATTGCAAATGAAGAATCTATGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAGGATGATATACTAAGAGAGCAGATTGGGATTCATGGAACTGATAATTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACAACAAGACAGTGCAGAAGAAGATGGTATACTTACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGCAATAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAACGCTGTGAAAAATCGTTTCTCGACATTGTGCAAAAAGAGAGCTAAATATGAAGCTTTAGCAAAAGAGAACAACACTTCATACATCAATTCAAATAACAAAAGGATTAGTTTCCGACATGGATATGATACAACAGATGCAGCATCAGAATCTGCAGTAGATTTTAAGAAGATGAGGAGGTCTCATATCCCTGATGATGCAGAAAAGATCAACTTTGCAGAAAGATCACATAAACAATATGAAACTCCAATAAACCAGCAATCAAGAGCACCATTGGCAGTTTTAGCTCAAAACTCTCATAATGTTAACAACTTGCCAGACAAGCATCATGTCTGCAATGTGAAGTTTAGTGGTTATGCCCTAAACAACAAGATTCAAGGAACATTCCTTAAAAAGGATGACCCAAAGATAAATGCATTGATGCAACAAGCAGAGCTACTTAGTTCATTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGGTTCTACAGGAGTTTCTGAACCGTTCCAAAGAATCTGATATTCCTGGATATAAGATTTCAGATTTACAGCTTGATGATCTTAAAGATTTATTGGAAGACTTAAAGTGTAGTAGTGAGGAAATCCAGCCATGTTGGAGGTATATGGAATTTTATGAAGAATCTCCGGGTAGTTCTGAACACAGTACAGGATCAACTCTTCTGCCTCACTCTGCTGGTGACAATTTGGAACAGAAAATGCATCGGGATAGTGGAACTGAGCTGAAGTCTATACAAATTGGAGATCAAGGAGTAGGAGGATGTGATCAAGTGGTTCTTTTAAGTGCAGCTGATCAATTGGATCAAGATATATTCCAATCTTGTGAAAAACAGACAAACAATGATGGCATTGTTTCTTCCTTATCAAGTACGGTGTTTACTTCCCCTCTTCAAGTTACACCTATCTTCAGATCCTTAGCTGCAGGAATTCCTAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTTGGAATGGAGTCTCCATCCCTCAACCCAAGTGCCAACCTCTCACAACCTCCACTCTGCAAAAGAGCCCTCCTACAAAGTTGA

Protein:

Promoter(3k):

>AM04G013820.1
AAGGCTCGAGGGGTTTTAAGAGATGGCTTCGAGTATAGGTTGGGTGATGGTAACTCTTCCTTTTGGTTTGATACTTGGTCTAGTCAAGGAAAATTAAGTAATTATGGTCTATTTGTAGACATTCATGATTTTGTGTTAAAGATGTTGTTCAGAATGGAGAATGAAATCTAGAGCAACTTTATATGCATCTCCACGATAATATCATTGCTGCTATCAAGGCAATGCCTCACTGTTTGAATCACAACATCTGTGATGGTCTCACATGAAAGGTAATTTGGATGGCTTGTATACAGTGAAGGATGAATATCACTGGTTAACGACTGCTAATCATTTTTTGAATAGAGATATAGATCTTGAGTCTTGGAAGTGGGTGTGGAAGATTCCAGCTCCTGAGAAAATAAAGTTTTTCCTTTGGACATCTTGTCATGACGCCCTACCTACTAGAGCTATGTTGCATAATAGAGGAATGTTAATATCCTCCAATTATCCTAAATGTGATGTATTAGGTGAAGACCTCCTCCACTGCTTGAGGGATTGCCATTTTCCTTATCAACTTTGGATGTTAGTATTTGATAACATCAACTTTTTCAGTAATGCTAATTTCATCTCATGGTTAAAGAAGGGTATTGCAGGTACCAATCCGCATATGATCCTTTCAGCTATTTGGCTCAGGAATATGTCACTATCTATAAACTAAATATGCAAATTTACAAAATTGGCTAATTTCTTACAAAAGCTTTTCTTGTGTCCTGCTTCTAGTTCCTTGTCTCCCCGTTTAGTTTCTTGGCATCTTGAGGAGGAACTGAGGTTGTTTTAAATGTAGATGGTAGCAGCTTTGGTAATCTAAGTGCATTGGGATTTGATGGTGTGTTGAGACAAGCTAATGGTAATTGGATTTGTGGATTCATGGGATCTCTGCGATTTACTAGTGCCCTTCATGCTGAGTTAATGACCATTTACCATGTGCTAAGATTAACTTGAGAGAAAGGACATTGTGATGTTGTTTGCTACTCTGATTCTTTGTTGGCCATTCATCTAGTGCACAAGACTGTTAATCTGTGACATCATCATGCAACCATTATTTGCAATATTAAGGAGCTTATTGCCAGTGGCGGATCTAGGACCCGAGGTCGAGGGTTCAAAATTTTTAAAATCACGATTCGCTAAAAATATAATTAAAAACAACTTTAATATATTTAAATAATTAAATTATACAACTCATAACTGTCCCGATAGAGAAATGAGATTCGTGAGTGATGCGTTTGTATGATGTAGTTGAGTGCAATTGGGTCCAGGGGGGTCAAAATATTTTATACAGGAGGTAATCAGACTTTTTTTTTGTTTTGGGGGGATTCAAGTGAACCCCCCTAGTTAGCCTTGGGTCCGCCCCTGCTTAGATTGAAATGTTCAGCTGTCTCACACTTTGAGGGAAACAAATGCAACTGCATATTTTTGGAAAAGAAATGAGCATCTTAATCAGTTGACTGGCAAGAGTTGAAAAACCCCCTGATGACATCAATTTATTTCTTCAATCGGATGCCTCTAGAGTCCTCTTCTTTACGAGGATGTAGTTTTTGTTTTATTGTTTTTTTCCTACTCTCAAGAAAAACCAACAAAAAAAGCACCAAATATTTCCCTCGTAGCTAATTAACAACTATAGAGGGAAAATGAAAAGTTGGAAATGGTAAAAATTGAAATGGTACCAAAGATGAATGAAACACATGAAGTCACGACACGTACCATTTAATTCCAATGCAATGGTTGGGTTGGGTTGCAACGTTTAGCTAGCTGGTTAGATCACGTACCTTCTCATGTTTCCTTAATAATCCAACAAATTCAAACCTCAAATTTCACCCATCCCTAGCTCTCTTCTTTTCCATATTCACCAAAACATGTGCATATAATTACACACACAATTACCACCTGAATCTCTCGTATGGTAGATATCTCAAGTGTTCTCTTTTTCTTTTCTATTGCAAGTAAGTATCATGATATTTAGTGGTATGGTGCTCTTTATTTGCATAGTGGACATTAATAAGTCTACGCCACACTCACATTGCACGTAGCTCATGAGTTTCAGCGTTATATTCAAACTCCCCTTCATACCCGCGCACTAACCCTACCATTCATTGAATTTTTATATTCATTTTTGTCCCACCCCCTTTTTCCTTTCTACACAATTTTTTCATTTATTTATTTTTCTAAGTATATGACCGTTTTCAAAAACGTTAGACAGAGAAACAGAGAAAAACCAACAAAAATAACAAACAAACAAACAAACAAATAAACAGCAGAATCTCAAAACATAGTAGTGGAGAAGTAATTTGTCTACTTGAGAGCTTTGAAAATCACATTTTTCTCATTTGGGTATTCCCAAAGTTTCTTAATTTTTTAGATCTACACAACACAAACACCTTTTCTGGGCTATCAATGTAATACAGCATCAAATACACACAAAGTTCTCTTCTCTTGTCTTGGGTTTCGAAAAATACGATTTTGATGCATACCCATTTACACTTTATAAACCCTTATACCAATTCTTCATTACCCTTTTTCTATCTTTCACCTTTCATGTTGTTTTGTTTTGGTTCCCTAATTTGAACATTAAACCTTGTTCTGTTTCTGTGTTACAGAGGATAAAAAAGAGAGAAAGAAAGAGAGGGTTTGAAAAGTTAGAATCCGAGGCTGTGTTTTTTTAGTAAGGTGACTTTTTGAGAGAATGGAATTTATGCTTATTACGGTTCCCGTTTTGAAACTCAACACAATACAGTGAAGTTGTAAAGGTGAATGAAAGAGAAGGAAGAAGGGTTTTCTCCTTTTTTGATTTGTAATTTTTTTTATGTAAAATCACAAAAAGTTATTTTCATATTATAAAGGGAGAGCGTTGTGTTTAGCATGCAAGTTGGCTTTGGTAAAAGGAAGGGAGCGTTTAAGAAAGAGAGAGAGAGATAGAGACTCACATCAATATAGAATAGAATAAAGAATCACCAAGATAAGATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00249.34	Myb_DNA-binding	26	70	4.10E-27
PF00249.34	Myb_DNA-binding	76	119	4.10E-27
PF13921.9	Myb_DNA-bind_6	27	87	5.90E-21
PF13921.9	Myb_DNA-bind_6	79	127	5.90E-21

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Gene Ontology

GO term	Description	Category
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function

InterPro

InterPro term	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox-like domain superfamily

trEMBL

trEMBL term	Description
A0A8B8LWH4	_

SwissProt

SwissProt term	Description
MYB88_ARATH	Transcription factor MYB88

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G02820	myb domain protein 88
Medicago sativa L.	MsG0580026070.01.T01	_
Oryza sativa L.	LOC_Os07g43420.1	MYB family transcription factor, putative, expressed
Cucumis sativus L.	Csa004769	_
Glycyrrhiza uralensis Fisch.	Glyur001395s00031215.1	_
Codonopsis lanceolata	Cl_chr01_19400T	_
Arachis hypogaea L.	AH15G13480.2	Myb-related protein B like

Expression pattern