Gene detail

Detail information of Am04G013630.1 Annotation

Gene ID	Annotation
Am04G013630.1	Pectate lyase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G013630.1	mRNA	Chr04	47865530	47867338	+

Sequences

CDS:

>Am04G013630.1
ATGTCAAGATTTTCCAACTTCTTCCTTGTTTTCTGTTTGGTGGTAATCATACCAACATTAGTGCAAGCTAATGTCAAAGAGCATCCCAAATACTGGGTAAAGCAGCTAAGTTTGCTCAATGATTCCTATTGGAAGGAAAGAGCAACAACTGCAGCAAAGGCAAACCTTGAAGCCTATACTCCTGACCCACTTGCTGTCTCTTCCAATCTGAGTTTGACTGTTAACGAAATGCTTATTGGTGAGAAAAATGGAAGAAGGAATCTAAGGCAAGGTAAAACACGCGGTCCATGCGAGGCAACAAACCCTATTGATAGGTGTTGGAGGTGTGACCCTAACTGGGCAAAGTACCGCAAGAAGCTTGCAGATTGTGTGCATGGTTTTGGAAACAAAACTACTGGTGGAAAGGATGGGCCTTTCTATGTGGTAACAGATTCATCAGATAATGACATGGTGAATCCAAAACCAGGTACCCTTAGGCATGCAGTTACAAGAGATGGACCTTTGTGGATTACCTTTGCTGCTAGCATGACCATTAGGCTCAACCAGGAGCTCATAATGACAAGTAACAAGACCATTGATGGGAGAGGAGTTAATGTTAAAATTGCTAATGGGGCTGGCATTACTATCCAGTTTGTCAAGAATGTGATCATCCATGGGATCAGAATTTTTGACATTATGGTTGGCAGTGGTGGACTTGTTATAGATGCTGAGGACCACTATGGTCGTAGGTCTAGGAGTGATGGTGATGGAATTTACATATTTGGCTCCAGCAATGTTTGGATTGACCATGTTTCCATGAGAAACGCCAGAGATGGACTTATAGATGCCACTATGGGATCCACTGCTATTACCATATCCAACAGCCATTTCACAGACCACAACAAGGTGATGTTGTTTGGTTCCAGTGACTCCTATGATGGTGATAAGATAATGCAGATCACAGTGGCATTCAATCACTTTGGTAAGAGATTGATCCAAAGGATGCCAAGGTGCAGATGGGGTTTTATACATGTAGTCAACAATGATTATACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAACATCCTACCATTATTAGTGAGGGTAACCGATTCATTGCCCCTAACAACCCTTTTGCTAAAGAGATAACAAAGAGGGAGTATACACAAGAGTCAGAGTGGAAAACCTGGCAATGGAGATCAATCAACGACGTGTACATGAATGGAGCATTTTTCAGAGAAGGTGGATCTGAGCTGACTTCAAGGCCATTCTCAGGGAAAGACATGATCGAAGCTAAGCCTGGAGCTTATGTGGGAAGGCTTACTCGTTATGCTGGTGCCCTCGGATGTAGAGTGGGGAGGCTTTGTTAG

Protein:

Promoter(3k):

>AM04G013630.1
CGAAACGAGCATTAAGTGTAGTAGAAAGTAGAAACGACAATTAAATCATGGAAAGTTAAAACCAGTGGAATGTCATTATGATTTTTAGTTGCCTTAAACCATCGACAATAACTTTTGTAACATTAGCCAATTCCTTAGTAACAGTAAGAAGGATTAAAATAATTGAATAAATAAAATTGTAAAGATGGAAGTTCTAAAAGGTTAACTAAGATAATTTAGACTAGGAAAATGTTGTTCATCACGAATGGACTTTGTGAAAGTCACCCACGAAAGACGTGTGTTGTCTAATGATGAGTTCCATCGAATGAGAGCTGAGCGAACGGCGATGCTCCGCTAGGGTTTTACCCTAGGCGCTGCTGCGGCCGCTATGGCATGTCTCTCTGATGATTTGCTGCAGCTCTTGCCATGGAGTCTAGTTGTTGCTCCGAATCAGGCTTCCTGGCCCTCGCCCAGTTGTTACAAACCATTGAAATCTGCTGATCGTGTTTCTGCTTCTTCTCTCCAGGTGGGTCAAAAGGGGGATTTTAACCCTCGCGTAGGTGCAGCGGCCGAAGCTGTGGCTGTTAGCCGATCTGCTCCCTCTTTGCTTGGTGATCGAAGATTTGTGCCTCTGCTGTCTTCAGCTCTGTCTCGTGATGATTTGTTATTTCCTGAGGCGGCAGCGGCTGCCGTTCCTATGCTGGCGCCTGTTTCGCTTCCAGCGCCTGTGCCTCTGCCGGCTCAATCCGCGTCTCCTTGTGTGATCCTTGCACAACGTGATTGTGTGGAAAGCAGTCTTCTTGATGCCCACCACAAAGCTACACCTCAAGTTGTTGATCAAGAGAGTAAAAAGAAAAATGCTGTCTTTGAGAAATATTTTGTTTCAGCGCTAACAAACTCTTGTATTATCCCTACAAGTCAGTTGCCTAAGCCTTGCATCAAAGGTGATGCTCTCTCTATCAAGATCTCCGAATCCGAGTATCAAGAGGGTGTCAAAGGGTGCAAGAACGTCTTGCATGGCCGCCTTACTTTGCCCAAAGGATCCTCTCCTGTTAAGATTAATGCTTTAAGAGCATAGCTTTTGCAAGAATGGAAGTCTATTGGCTCCTGGACAATGGTCTCTTTAGGCAAGGGTTACTGTGAGTTTTGCTTTCAATCGTTTGAAGAGATGTGTAGCTTACAAGCAATTGGATCATGGTCTTTGCGCCCAGGATTTTTAAGACTCTTTGCGTGGACGCCGGACTTCGATCCAAACACGATTCGTAGAACCAATGCGCAATGTTGGGTTCGGCTTCACGGTTTGGCTCGTGAATATTGGCGTCCAATCACCCTCTTTGAGATTGCTGGTGCAATTGGCGGTCCAATTGCTTTGGATGATGCAACAAAGCAACGTACATTTGGACATTTCGCAAGAATTCTTGTTGATCTTAATCTTAATAGTGCACTTCCTGAGCGCATTATGGTTGAACGTGAAGGTTATGCATTTTACGTGGATGTTGTTTATGAACGGCTCCCATAATTTTGCTCATATTGCCATATCATTGGGCATCAAATCTCCAATTGTAAGCAAGTTCACCGCAATCAGGAACCTAGAGCACAGCCTCCTGCCTCTAAGGTTTGGGAGCCAAAGAAGCAGCTCGCCCCGGATTATGATCGGGATTTGAACAAGATCGACGGTGAGGATATAACTCTCGCAAAAGGTACAACTTCGTCTAGTAATAATATTGTTTGTGATAAAAATGCTGAACAGGGTGTAGTTAGAGATACTCAGAAGGAATTTGCTGCTGGTAATGAGATCGGTATCTCAGCTGATGCCATGGTGGATCTTCCAGATGGTGTCATCTCTATAAGAGAGATTGCAATTCCAAATCAGTTTGGAGGCATTAATAATATTCCTCACAATGACTCAGGTAATAACCCTCTGATGGGTTTTATTCCTAATCATGTTGATTCCAACATTCCGAGTGAAGCACACTCCACCAAATCTCCCACGAATAGGCTTGATTCTGATGCTTCCTATGCGGTGGAGGCAACTGTTTTATGTAAAAATTGGGCAGATATCTCAGATGATGCGGTTGTCTCTAATTCTCAAGCAACAATGAACCTCTTTCCGAAGGCCAAAGTGTCGATTGTCGATTCAGCCTTGAATCCGGCAGTTGAAGCTGACATGAAAATTTTAAGAAGGTTTCGGGGGGAGTCGACAGATGATGTTGGCGATCCGATGCTTCCGGATTCAGCTGAGAGGTACACTGAACCGGTTTTGACCAAGCAACAAAAGAAGAAATTGAGGCAGAAAACTGGTCTGGCTGTTGGATACAACACTCGGTCCAAAGCTAGCTCAGTCTCTGTCTCATTTTGATCTGATGTAGTTTTTTATAAGCCGTTTATTTGGTCTGTTTTTTCCTGCTTTTGGTTGGTTGGTTTTTGGGGGCCTTAGCCTAGGTCTCCCTTTCTCTACTTTTTCTAAAACCAAAATAATTAAAAAACAAAATAAACTAACTTTTGAAATAATAATTATACAACAAATTTTACGCAATTTTTTAAGGGATCCATGCATGTAAAACCCGTTAATATTTAATTCAGGGTCAAGAATTACCAACTCGATTGTAAGGTCAAAATAATCAATATCACCTTTTTTTCTGGATGGTTATGACAAGAAAATCAGTAATGTTCTCTATTAATAGAAAGCTAGTAAACTGATAATTTAACAAGTTTTTTTTGTTCAACAATTTCACAACAAGTTAACACCCAACATTATTCATTGACAGGGACTTATGGTTCTCAAAAACCCTAATTTGGCTTCTCTTTGTATTATCTCCTACATACTGTCATGCATTATCCATATCCCCTCCCATATACATATATATTTTACATGGATTTGTCACCATTGAGCATATTTGATTACCCCTTCCATTGCAGGAAGGAAGAGGGGTTCTTTCCATTTGGCTGAGGTTGGCTTTACATTGGCCATAATCAGCAGAAAAGTTAAAATAAATAAATAAACAGTGGAAAAGAACCATG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00544.22	Pectate_lyase_4	184	366	2.80E-25
PF04431.16	Pec_lyase_N	41	88	1.10E-10

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	PL1

Gene Ontology

GO term	Description	Category
GO:0045490	pectin catabolic process	Biological Process
GO:0016020	membrane	Cellular Component
GO:0046872	metal ion binding	Molecular Function
GO:0048038	quinone binding	Molecular Function
GO:0016491	oxidoreductase activity	Molecular Function

InterPro

InterPro term	Description
IPR011050	Pectin lyase fold/virulence factor
IPR012334	Pectin lyase fold
IPR045032	Pectin lyase family
IPR007524	Pectate lyase, N-terminal
IPR002022	Pectate lyase
IPR018082	AmbAllergen

trEMBL

trEMBL term	Description
A0A1S2XIU6	_

SwissProt

SwissProt term	Description
PLY3_ARATH	Probable pectate lyase 3

KEGG

KO	Description	Enzyme
K01728	pectate lyase	[EC: 4.2.2.2]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G14420	Pectate lyase family protein
Medicago sativa L.	MsG0880044833.01.T01	_
Oryza sativa L.	LOC_Os06g38510.1	pectate lyase precursor, putative, expressed
Cucumis sativus L.	Csa000919	_
Glycyrrhiza uralensis Fisch.	Glyur001242s00026121.1	_
Codonopsis lanceolata	Cl_C18086_unscaffolded_00010T	_
Arachis hypogaea L.	AH13G44590.1	Probable pectate lyase P59 like

Expression pattern