Gene detail

Detail information of Am04G012530.1 Annotation

Gene ID	Annotation
Am04G012530.1	Adaptor protein complex AP-1, gamma subunit

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G012530.1	mRNA	Chr04	39953882	39974599	-

Sequences

CDS:

>Am04G012530.1
ATGAACCCTTTCTCTTCAGGAACGCGTTTGAGGGACATGATTCGGGCCATACGTGCTTGCAAAACTGCGGCAGAAGAGCGTGCTGTTATAAGAAAAGAATGCGCAGTCATTCGTGCTTCCATAAATGAAGATGGTCAAGATTATAGGCATCGAAATCTTGCTAAGCTAATGTTTATTCATATGCTTGGTTACCCCACACATTTTGGTCAAATGGAGTGCCTTAAGTTGATAGCGTCTCCCGGATTTCCGGAGAAGAGAATAGGTTATCTTGGCCTCATGTTGCTTCTTGATGAAAGACAAGAAGTTCTTATGTTGGTCACAAATTCTTTGAAACAAGATCTTAATCACACAAATCAATATATAGTTGGACTTGCACTTTGTGCATTGGGAAACATCTGTTCAGCGGAAATGGCCCGTGATCTTGCACCCGAGGTTGAGAGATTGCTACAATTTCGTGATCCCAATATTCGGAAGAAGGCAGCATTGTGCTCTATAAGGATCATTAAGAAAGTTCCAGACTTGGCAGAAAATTTTGTCAAACCTGCTACTTCCTTACTTAGGGAGAAGCATCACGGTGTTTTGATCACTGGGGTCCAGCTTTGTACAGATCTGTGTAAAATTAGCACTGAAGCTCTTGAGCATATTAGGGAGAAATGCACAGATGGTTTGGTTAGAACTCTTAGAGATCTAGCAAACAGTCCTTATTCACCAGAGTATGATGTTGCTGGCATCACTGACCCATTTCTCCACATCAGATTGCTTAAGCTTTTGCGGGTGTTGGGTGAAGGTGATGCTGATGCTACTGACTCTATGACTGACATACTTGCCCAGGTGGCTACCAAAACTGAGTCAAATAAAGTTGCGGGGCATGCCATTTTATACGAGTGTGTTCAAACAATAATGAGCATTAAACATGACAGTGGCCTACGTGTACTTGCCATCAATCTCTTGGGAAGATTCTTGTCAAACCGTGACAACAATATCAGATATGTGGGATTAAATATGCTAATGAACGCCGTAACTGCTGATGCTCAGGCAGTGCAGAGACACCGTGCAACAATTTTAGAATGTGTAAAGGATTCAGACGCTTCAATCCGGAAAAGAGCCCTTGAACTTGTATATGTTCTGGTGAACGAAACTAATGTGAAGCCATTAGTGAAAGAGCTTATAGATTATCTGGAAATCAGTGATCATGATTTCAGAGGGGACCTTACTTTTAAAATTTGCTCCATAGTTGCAAAGTTTTCCCCAGAGAAGATCTGGTACATTGATCAGATGCTAAAGGTTCTGTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTGTGGTATGCCTTAATTGTTGTGATAAGCAATGCTTCCGAGCTTCATGGATATACAGTGAGAGCATTGTACAGGGCATTTCAAACGTCAGCTGAACAGGAGACTCTAGTTCGAGTTACAGTGTGGTGCATTGGGGAGTATGGTGACATGTTAGTCAATGGTGTCGGAATGCTTGACATAGAAGATCCAATAACAGTGACTGAATCAGATGCAGTGGATGTTGTAGAGATTGCTATAAAAAGCCATTCATCAGATCTTACCACAAAAGCAATGGCTTTGGTTGCCTTTTTAAAGCTCTCTTCACGTTTCCCTTCTTGTTCAGAGAGGATCAAAGAAATTATTGTACAGTTCAAAGGGAACCTTGTGCTAGAGTTGCAGCAGAGAGCTATTGAATTCAATTCGATTATGGCTAAGCACCAGAATATTAGGTCTACTCTTGTAGAAAGGATGCCGGTTTTGGATGAGGCCACTTTCATAGGTAGGAGGGATGGATCTTTGCCAGGCACCGCTTCTACAACAACTGCACCTTCAGTTAGTCTTCCAAATGGAATTTCCAAACCTGCAGCTCCTCTTGTAGATCTACTCGATCTAAGTTCAGATGATGCTCCTGCACCTATCTCTTCTCGTGGCGATTTTCTTCACGACCTTCTTGGTGTTGATCTGTCACCAGCATCACAACAATCCGGTGCGGGTCAAGCATCAAAAAGTGGCACCGATGTTCTTTTGGATCTTTTGTCTATTGGATCACCCTCTGCTCAGAGCAGCTCATCTACAATCGACATATTATCCTCCAACACTACTAACAAAGCACCAGTTTCACCATTGAATGATCTCTCACCTCTTTCACTTTCTTCAAGAGCTACGTCAAATGCTGGTCCTATGTTGGATTTATTGGATGGTATTTCCCCCAGCCCACCAACAGAAAACAACGGATCACTTTATCCATCCATAACTGCTTTCGAGAGCAGCTCCTTGCAGTTGACGTTTAATTTCTCAAAACAACCAGGGAACCCACAAACAACAGTTGTCCAAGCCACCTTTATAAATTTGTCTTCTAATACATATACAGATTTTGTTTTCCAGGCAGCAGTTCCTAAGTTTCTTCAATTGCACTTAGATCCAGCTAGCAGCAATACTCTCCCTTCTGCTGGAAATGGCTCCGTCACACAAAATTTGAGAGTTACTAATAGCCAACATGGAAAGAAATCTCTTGTCATGCGCATAAGGATAGCGTACAAGATCAATGGCAAGGATACCCTGGAGGAAGGACAAATCAGTAATTTTCCTCGTGAATTATGA

Protein:

Promoter(3k):

>AM04G012530.1
GAACAATGATGCTGATTTTAGCGCAACGAAGACAGAGTGAGGGTGCGCAGAGCTCGTGACGCAGAGATGGCAAAACAAAGTGACGGCGACGGCGTGACAGGGAAACTGAGAGAGTCGATGGTGAGCTGGTGACGGCGAGGGAGAACACAACGCTGGTGATGGCGACAGAGAGCTAGGGCGAGGGCAAACGAAGCCAGAGTGAGGGCGACGCAGAGCTCATGACGCAGAGATGGCGAAACTAAGTGACGGCGACGGCGTGACAGGGAGACAGAGAGAATCGATGGTGAGCTGGTGACGGCGAGGGAGAGCTAGTGACGGCGAGGGAGATCAAGACAACGCTGGTGAGGTCGAAAGCATGTGAGAGGATTTTTGACAATAGGGAAATGTGAGAGGATAAGCGTGAATGAGACGGGGAGACAGTGAAAATTTTGATAGTGACAAATACTTTGTTAATCGGTTGTCTACAAACCCGATTCTAAATGCACATATTCCTAATCGATTGTTTATAAAACCGATTCAAAATGTCCAAATATAGACATTTTGAATCGGTTCTTTAAAGAACCGATTCAAAATGTATAAAAAAATCTCTCAAACATCCATTTAATTGCAGTCTACATTTGGAATCGGTTATTCAAACAACAGACTCCAAATAGTGCTTTTTAAAGCAGATTTTGCACTAGTGTAAATTTTTAACATTGTCTTCACTATTTCTCTTTTTCCTTTTCCTTCTTCTGTTAAACCTTCATCTTCTTCCTCTCCAACTCCATCAATATCTGGTTCCAACTCATTTCCTCCACCTTTTTCCTCATTTTCTTCATTTTCTTCTATAACTTCCTCAAAATCTGGTTCCAACTCGTTTCCTTCATATTCTTCCTCATCATTTCCTTCATCTTCTTCCTCTCCAACTCCATCAATATCTGGTTCCAACTCATTTCCTCCACCTTCTTCCTCATTTCCTCCATCTTCTTCTATAACTTCCTCAAAATCTGGTTCCAACTCGTTTCCTTCATATTCTTCCTCGGCAACTCCCTCAAAATGTGGTTCATCTTCAACTCTTTCCAATCCCGTAACTTCATGTTCAACTCCCTTAAAGTCTTGAGAATCTTCAACTATTTGCAACTGTGTGTCTTCATCATCTAGAGAATCTTCAACTCTTTCCATTGAGTCCCCTCAACTATTTCCATTGAGTCTTCTATTCTTTCCATTGAGTCTTCTGCTGTTTCCATTTCAGCTAAGTGTAGGTGTATTTAACTTATAGAGGGACTGCGGGAGTATATGGAAAGAGACTCAAAGGTTGGTTTTTCTAAAACATTTAATGGAAAAACTATTCACGAGAAACTTGCCTGGCTCAAGGTAACCATTAACAAAAGTGAACGCATGCAGCAGGTTTTCAGAAGTTACTAGCCTGAGGATAAAGTTGGAAAAAAAAATTACTTTAGCTTGGAAAACTGAAAACGACTATTATTTTGAAATTTTACTCCCTTGCTTAAACGTCTATTTTTTTTTATTAATTAGGGTATCTACTTCCGAACGTAGATAGGCATGACAACATAACCCGAACCCGCGGGTACCCACCCGATCCTGCCCCGAGTTTTACGAGAAAAACCCGCTTTGACTGGAAACGGTTTTGGGTTTGGGGATGTCGATACCCACCCCGTCCCCGCCCCGAACCCGCTCGACAAAACATAAATTAATTATTTTATTTTATTTCATGCATATTTACTCATTTATTTTGTTTCATAAATTTTGTTTATTTTTAATTTTGATCTATTATTATAGAAAAATCTATTTTAGTACTTTTAACTTTATTTTATCATTGTATAATTATTATTATTTTATTTTATTAATTATTATAAATATATTTTTTGTATTTTTTCTATAAATTTTTGGCGAAAACGGGTACCCGCGGGAAATCTGTCCCCGTTTGGGACGGGGTTGGGGGATGCAAAACCCGACCCCGATAGAGGTAGGGGCGGGGACGGGGAATGCCAAACCCAGCCCCGACCCGCCCCGTTGCCATGCCTAAACGTAGAGAGTAATTTTTTTATTTTGATAAATTAAACACAATAATTAATACCAGAATAACTTGTACCAAAAAAAATTAATACCAGAATAACACAAAATTTGATAAAACAATTTTCAATAGCGGAAACAACATGAATGTACGAAACAGTCGACCCTACTCATTTAGCCTATTCATTATTTGGTTTTCTCTAAACACTTTAATTTGAGAGACAAACGTTAAAATCTTATATATAAATCTTGTGGAGTCTTGTAACAAAAAAAATTCATAACATATCTTAAAGATATAAATCTTGTGTAGTCTCCAAGTGGGTCCCTCCCACTTTTGGCGCCAAACTCCCCACCCACTCTATTTTAGTTTTAAAGTCTGCGATCGCATTTTTTATTACATATTTTGTTTAATGCATACTTACCTACAATTTAAATAATATTTTCTCATGTAGTGTGTTTTTGGATGCTTTAGTGATCGCAATAGTATGTTTTTTTATGCTTTAGTGTTTGCAAAAGAATCCAACGATTCAAATATGCAGAATTTGCGCCTCAAAAACCGGTTTGGTGAAAAAAAAAATATTTTCCTGACAAAATACATAGTGTGATGCTAAACAGTGTATTTTGAGGTACTTTAAAAACGAGAATTTTTTATATTGGAATTTTAAAAACAAATTTTAACGAACAAGAATTTGATATTAAGTAAAGTTTTTGACCCGTCTCACGCACCTGTCCACGCGCCAGTTGTAAAAATCGTTGCAAAGTGGAAGAGAGAAAGAAAGGGTGCGGTGTTGCTGTTGAATTGATTTCCCCGAAATTCACAGAGCTCACGCACACACAAAGGGAAACACTAGCACTCCCTTCGTATCAGATCCGAATCTCTCTCTTTTCCTTCTTCACCGTTTCTCCGATTCCGGCGGGCCGTTTAATCGATTTCTTCCCTTCGGGATTTGATCCAATTGAATTTCCCGGTGGACACAAATATCAATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01602.23	Adaptin_N	26	578	3.30E-140
PF02883.23	Alpha_adaptinC2	755	869	6.10E-31

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0030121	AP-1 adaptor complex	Cellular Component
GO:0006886	intracellular protein transport	Biological Process
GO:0035615	clathrin adaptor activity	Molecular Function
GO:0016192	vesicle-mediated transport	Biological Process
GO:0007034	vacuolar transport	Biological Process

InterPro

InterPro term	Description
IPR008153	Gamma-adaptin ear (GAE) domain
IPR002553	Clathrin/coatomer adaptor, adaptin-like, N-terminal
IPR013041	Clathrin adaptor, appendage, Ig-like subdomain superfamily
IPR008152	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain
IPR016024	Armadillo-type fold
IPR011989	Armadillo-like helical
IPR017107	Adaptor protein complex AP-1, gamma subunit

trEMBL

trEMBL term	Description
A0AAN9JYF5	_

SwissProt

SwissProt term	Description
AP1G2_ARATH	AP-1 complex subunit gamma-2

KEGG

KO	Description	Enzyme
K12391	AP-1 complex subunit gamma-1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G60070	Adaptor protein complex AP-1, gamma subunit
Medicago sativa L.	MsG0580025815.01.T01	_
Oryza sativa L.	LOC_Os06g07090.1	AP-1 complex subunit gamma-1, putative, expressed
Cucumis sativus L.	Csa000894	_
Glycyrrhiza uralensis Fisch.	Glyur000407s00023562.1	_
Codonopsis lanceolata	Cl_chr01_20730T	_
Arachis hypogaea L.	AH15G10770.1	AP-1 complex subunit gamma-2 like

Expression pattern