Gene detail

Detail information of Am04G013110.1 Annotation

Gene ID	Annotation
Am04G013110.1	SIN3-like 4

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G013110.1	mRNA	Chr04	45406962	45422415	-

Sequences

CDS:

>Am04G013110.1
ATGAAGAGGTCAAGAGACGACGTTTTCATGAGTTCTCCTCAACTCAAACGACCTATGATTTCTTCTTCTCGAGGAGAAGCGTCGGGGCAACCCCAAATGATTAATGTAGGTGCTCAGAAGCTGACTACTAATGATGCCTTATCATATCTCAAGGCAGTAAAAGATATGTTTCAAGATAAGAGGGATAAGTATGATGACTTTTTGGAGGTCATGAAAGATTTCAAAGCACAAAGAATTGACACTACTGGTGTCATAGCTAGAGTGAAGGAACTGTTTAAAGGGCATAGAGATCTAATATTGGGATTTAATACCTTCTTGCCAAAGGGATTTGAAATCACACTTCCATTGGAAGATGAACAACCTCTCCCAAAGAAGCCTGTTGAATTTGAACAAGCCATAAATTTTGTTAACAAGATAAAGACTCGTTTTCAAACTGATGAACATGTTTACAAGTCATTTCTAGACATATTGAATATGTACAGAAAGGAAAATAAGTCTATCAATGAGGTCTACCTGGAGGTTGCTGCACTTTTCCAAGACCACCCTGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGAAGCTGCAGCTGCCTCTGCTCATTATGCTTCTGCTCGAAACTCTGTGTTTCGTGATAGGAGCTCTGGAATACCAACACTGCGGCAAATGCATGTTGAAAAGAGAGAAAGGAACGTGGTTTCACATGGTGATGGTGACCCCAGTGTTGACCGTCCTGACCCAGATCATGACAGAGGTTTGTTGAGGATAGAAAGGGAGCAAAAGAAACGTGTGGAGAAGGAAAGGGACCGTAGAGAAGATAGAGAGAGAAGAGAACGGGAAAAGGATGATAGAGATTATGAGCATGATGGGGGAAGAGATAAGGACCGGTTATCCCACAAACGGAAATCTGATCGTAAGGCTGAAGACTCGGGAGCTGAACCACCGCTTGATGTAGAACAAAATTTTGGTAGGTATTGTCAAGAGTTGGCTTTTTGTGATAAAGTCAAAGAGAGATTACGAAATCCTGACGACTACCAGGAATTTTTGAAGTGTTTACATATTTACAGCAGGGAAATAATTACTCGACAAGAATTGCAGTCACTGGTGGGTGATTTACTGGGAAAGTATCCAGATCTTAAGGAGGGGTTTAATGATTTTTTGGTACAAGCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTGTGGATTGAAGGACATGGCCAGAAACCGATGAAGACTGATGATAGGGACAGAGATAGGGATCGTTACAGGGATGATGGGATGAAAGAAAGGGACCGCGAATACCGAGAAAGAGAGAAATCTAGTGTGATTTCTAACAAGGATGTTTCAGCTTCTAAGATGTCTTTATATCCCAGCAAGGACAAGTATTTCTCAAAACCAATAAATGAGCTGGACCTTTCTAACTGTGACCGATGCACTCCCAGTTACCGTCTGCTACCAAAAAATTATCCAATACCTATAGCTAGCCAGAGAACAGAACTTGGTGCCGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCTTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTCGAAATGTTGTTAGAGTCTGTAAACGCGGCTATTAAACGAGTAGAAGACCTGTTAGAAAAGATCAATAATAATATAATAAAGGGTGATGGCCCAATTCGTATTGATGAGCACTTAACAGTTCTAAATCTTAGGTGTATTGAACGATTATATGGTGACCATGGTCTTGATGCGATGGAAGTTCTAAAGAAGAATGCACCTCTAGCTTTACCCGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGATGTCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATGCAAAGAATTATCACAAATCTCTTGATCATCGCAGCTTCTACTTTAAGCAACAGGACACAAAAAGCTTGAGCACCAAAGCCTTACTGGCAGAAATCAAAGAAATTAGTGAGAAAAAACACAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCTCATTCTTCCAAACTTGGAGTTTCAGTATCCTGATTCAGACATTCATGAAGATTTGTATCAGCTCATAAAATATTCTTGTGGAGAAATTTGCACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACATCATTTTTAGAGCCCATGCTTTGTGTTCCTTCTCGGCCCCAGGGTGCTGAGGATACAGAAGATGTTTTCAAGGCCAAGAATAATTCTGTCAAGAGTGGCACTTTAAGTGTTGCTGAAAGTGATTATAGTCCTGGTGTTGGTACTACCATAATGAATCCAAAGCATATAAATACTTCTAGAAATGGGGATGAGTGTGTGGCATTAGATCAGTCAACTTCTAGCAAAGCATGTCAATCAAATGGTGATACAGGGGTTAGAGAAGATAAGAGTCTTGATTCTAACCGTACTGTGCGTAAAACTGAAACTGCAGACAGTAATACAAAACATGGTAAACCAAATATTACTGCATTCGTGCCTGATGAACTATCAGAAGTCAATAAGCAAGATCAATCCAGTGAGCGGTTAGTGAATGCTACTGTCTCACCAGCACCTGGAATGGAGCAAAGTAATGGAAAATCAAAGATAGATAATGCGTCAGGACTTATTGCTACCCCATCTCGAAATGGAAATGTCTCTATCGCGGGAGGGCTTGAATTACCTTCATCAGAGGGTGGTGATTCTACAAGACCAGGCACATCCACAAATGGAGGTACTGAAGTTCGCAGATACCGAGAGGAATCAGTTCGACACTTCAAAAGTGAAAGAGAAGAGGGCGAGTTATCTCCAAATGGAGATTTTGAAGAGGATAACTTTGCAGTTTATGGAGATACTGGTTTGGATGCAGCACATAAAGGAAAGGATGGTGGTGTGAATCGGAAATACCACAATAGACATGCGGAAGAAGTTTGTGGTGAAGCCAGAGGAGAAAATGACGCAGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCTGAAGACAGTGAAAATGCTTCTGAAAATCCTGATGTTTCTGGAAGTGAATCTGCTGATGCTGAGGAGTGTTCTCGAGAAGAGCATGAGGATGGAGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCCGAAGGAATGGCTGATGCCCATGATGTTGATGGAGATGGAACGCCATTGCCATTTTCCGAACGCTTTCTACTAACCGTGAAGCCTTTGACAAAACATGTTCCACCAGTGCTACATGAGAAAGACAGGAATTCTCAAGTTTTTTATGGAAATGACTCCTTTTATGTGCTGCTTAGACTTCATCAGACATTGTATGAGAGGATACAGTCAGCAAAGATTAACTCATCCTCTGCTGAAAAGAAATGGAAGGCTTCAACTGGTACTACCTCTACTGATCAGTATGACAGGTTCATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCTGACAATACAAAATTTGAGGATGATTGCCGAGCTATTATTGGAACTCAATCATATCTCTTATTCACGCTAGACAAACTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATAACAAGCTTCTCCAACTGTATGCATACGAGAAATCAAGAAAACCTGACAAATTTGTCGATATAGTTTATCATGAAAATACCCGTGTTCTTCTTCATGATGAGAACATATACCGCATTGAATATTCACCGGATACAAAGAAACTGTCTATTCAACTGATGGACTGTGGACATGATAGGCCTGAAGTGACTGCTGTAACAGTGGACCCGAACTTTTCAGCCTATCTGCACAATGATTTCCTTTCTGTTGTTCCTGACAAAAAGGAGAAGTCAGGCATTTTTTTAAGAAGGAATAAACGTAGATATGCTTCTAGTGATGAATTTTCATGCCAGGCTATGGAAGGACTACAAGTTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCTTCTAAGGTGTCATACGTTTTAGATACAGAAGACTTCTTGTATAGGATGAGAAAGAAAAGGAAAACCTTGAATCCGAAGAGTTCGTGCCAGGAACAGGCAAAGTCTTCAAGCAGAGCCTTAAGGTTCAGCAAATTGTTTTCCTTTACATGA

Protein:

>Am04G013110.1
MKRSRDDVFMSSPQLKRPMISSSRGEASGQPQMINVGAQKLTTNDALSYLKAVKDMFQDKRDKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHRDLILGFNTFLPKGFEITLPLEDEQPLPKKPVEFEQAINFVNKIKTRFQTDEHVYKSFLDILNMYRKENKSINEVYLEVAALFQDHPDLLDEFTHFLPEAAAASAHYASARNSVFRDRSSGIPTLRQMHVEKRERNVVSHGDGDPSVDRPDPDHDRGLLRIEREQKKRVEKERDRREDRERREREKDDRDYEHDGGRDKDRLSHKRKSDRKAEDSGAEPPLDVEQNFGRYCQELAFCDKVKERLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLKEGFNDFLVQAEKNDGGFLAGVMNKKSLWIEGHGQKPMKTDDRDRDRDRYRDDGMKERDREYREREKSSVISNKDVSASKMSLYPSKDKYFSKPINELDLSNCDRCTPSYRLLPKNYPIPIASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELEMLLESVNAAIKRVEDLLEKINNNIIKGDGPIRIDEHLTVLNLRCIERLYGDHGLDAMEVLKKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKHKEDDVLLAIAAGNRRLILPNLEFQYPDSDIHEDLYQLIKYSCGEICTTEQLDKVMKIWTSFLEPMLCVPSRPQGAEDTEDVFKAKNNSVKSGTLSVAESDYSPGVGTTIMNPKHINTSRNGDECVALDQSTSSKACQSNGDTGVREDKSLDSNRTVRKTETADSNTKHGKPNITAFVPDELSEVNKQDQSSERLVNATVSPAPGMEQSNGKSKIDNASGLIATPSRNGNVSIAGGLELPSSEGGDSTRPGTSTNGGTEVRRYREESVRHFKSEREEGELSPNGDFEEDNFAVYGDTGLDAAHKGKDGGVNRKYHNRHAEEVCGEARGENDADADDEGEESPHRSSEDSENASENPDVSGSESADAEECSREEHEDGEHDNKAESEGEAEGMADAHDVDGDGTPLPFSERFLLTVKPLTKHVPPVLHEKDRNSQVFYGNDSFYVLLRLHQTLYERIQSAKINSSSAEKKWKASTGTTSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYAYEKSRKPDKFVDIVYHENTRVLLHDENIYRIEYSPDTKKLSIQLMDCGHDRPEVTAVTVDPNFSAYLHNDFLSVVPDKKEKSGIFLRRNKRRYASSDEFSCQAMEGLQVINGLECKIACSSSKVSYVLDTEDFLYRMRKKRKTLNPKSSCQEQAKSSSRALRFSKLFSFT*

Promoter(3k):

>AM04G013110.1
AGGCTACCAATCTTATTGAGAATATTATTTATTTCAAATATATATAATTGGTACCTCTTTTCCTAAAAGTCAAGTATGCTCATCCTCATGGCATTAGCTTGTAATATTAATATTATGTTTCAACAAAGTTATTTAATATTAAGTATTTTTTTAAAGATTTATTTAATATTAAGTTGTTAACTTATGAAATTTGTTCTAAATATTTATTGAAGCATGATATGAACTTTTAAAATTTATTTAATATATACCAAGCAAATAAAAATAAAATAGGCATGGTGTGTAATTTTAGCAAATTAAGTTTTACAAGTATGAAATATATAGGTCCTAAAAATTTGGGAATTTTTTATATTTTAGTAAATATAAAATAAACATAGTTATTAATTTTACAGGGACGAAATTTATATTATATACTATATAGGTATTGAAAATTCTCGAAATAGAGACCGGGTCCGAGTCATCCGGTTCCGGTTTTGGTCATGCGGTTCAACTGTCGACCCTTCGGTCCGACCCTTGACCCAGTGACCCGGTACCTTCACCGAGTCGGTCACCGGTTCGAGTTTTAAAACATTGAGCGGGAGAGTACTCCCTACCCTCGCCCCATTGCCATCTCTACCAAAGATATTCAAAGATTTTGTCAAAAAAAAAGTATACTAAAGATATCCAATAACCAATCCATCAATTAACATTTTTTTATGGATGGATATCCAATCTGTCAATTAATATTTTTAACACATAAAAAATCTTTTAATAAAAAATACTTTTAATCATAATTTTTAATTTTTTTATGGTAGAATATTAATTTTTTACTGCAGAATTTTTAATTTTTTTCTATTTTTATATATAAATATAATATATATATATATATTTATATAAATATATATTAAAAGAAAAATATATAAATATGGTGGTGGTTTGTCGTGGAGGCGGTGGCTGCCGGCTGGCGGGGGCGACCGCGACAGAGCTTCGTCGGTCGATGCCGGCATCCACGACGGAGCTCCAACAGCACTCACGGTGGAGATACGGCCGCCTGCTGAATTTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACATATATATATATAGGAAAATAATTGAAAAGTGTTTTTAATAATAATTTTTGGTAAAAAAATATTTTCTATAATTATTTCATGGATTTTGATTTTGTAGTTATTGTAATCAAATGGATCTAAAAAAATTGATGGATCAGCTCTAGATGCAAAATAATGTATTTATCTCGGATTTGGATTGGTTGCGGTCATCTCTTCCTATCTCTCTCTAGCTTGCAATTTTTTTTTCAAATTTTTTGACAAAGCAATCAAAGATCGAAAATTATTTTCAAAAAAATCAAAGATCGAAAATATGTGAAAATTAAATCTAATTTTTTTACAAAGAAAATTAAATCTAATGGTACTATTCTAGGAAATTACTTTATATTTTCAAAAAAAGGAAATTACTTTATATTAATATAACTAATTTCTTGTAATTGTTATTCTTCATTGTTGTACCATATATAAATCACCAAAAAAATGTACCAAAAAAAATAATTCACCAAAAAAATTATACCATTTATACCATTATATAAAGGAAATGCCTTTATATAACTACCTTTTGGATTTCCCAATTTCTTTCCAATTTTACGCTTGATATCAAATTTTAATAATATGCGTTATGACGTTACCGATTTTGTTGTGGGGTGTTTTCCTCCCTCTTTTGTCTAATCTCATTATCAAATTTCAAATTAAACAGGATACGACTAGAGCTGTCATATATATTTTTCAGCATATCAAACGCACCCTAAAAGTATTTACAAAGTTTCATATATATATATATATATATATATAATAAAAAACAAAGTAAAACACTATTAATTGTTTTCACTCATTCTCTCACTATCTGTTAGACCTAATTTCATGATCATCCGAAGGAGTCTTGCAAAATTCACCAACAACTACTAATCACAAACTCATACCAAACAAATTAAAAAGTGACCGATCGAAGTAAAACCCTAACCCCATTAAAAAGAAGTCTAAAACCAACAACTAAAGTATCATGACCAAAATGCCCCCAATCGGCACTGCATAATCATCAATTTAGTTTCGTTAAATCTGTCATTAATTTGGTCAAAAAAAAAATCTGTCATTAATCGACCCATACAATAGAATCTATATTAGACCCAAATCCTTATTTTTTTTTTATAAGATAAGATAAGATTAGACCCAATTCCTATATTTCATTTAAAAAAGGTAAGAAGAATTAACCGTTTATAAGCGGTGAACACTGTGTAGGTTACCGGATAAAAAGGTTAAATTTTACAATCGCGACGCCACCCCTTATTTTTCCCGTTCTCTTATATATCACATTGTGAACTCTAACCTTCTCTCTTTTTTCTTCGTTGTCTCTTCTTCTTTCTGTTCTGCTTGTTTGCCAGAAAATCAGAGAAAATAATTCTCTAATTCGTAGTGAACGAGCAAAATTTTTATCTATAAAAACCTTTGTGTTTTCTCTCAGTACTTCAACGTTGATACTTTCTGAAGAATCAGAGAGGTTTTAGAAAAAACTCTGTGATACAAAACCTTTTTTTTTTCTATTTATTTTTCCTTTTCATTTTCTATCGGATTCTAAAGACTCATCAGTTCGTAAACTTCACGATCACTCTGTAAATTTCCGTTTCCTTAGTTTGAATTCATCGTTATCTTGCTTTACATTGAAGTAATGCGAGTTTCCACTTCGGATTCTTGATTTTTTTTCTTTCAGGATTTGGATTCTTCGTGGTGATCTTTTTGCGAAGGCTGGGGTTCGTGTTGATTCCTTGTGGTTAGATCTGAAGTCTTATCGTTGCTGCTATTCGAATGAGTAGGTTGAAGTTGGAGAATTTTTAAATTATCAAGTTTGGAATTGTTGAAGAGGGAGAAGGTGATAGATAGTGTCGTTTCTGCGTTTTATGTTTTTATGGTTTGTTGATAGCG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF16879.8	Sin3a_C	1123	1369	1.80E-59
PF02671.24	PAH	62	106	1.80E-44
PF02671.24	PAH	148	192	1.80E-44
PF02671.24	PAH	343	387	1.80E-44
PF08295.15	Sin3_corepress	484	574	1.20E-35

Gene family

Gene family	Subfamily
Transcription Factors Family	Others

Gene Ontology

GO term	Description	Category
GO:0000785	chromatin	Cellular Component
GO:0070013	intracellular organelle lumen	Cellular Component
GO:1902494	catalytic complex	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process

InterPro

InterPro term	Description
IPR039774	Transcriptional regulatory protein Sin3-like
IPR031693	Sin3, C-terminal
IPR036600	Paired amphipathic helix superfamily
IPR003822	Paired amphipathic helix
IPR013194	Histone deacetylase interacting domain

trEMBL

trEMBL term	Description
A0AAN9JXD9	_

SwissProt

SwissProt term	Description
SNL4_ARATH	Paired amphipathic helix protein Sin3-like 4

KEGG

KO	Description	Enzyme
K11644	paired amphipathic helix protein Sin3a

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G70060	SIN3-like 4
Medicago sativa L.	MsG0580025907.01.T01	_
Oryza sativa L.	LOC_Os01g01960.1	transcriptional repressor, putative, expressed
Cucumis sativus L.	Csa012578	_
Glycyrrhiza uralensis Fisch.	Glyur000961s00028329.1	_
Codonopsis lanceolata	Cl_chr01_21900T	_
Arachis hypogaea L.	AH05G10880.1	Paired amphipathic helix protein Sin3-like 4 like

Expression pattern