Gene detail

Detail information of Am04G012160.1 Annotation

Gene ID	Annotation
Am04G012160.1	KNOTTED1-like homeobox gene 6

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G012160.1	mRNA	Chr04	38201443	38209527	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM04G012160.1
CAGAATTAGCGAAGGACTAAAAATTCCCTCGCTAATTCTCTCGCTAATAAGCTTTTGTTTTTGTATTGTGTCCTGTAAATTAGATGGGTATTTGCGAGCAAATATCTCTGATGCATTTATAACAATTTCCTCTATCTTCTAATCCAAATGAGAAAAGCAAGGTTGGTGTTTGTGTGATTTGGGGCTTTGAAAATGAAGGAGCCATGTTAAGGGGAGAGATTCACGATTTCGACATGGAAAGGTATAGGGAGAAGAAAACTTCATGGTTTTGAAGTTATGCTCTCCTAAAGGTTTCACCTTTTTGCAACAAAACTAGGGGAACAACTTCACGCTTTTGTAAAAAGAATGAGGAAAATGGCTTCAAGCTTTTGCGATGAAAATAAGGAGGATGGCTTCACCCTTTTAAACAACAGTGAGTTAAAGCTTGTGTTGGTGATGCCTTTGGAGAGAGCAGTGAAGTGTGAAAAGGCGATTTCAACTGAAACCTTCCCATTTCCATCTCAGCTAGGAACTAAAGCTCTTAGACGGTGAGGCAGTGGGGAAGGAGTTTTTACCGTGGCACCACGATGGGCGCCAATGTTCTTGTATATAAATTGGAGTGGTGCAACCCTTATGAATATAGTCTTACTAAGGGAGACCTCTCAAAATATATGAACCAAGAGTCTCTACAACAATGGTGAAATTGTGTGCTAGGGTATGAGAGGGGGCCTCCTTATATAGCTAAAGTGTAGGTCAATAATGGATACTGGACATCCTTTTAGGCCCAATTGTAATTAGCCCAATAGTGACTAGCCCTTTGGTGCTCTACATTACGTGGTACTATTGTCTGTTGCCTGTCATCAAGGTGATGGGTCACTCACTATTTCGATACGAGTCAATGGTCGGCTGCCACGTCCTCTTCGTTTGTCTTCTAGTCAAACACGTCTTGATCTGTGCATGGTTTGTATGACGACGCACACGGTACACACACTCCCTTTAGTAATGTCAGAGCGACACATACATCCCTTCCATCATTGTGAATCACAATATCCATTCCCCAATCCCCACCATCCATCCTTAGAATGATCCCGTTAATGTTAAATGAGGTACAGAATTATTAGAGCTCATTTGAATTCCAAGTTTGTTGCAATATGGAGGTTATATATATATATATATATATATATATATATATATATATATATATATAAGATCTACAGAGATAAATTAAGGGATCATAAGTTATAGCTAATTATAAATTAGAGATAAGTGAAGTACTACATTTGAACTTTAAATACAAGGACCGTGTGGATCAATTTTTAATCATCTTCTCTCCCCTCTCGCCTTTATATTTTGTGATGGAGAGAAGGAGAAGATCCAAACACTTCTTTAAAGGTTGATATAGATATTCAACGCATGGATATTTGTGCTAACTAATGCTCATACAAAGTCCATTTTGTTTCGGTATAAAAAAATCCATTTTGTTATTTAAAATTAGTTTGCATTCTTTTTTAAATTAATAATTTATATACAATGTGGGTGTATTAATGTTTTACACAACTGACCGATCATAAGTGAAATGTCATTAAAAATAAGTGACTGAACTCATAACCACCTTATTTGTTACTAATACTACGAATTAGGATTGATTATTAGTGTAAAACAATTTACACGGATGGTGCGTACCAATTAGAGACTTCTCATTTATTTGGTAATAAAATTCTTTGGCATTCTAATCTCCTATATTTGAACTACTACAGGTCCATGAATGTGGGATCGACAGTATACTGCCCACATCATCATGTTTAACATAATAATAAGAGGAAAACGAAGGAAACTTCTGTTCACACAGATTCTAACTTACACATTCGTGACACCCTTTAATGTATGATGAAGTCCTTGATCCAATGCTCCAGGCAGTTTGTGGTTAAATGAAGAGCTTTACCCACGTGTATACACAGCAATTATTTATCCTTAGAAGAAGTAGTTTTTGTATAGTCTTAATCATTAATTTTATCTTTAGAATTTTGTTTTGAATGGGTAATTAACTATTCAGTCTTAATTCTACCACACATAAAAACTTTTGGAAGCATATGCATGTTTTGACGAGTGACAATTCATACACAAAGACGGGGAGGGGGTGAGGCCTAGCATGTAGGTCTTTGTTGGCCTATACGACCCAAACCATCTTTCCATAATTCAGCAGCATCCCCCACTCATACTACCTGATATTTTATTTCTCAATAATTAATACAGAGTTAACTTAGCTGACAATTTTTATAAAAGTGTTTTAATTTAGTCTTTCGATTATATTAATTTAGTTGCTCTATTTTAAAAAAAAATGTTTTAAAATGAAATATTTATAAAAAATCAGGAACTAAGTTAATTTATTATTAATGTGAGGATCAAAATGTATTTTAAAATTTCAGAACTAAATTGACCAACAACTCAATAATATTAAATAATATTATTGTAGAATATAATTAAATAAGAAGAAAAGCCCAAAACTATTGAAAGAAAAAGGAGAATGAAAGACAGGCTCCAGGAAGAACGCGAGAAAGCGCTTGACCCTTGAAGAGGTAAGGTCCACTGTAGTCTTCCTATCCAGTTTTAAACTTCCTTGTTTCTTTTCAACTTCAAAGCCGAAAATTTAACCATTAAACCTCATTTTTATATTTTTATTATAACAATTACTTATTTAATCTGTACTTTGAAAAAGTTAAGGATCATTAAATTAATAAATTGTGATAAAATTAGATAATTTTCTTCATCAGCATCACCTTGTTTGTTCATATACAGTAATAGGATGATACGAGTGAGTGCGGCGAGTTGTTCATTTTTAGTAAATAAATAAATAAATAAGATAAAAAAAATAATAATAAGAAAAGGCTAGGGAATTATTCATTACTACCTGTATCTGTATTTCTACTACTGCGCATGTGTGTTTCTTATCTTTTTCATCTTGAAGAGTAGTGGGCAGTGGCTGTCTCTGGCAGCAGCAGAAGAAGTAAGAAAAACGCAGTC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03791.16	KNOX2	123	169	2.60E-25
PF03790.16	KNOX1	71	112	1.60E-23
PF05920.14	Homeobox_KN	247	286	1.10E-17
PF03789.16	ELK	207	228	1.70E-08
PF00046.32	Homeodomain	253	287	5.30E-07

Gene family

Gene family	Subfamily
Transcription Factors Family	HB-KNOX

Gene Ontology

GO term	Description	Category
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function

InterPro

InterPro term	Description
IPR005541	KNOX2
IPR005540	KNOX1
IPR009057	Homeobox-like domain superfamily
IPR017970	Homeobox, conserved site
IPR008422	Homeobox KN domain
IPR001356	Homeobox domain
IPR005539	ELK domain

trEMBL

trEMBL term	Description
R9R650	_

SwissProt

SwissProt term	Description
KNAT6_ARATH	Homeobox protein knotted-1-like 6

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G23380	KNOTTED1-like homeobox gene 6
Medicago sativa L.	MsG0580025740.01.T01	_
Oryza sativa L.	LOC_Os01g19694.1	Homeobox domain containing protein, expressed
Cucumis sativus L.	Csa011388	_
Glycyrrhiza uralensis Fisch.	Glyur002578s00032750.1	_
Codonopsis lanceolata	Cl_chr02_17160T	_
Arachis hypogaea L.	AH05G12840.1	Homeobox protein knotted-1-like 6 like

Expression pattern