Gene detail

Detail information of Am04G013090.1 Annotation

Gene ID	Annotation
Am04G013090.1	DEAD/DEAH box helicase, putative

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G013090.1	mRNA	Chr04	45381891	45389225	+

Sequences

CDS:

>Am04G013090.1
ATGGCTATATCCATAGCTACCAACACTCAACTTATCCTCTCACTCCAACCTCGACTCTCTTCTTATTCACTCTTTCCAAAAACTCTCCCATTCTCTCTCCTCCGCCATCAACCCCCCTCTCCCTCCCTCAAATTCCGTCTCCCCTTCTCCTTCAAATCCCCAACCTCAACCATCCGCGCCTTCGATGCCGAAGACGAAGAAGAAGAAGATGAGGACGATGAAGAAGAGGACGAAGACGACGAAGATGTTGCCGCTGACGAATACGACGACATCGTTTCGGTTGAAGTTCCCGACGAAGGTGAGGCGTTTGAGGCTGATGCATTGGCTCGCCATGACGATGGATTCAAGTGGCAGAGAGTTGAGAAGCTTTGTAATGAAGTTAGAGAGTTTGGAGTAGAAATCATTGACATTGATGAACTCGCTTCCGTTTACGATTTTCGGATTGATAAGTTTCAGCGCCAGGCGATCCAAGCTTTTTTGAGAGGTTCGTCGGTGGTGGTTTCTGCTCCGACGAGTAGCGGGAAGACTTTGATAGCAGAAGCTGCGGCGGTGGCCACGGTGGCTAGGAGACGAAGAATATTCTACACTACTCCGCTGAAGGCGTTGTCGAATCAGAAGTTTCGTGAATTCCGGGAGACTTTTGGCGACAATAATGTTGGCCTCCTTACAGGTGATTCCGCCGTCAACAAGGATGCTCAGGTTCTGATTATGACTACGGAGATATTACGCAACATGTTATATCAGAGTGTTGGTAATGTTTCTTCTGGAAGTGGACTTGTCCATGTTGATGTGATTGTCTTGGATGAAGTTCATTACCTTAGTGACATATCTCGTGGTACAGTTTGGGAAGAGATTGTTATTTATTGCCCTAAAGAAGTGCAACTTATTTGTCTGTCGGCAACTGTTGCAAATCCAGATGAGTTGGCTGGTTGGATTGGTCAGATTCACGGTCAAACAGAGTTAGTAACATCATCAAAACGCCCAGTTCCTCTGACTTGGCATTTTTCTATGAAGAATTCCTTATTACCACTTCTTGATGAGAATGGAACACAAATGAACAGGAAGCTGTCACTCAATTATTTACAACTTCAAGCTGCAGGTGTTAAACCTAACAAGGATGATTGGGCTAGAAGAAGGAATTCCCGGAAACGTGGAGCTCGCACAAGCTACGATATTGATGATAGCCTGTTGGAACAGCATTCTCTTTCAAAGAATAACATAAATGCTATTCGTCGATCACAAGTTCCTCAAGTAATTGATACGTTATGGCACCTTCAGTCCAGGGATATGCTACCAGCTATCTGGTTTATTTTTAGCAGAAAGGGTTGTGATGCAGCTGTCCAATATGTTGAAGATTGCAAACTTTTGGATGAATGTGAAACAAGTGAGGTTGAACTAGCCTTGAAGAGGTTCCGCATTCAGTATCCTGATGCTGTCAGAGAAACAGCTGTGAGAGGACTTTTACAAGGGGTTGCTGCACATCATGCTGGATGTCTTCCTTTGTGGAAGGCCTTTATAGAAGATCTGTTTCAAAAAGGACTTGTCAAGGTCGTTTTTGCTACGGAAACCCTGGCTGCTGGAATCAATATGCCTGCTAGAACATCTGTTATTTCATCCCTCAGCAAAAGAAGTGATAGTGGTCGTACCCAATTAAGCCCAAACGAACTGCTTCAGATGGCTGGTCGTGCTGGACGTAGAGGCATTGATAAAAGTGGTCATGTAGTTCTCATCCAAAGTCCTAATGAAGGCGCTGAAGAATGCTGCAAGGTACTGTTTTCTGGACTTGAGCCTCTGGTGTCGCAGTTTACTGCTTCATATGGAATGGTTTTGAATCTTCTTGCTGGTGCGAAAGCCATTCGTCGGTCAAATGAATCAGATGACATGAAACCTACCTCAGGGAGAACTTTGGAAGAAGCTAGGAAGTTAATAGAGCAAAGTTTTGGAAATTATGTTAGTAGCAGTGTTATGCTGGCTGCTAAAGAGGAACTTAATAAAATTGAAAAAGAAATTGTGTTGCTAATGTCAGAAATCACTGATGAAGCCATAGATAAAAAAAGCAGGAAGGCTTTATCACAGCGGCAATACAAGGAAATTGCAGAATTGCAGGAAGATTTAAGGGCAGAAAAACGTGTTCGTACTGAATTGCGGAAACGAAAGGAAGCAATGAGAATCTCTGCATTGAAACCTTTATTGGAAGAGTCTGAAAATGGACATTTACCATTTTTGTGCTTGCAGTATAGAGATTCTGAAGGAGTTCAACATTCAATTCCTGCTGTGTTTTTGGGGAAGGTTGACTCCCTTAATGCTTCGAAACTCAAAAACATGATTGGTTCTGTGGATGCTTTTGCATTAAAGTCAGCAGACGCAAAGCCAAGTACTGATTCTGAAATGAATGAAGATCTTGTACCATCATATCACGTAGCTCTTGGTTCAGATAACTCTTGGTATCTATTTACAGAAAAGTGGATTACAACAGTATATAAGACAGGCTTTCCCGACGTTTCATTAGCTCAAGGGGATTCTCGACCTCGAGAAATTATGAGTGATCTACTTGATAAGGAGGACATGAACATGAAGTGGGATAAGCTTGCTCACTCTGAAAACGGTGGTTTATGGTTCATGGAAGGATCTCTAGAGACATGGTCTTGGAGCTTGAACGTTCCTGTTTTGAGTAGCTTTTCTGAAAAAGATGAGCTGCCACTGAAGTCTCAAGCCTACAGAGATGCAACTGAACAGTACAAGGAACAAAGAAATAAAGTTTCACGCTTGAAGAAAAAGATATCTCGCACTGAAGGCTACAAAGAATATAATAAAATCATAGACGCCGTCAAGTTTACTGAGGAAAAAATCAAGCGACTGAAGACTAGATCCAAACGTTTGATTAATCGGATAGAACAAATTGAGCCCTCAGGTTGGAAGGAGTTTATGCAGGTTAGCAATGTCATACGTGAAACCAGAGCTTTAGATATTAATACACATGTCATATTTCCGCTTGGCGAAACTGCAGCTGCAATTCGAGGAGAAAATGAGCTATGGCTTGCCATGGTTCTTCGCAGTAAAATATTACTAGAACTAAAACCTGCACAACTTGCTGCAGTGTGTGCAGGTTTAGTGTCCGAGGGTATCAAAGTCAGACCCTGGAAGAACAACAATTATATTTTTGAGCCTTCTGCAACTGTAGTCAATATCATAAAGTTATTGGATGAGCAAAGAAATGCCCTATTGGAAATTCAGGAGAAACATGGGGTAACAATATCTTGCTGTTTGGATAGCCAGTTTTGTGGTATGGTTGAAGCCTGGGCTTCTGGGTTGACATGGAGAGAAATAATGATGGATTGTGCAATGGATGACGGTGATCTAGCTCGCCTCCTTCGACGGACCATTGATCTATTAGCTCAGATTCCAAAATTGCCAGATATTGATCCATTGTTGCAGCGCAATGCAAGGGCTGCTTATGATGTCATGGACCGGCCTCCAATAAGTGAACTTGCTGGATAG

Protein:

>Am04G013090.1
MAISIATNTQLILSLQPRLSSYSLFPKTLPFSLLRHQPPSPSLKFRLPFSFKSPTSTIRAFDAEDEEEEDEDDEEEDEDDEDVAADEYDDIVSVEVPDEGEAFEADALARHDDGFKWQRVEKLCNEVREFGVEIIDIDELASVYDFRIDKFQRQAIQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARRRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSGSGLVHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGQTELVTSSKRPVPLTWHFSMKNSLLPLLDENGTQMNRKLSLNYLQLQAAGVKPNKDDWARRRNSRKRGARTSYDIDDSLLEQHSLSKNNINAIRRSQVPQVIDTLWHLQSRDMLPAIWFIFSRKGCDAAVQYVEDCKLLDECETSEVELALKRFRIQYPDAVRETAVRGLLQGVAAHHAGCLPLWKAFIEDLFQKGLVKVVFATETLAAGINMPARTSVISSLSKRSDSGRTQLSPNELLQMAGRAGRRGIDKSGHVVLIQSPNEGAEECCKVLFSGLEPLVSQFTASYGMVLNLLAGAKAIRRSNESDDMKPTSGRTLEEARKLIEQSFGNYVSSSVMLAAKEELNKIEKEIVLLMSEITDEAIDKKSRKALSQRQYKEIAELQEDLRAEKRVRTELRKRKEAMRISALKPLLEESENGHLPFLCLQYRDSEGVQHSIPAVFLGKVDSLNASKLKNMIGSVDAFALKSADAKPSTDSEMNEDLVPSYHVALGSDNSWYLFTEKWITTVYKTGFPDVSLAQGDSRPREIMSDLLDKEDMNMKWDKLAHSENGGLWFMEGSLETWSWSLNVPVLSSFSEKDELPLKSQAYRDATEQYKEQRNKVSRLKKKISRTEGYKEYNKIIDAVKFTEEKIKRLKTRSKRLINRIEQIEPSGWKEFMQVSNVIRETRALDINTHVIFPLGETAAAIRGENELWLAMVLRSKILLELKPAQLAAVCAGLVSEGIKVRPWKNNNYIFEPSATVVNIIKLLDEQRNALLEIQEKHGVTISCCLDSQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLAQIPKLPDIDPLLQRNARAAYDVMDRPPISELAG*

Promoter(3k):

>AM04G013090.1
TCTTGCCGCCATGACTAGTGCCAGGGCCACCTTTTTGATCTTCTGATATCTCAATTCGGGCCCTTGCAGGAGTTTACTGACGAAATATATCGGTCTTTGTTCGAGCTCGGTTTTTCTAATTAATACATCGCTGAGGGCTTCTTCTGCCACGACTAGAAAGAGGTAGAGGGTTTCGCCTTCAACTGGTCTCGTTAGGATGGGCGGTTCCATAAGCATTCGCTTGAGATCGGCCAGAGCTTGCTTGCAGTCGGGGGTCCATTGAAACTTGACACCCTTTTTGAGGATTTTGAAGAAAGGAAATGACCTATTGGCGGCTTTGGAGACAAATCTTGACAAGGCGGCGATCATCCCAGTTAATTTCTGGACTTCTTTCCTGGAAGTCGGGGGTCGCACGGCCCTGCATTTATCCGGGTTAGCCTCGATTCCTCGCTTTGTTAGGCAAAAATTGAGGAATTTCCCAGCCCGGACCCCGAAGGTGCATTTCTCAGGGTTGAACCTGAGGTTATTCTTTCTTGCTTCGGCGAAGATTTCTGTCAAGTTGGCGAGGTGGTCCTCGTCGAATTTTCTTTTCACGATCATGTCGTCCATGTAGACCTCCACAACCTGTCCTATTTGGTTCTGGAATACCTTGTTCATCATGCGCTGGTAGATAGTGCCGACATTTTTTAATCCGAACGACATGACTCGGTAACAATAATTGCCCCCTATCTGTTATGAAGGCGTCTTTTCCTGATTGGGAGGGTACATCGGTATTTGGTTGTACCCGGAGTACGCATCAAGGAATGAGAGGAGGCAGAACCCTGACGCGATGTCGACGAGTTTATCCACTTTCGGGACCGGGAAGGCATCTTTTGGGCATGCCTTATTGAGGTCGGTATAGTCCACGCACATCCGCCACTTACCGTTGCTCTTTTTGACGAGCACAACGTTCGAGAGCCAAGTGGTATACTTGACTTCCTGGATGAACCCTGTTGAGATGAGGTCGGAGACGGCCTTAGCAGCAACCTCGACCTTCTCCTTATTTTTTGCACGTCTTTTCTGCGCGACCTATTTTGCCTCGGGGTTGACAGCGAGGTGATGGCACACGACTTTTGGGGGAATATCTGGCATGTCTGCCGCTGACCAGGCGAACAAATCTGCATGTTACTTGGGGCAGGCTATGAGCCCTTTTTGCACATGGTCCGGGAGGCCGGCTCCGAGCTTTACTGTTTTGGCGGGATCTTCTCCCAGGGGTACTTCCACAAATTCCCCGTCGGGTTCGTGGCGTTTAATTCTATTTTTTAATTCTCTTGTGAGTTCGTCATCTTGCCCGTCCTCGGAGCTGTCCGGGTCGTATCGAGCGTCTAGGTCGGGCAAGCTGACTTCTGGAAGGACATGTTCGTCTTCCATTGGTCTTTCCTCATCCCTCTTCTCAGAGTGACGCACCGATTTCGCAGAGGTAGTGATGCTTTTTCGCAGCCTCCAGGTCGGCGGCTATCGTGATAAATTCATTTTTCCAGTGAGTAGAATTTCATTTTTGGACGGACTTTGAGGCCACAGCCCCCAACGCTTCTAGGGTCGGTCTTCCGACGATGCAGTTATAAGGGGATTTACAGGGGTAAAACCAAGAACTGCGTTTTTACCGCGCGTGAGAGTTTTTCGGTTCCGTAGGTGACCATGAGTTCAACGTACCCGAGCGGCCGAGTTTTTACCCCGGTGAAACCTGATAAATCTGTGCCTCTGTAAGGAGTGAGGTCGGTCACATAAATCATTAATGTCGGTAGAAGGTCTTGGAACATGATATCTGCTGAGCTCCCTTAATCCACCAATATTAATGGAACATACCCGTTGACAACACCGTTCAACAAGTCATGGTCTGAGAAGGCAAGTGGAGGTCGGGTCGGCATTTTCTTGCGGGTCGGTTTACTGGATACGCTCAGTATTTCCTTCCATTTTCTTTTCAGAGATCGCTTGGTCTCGCAGGAATCGACAGAATAGCCACCTAGGATCACAACAGCTATTGTCCGAATCCGACGTAGCTTCGAGGCCCGGTCTGGCTTGAGGACTGTTCTGAAGAGGTTTCGTCGAAGAGGTAGTCTTTGCGTAGGGGGTCGACCTCGTGGAGCCATGGGATAAGACTTGGTTTCAATGAGAGTTTAATGATCAACTCCCACTGTGGTCGCCAAATGTTCGGTACCTTGCCTTAGGATACATGATCCGGGAAGAGCAGTTGGTATCTTGAGCCTTGTGATAGTCCTTTCCTAAATTGAGGCCGGATCAGTGCTTCGGAAGTCAGAATCTTCCGAGGTTGAGATCTTCTGCGTCTTCTTCCTCCGAGGTTGGACTCGGCGAGCTGGGTACCTGCAGACACTTCGATGCCAAAGTCAGCAATCAGAAGTCAGTGAGAGGTACAAATGAGCAAAAACGTACATGATCTTGGAGGTTGGTGTTGTATTTATAGACGCGGAGTTGGGGGTCCTGCGGGTCTTGCCCAATCCGGAGCCGTTGGATTGGGGCGCCGCGATCTGGGCCGTTGATTTGGAATCCGTGCGATTATTTCCTTGTTGGGCCGGATCCAGTGCTGGATTGGGCCGTTCTTCATGCGGATTGAGCCTCTTGGCCACGAGTACGATTTTGCCGGCCCGTGTGATTCTCCCTTCCGAACAGAGTTTTTGTCACACCTAAAATTCGAATCCAAGACCTTGAAGTGAGATCTAAATCCACTTACAAGAGACACACCGACCCTTCTTTGGTATTAGACATTAGTTTTGAACAAGAAGATTCCACCCAAAAAAAGGTTCTGAACAAGAAAATCTTAAAATTTTGTAACAAAAAAATACTAAAATTACGAAAAAGATGTAATGGAGCCAAAAGATTTTGTCATGACACTGATCCGTGTACGTTTCGGATATCATCCAACTCTTGCATTGTTCCACCTAAAAAAATCTAATCTAATCTAAAAAATCTAAAAAATATAAAGACAAAAGCCGCAGGGAAAGCAAAACCTGGCTATCTCCCGCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF08148.15	DSHCT	994	1160	6.80E-37
PF00270.32	DEAD	151	303	1.40E-21
PF04851.18	ResIII	148	302	4.70E-09

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0016554	cytidine to uridine editing	Biological Process
GO:0009793	embryo development ending in seed dormancy	Biological Process
GO:0000373	Group II intron splicing	Biological Process
GO:0016441	post-transcriptional gene silencing	Biological Process
GO:0006397	mRNA processing	Biological Process

InterPro

InterPro term	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR011545	DEAD/DEAH box helicase domain
IPR012961	ATP-dependent RNA helicase Ski2/MTR4, C-terminal

trEMBL

trEMBL term	Description
A0A3Q7YC83	_

SwissProt

SwissProt term	Description
ISE2_ARATH	DExH-box ATP-dependent RNA helicase DExH15 chloroplastic

KEGG

KO	Description	Enzyme
K26077	ATP-dependent RNA helicase ISE2	[EC: 5.6.2.6]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G70070	DEAD/DEAH box helicase, putative
Medicago sativa L.	MsG0580025906.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa012666	_
Glycyrrhiza uralensis Fisch.	Glyur000961s00028330.1	_
Codonopsis lanceolata	Cl_chr01_21910T	_
Arachis hypogaea L.	AH05G10900.1	DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic like

Expression pattern