Detail information of Am04G011640.1 Annotation
Gene IDAnnotation
Am04G011640.1 ubiquitin-specific protease 17
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am04G011640.1mRNAChr043491564134921266-

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF00443.32UCH4187193.20E-47
PF13423.9UCH_14196997.80E-16
PF01753.21zf-MYND921297.80E-08
Gene family
Gene familySubfamily
Ubiquitin FamilyUSP

Gene Ontology
GO termDescriptionCategory
GO:0016579protein deubiquitinationBiological Process
GO:0005829cytosolCellular Component
GO:0005634nucleusCellular Component
GO:0046872metal ion bindingMolecular Function
GO:0016020membraneCellular Component

InterPro
InterPro termDescription
IPR002893Zinc finger, MYND-type
IPR018200Ubiquitin specific protease, conserved site
IPR028889Ubiquitin specific protease domain
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR038765Papain-like cysteine peptidase superfamily

trEMBL
trEMBL termDescription
A0A8B8M2Z9 _

SwissProt
SwissProt termDescription
UBP17_ARATHUbiquitin carboxyl-terminal hydrolase 17

KEGG
KODescriptionEnzyme
K11855ubiquitin carboxyl-terminal hydrolase 36/42[EC: 3.4.19.12]

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT5G65450 ubiquitin-specific protease 17
Medicago sativa L.MsG0580025661.01.T01 _
Oryza sativa L.LOC_Os08g37350.1ubiquitin carboxyl-terminal hydrolase family protein, expressed
Cucumis sativus L.Csa002111 _
Glycyrrhiza uralensis Fisch.Glyur000749s00022603.1 _
Codonopsis lanceolataCl_chr02_64670T _
Arachis hypogaea L.AH05G38180.1Ubiquitin carboxyl-terminal hydrolase 17 like

Expression pattern