Gene detail

Detail information of Am04G011410.1 Annotation

Gene ID	Annotation
Am04G011410.1	RNA-binding KH domain-containing protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G011410.1	mRNA	Chr04	33916438	33922179	-

Sequences

CDS:

>Am04G011410.1
ATGCAAGACCCCACTTCCGCCGCCACCGAAACCGATCACCACCATCATCCACCGCCGTCATCAACCAAACGGACCAACAAAACAAAGAAACCCGTTTTCAAAGTTCTACCAGGTCAGATCGCGTTCCGTTTAGTGTGCCACTCGTCAATCGTAGGCGGTTTGATCGGAAGTTCGGGGTCAATTGTTTCACAGCTCCGGCGAGAAACTGGTTGCAAAATCCACTGTGAGGATTTCGTACCCGGCACCGAGGATCGGGTAATTTTGGTAATTGGGTCACTTTCGCCACGAAAAGGCATTGCATTGGGTGATGGGGAAATGGAAGTTTCGAATGCCCAAGAAGCTGTTGTTAGGGTTTTTGAGAGGATTTGGGAACTTGAGTCTGAGAAAGGGGGTAACTTTAACAGAGAAGTTTTTGGTAAATTGTTAGCACATACTTCTCAGGTTGGTGCTGTTGTGGGGAAAGGAGGGAAGAATGTAAGCAATATGAGGAACAATAGTGGTGCCAAAATTAGGGTTTGTGCTCCTCCACATTGTGCAGCTAAAGATGAGGAATTAGTTCTAATAACTGGTGAAAGTTTGGCTGTAAAGAAAGCACTGATTCTTGCTTCTCATTGTCTTCAAGATTGTCCACCGAATGGCAAAGTTCCAGTCTCTTCAAGCACACCAACTGTTAGCTCTTCTGATAGATCAACCTATGATCCACCTGAGGAACTTTTTCCTCACCTTAGTTCATGGTTACCTTCAATGGAAGGTTTATCTATAAACGTTGCTTCAAAGCAGACAACAAACTCTAACGGAAACTCTAATGGTACTCACAGAGTTGTTTTCAGACTCCTTTGCTCTAATAATGTTGCTGGGAGTGTGATTGGCAAAAAAGGGGCTATAATCAGAGTGTTAGAAAGTAAAACAGGTGCTTCTATTATCTTTGCAGCTCCCTTAAGTAACTTTGAAGAGCGCATTGTCACCATTTCTGCTATGGAGAATGTTGAATCTAGTCATTCTCCTGCACAAGATGCTGTTGTTCTCGTCTTTGCTAGAATCATTGAAGATCACATTGGAAAGGGCTTTCTCCCAGCCTCTAGTGTGGAATCACCTGTAACTGCAAGGCTTTTAGTTGTATCGAGTACAGTAAATTGCTTGACTGGCAATGAAGGCCAGGTGATTTCAGAATTGAGAGAAGTGACAGGGGCTGATATACACATACTGCATGGAGAGCCAGTTCCAAATGATGCTTCAGATAATGATGTGGTAGTCCAGATCACTGGTGGGTACCGATGTGTACAACATGCTCTGTATAAAATAACTAGTAGAATCAGGGACAATCTTTTGAGCAATGAGGTACCTGTTGAAACAAGAGCGAAATCCGGTTTTAAAGGGAATAAGGACACTGTAAAGGGTAAGCCCTTTCCCCACAGAAAATCTGCTTTTCCTTCTAGGAGGTTTCCGCCGCAGAATGCAGGGGTGAATGCTGAGACAGTCAGAGAAAATGGTGGATTACATACAAGTTTAAGTGAGAATTTGGAACATGGCAGAGGAAATATGCTCGCCACTGTGACAAATACTACTGTGGAGATTGTAGTTTCTGAACATGTCTTTGGTTCTGTTTATGGCGAAGATGGCGGCAATGTGGATCGAATCAGACAGATTTCAGGGGCAAGTGTTACAGTTTATGATCCAAGCGTAGGAACAAGTGGAGGGAAGGTTGTAATATCTGGGACACCTGATCAAACCTTTGCAGCTCAGAGCTTGCTTCAAGCGTTCATAGCAAGCTGA

Protein:

Promoter(3k):

>AM04G011410.1
TTAAAGGGTGAAGGTGTGCAAGTAGGCATTCCAAATTTAGTTAGAATGTCCAAAACATGCTTCCATTGGCATGCATATAAACAATTTTTGGGGAGCCATGGACCAGCAACAAAATATTTTAATTCTCCTAGATCTTCTTGTGAAAACATTTATCAAGGTATTGTTTGAAATTGGTGCATGAACTTGTATCACTCTCGACAACAAGATCATTAACACATGCTAATACAACAATGAAAACTGAACCACGGGAATATCTAAATAAGTTATGGTCTGCTTCCCACTCCTAACAACTTTTTGAACCAATTCCTTATGGAAATTGCTTGTATCTCCCTCCATTTTTGCTTCTTAGTGGGTGATCTTCACTAGTTTAGAATCTAGAGTACTCTTGGAAACAATAGTTCCCTTCACCCTAAAACTCACTTGGAATTTGATAAAAACAACAAAAAGAAACAACAAGTTTCAACATTATGACAATGTTTCCTTTCTGCTACGTCATTTTGTTGAGTTGAAACATAACACAGAATCTAAACAACTGTAACAGAAAAAAGCCATAGTAATAGAATTGCTTGAATGGTTTACAAGCCGTCATGAAACCCCTTTTATCTAAGCAGAAATAGAAGCTTCCAAACCTTGGCTCAATAGTAGGACTTGGTCTCTCAACATTAATTTTGCATGTGTTTTCAGGGTTTGCTCAATCCTAAATTTCTCAAAATTTGAGTGTTTTATCGATCGCCATCAGATATATGGGTCACTGCTATTTAATTCATCACTTACATATTCATTTTCAATGTTATCATTAACACCATCATCAATACTATTTACTTCATCATTAGGGTTTATGGTCTTTTTCTGATGGGTTTTGGCTTTTATATTCACCTATTTGTAGGGTGGCATCATCCACACCAAACCCATCATCTAGTCCCAAAGATATGTCATCTACACCATCATCAAATTTAATGCCTTTAGACTCATCCTCACTACTATCCTCATAGTCGGAATCAAATTCTTTATTATTGTCTTCTTGCACATAATCAATAACAGAACACCAACAACTTTAGGGGAATCAACTAAACCAAGCTTTCATCCACATCATGCTCTACATATGTGTTAATAACAAATTGTTTGCTCTCACCATAATTTCCAACCGCTGTTGCATCTGTATTTACCCTAATAAGCATGAACCTCACATCTTCATCCATCTTCCACCACAGCCTATATCCATGTTCTATACCTAAGTCCTTCAACAATCCAACAGCTTCAAAATAACTCCACTTATCAGTGTCAATACCCTCAATCACTGTTTCATGCCTCCTTTGTAACATACAACCCAATCCCTCACAAAATTACCTCTATGGTGAAAGCAAATAGTAAAAGCCATCTATGTACATTCCCAAAAACTAATAAATAATTACGAAAGAAAACTAATATTTGACCAGGCACAAAAAACAGAACAATTTTGGTCCCTACAACATAAATCCACATGCATTAAAACTGAAAAGAAAACAAACATTTGACTAGACACAAAAAATAGTACAGTTTTGGTCCCCACAACATAAACTCACATGTATTCAACAACAAAGAAATCAAATATTTGACTAGGCATTGTTTTTTATGGTCCCCATAAGGCCAAAACAAAAATTCACATGTATACAAAAGCACAACAAACAACAAACATAATCAAGTGCATAAAAAGCATCGATCTACATCACAAAGTCATGAAAAGTTTCTTTTCAAATATTCTCACTTGATTGACTGAAATTAAGAAACCAAATTATTTCATTTCAAATTTATTTAAAAGTAAATCATCAATATCGTCTCTAAGCTTACACCTCATCTTTTTCTTAGCCGCTAAAACATATGAAAATAGTAAGTAGTCCATAACAGTTTGTGACATCAATCAAATTGAATATTAAAGCTTTGTAAGAAGTCAAGGAAAATAATAATAATGAGACACGTTTTTTAAAATTTCAAAGACAGGTTTAATATATTTCACGGGTTATAAAGACTACTTATTATTTTATATACTTTAGAGATCAAGTAGAACATGCTGTGTAAGATCCAGAACTAAAGTGAGAATTTAATCTTTATTTAATTGTCAAAACTAAAAATACAGAGGATTCTAAATGCAAAATTTAAAACTCAGGAAGGTCAAAAAAATCATATAGAAAAGCAATTGAAGATCTCAACTTTGAGGGGGTGCACCTCTTGAATTGTGAGTAGATTCGCCATGATGAATATGTCAGCTCTACATGTTTCTGACAGCACTTTGCTGCCACGTTAACATCTCAGTTAAAAATTGGATGATAAATTAACGGTTGAACCAAAATTATGCATTTTAAAAAATAGGGGGACATAAAAACTAGAAAAAAAATAGAGGGGCAAAAATGTGGATAGAAGATAATTGGGGACCAAAACAAAATACTAAATTAACATTTTTACCATTTTTGACCTAACATTAAACATCCTTATACAAGGCTTTGAAAGTCATACCACAAGATTGGACTATATGCGTTGAACTTAAAAAAACTCCGTCACACCGTCAGTCAATTAAAGACTAGTAAGACAGGTTGACAATTTTGTATCATCCTATAGTATTAGTCTTCATCCACTGGTAACATAACAATATAGGATGAACCAAATAAACACATTCGATTATATTCTTACTTTTAACCCACTACAGCCCTTAATAGTAAAACATTCCGTTTAAAAGAGAATTACAGCGTACAGTAACACAACAATACTGTTCCATTACCAAACAGACATTAACCTCAGTATCAAGTTGTCGACTATAATAAAGCCAAAAACGCAGACAATAAAAAAAGGTCCACGACCTTCAAATCCGCTTTCCTCGTTCCTTCCATTTCCATTTCATTTCATTTCCTTCCCTGTCACTATTTCCTTTCCTTTGCCAATCAATCTCTCCTTTTCAGCCACCGCAATGAATAAACCTTAACGGCGTTGTTAATCCCACTTTCGTAGTCAAAACCCTTTCCTCACACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00013.32	KH_1	43	92	1.70E-51
PF00013.32	KH_1	142	200	1.70E-51
PF00013.32	KH_1	276	325	1.70E-51
PF00013.32	KH_1	368	435	1.70E-51
PF00013.32	KH_1	522	585	1.70E-51

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003723	RNA binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0010468	regulation of gene expression	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR036612	K Homology domain, type 1 superfamily
IPR004088	K Homology domain, type 1
IPR004087	K Homology domain

trEMBL

trEMBL term	Description
A0A1S2YZY8	_

SwissProt

SwissProt term	Description
RCF3_ARATH	RNA-binding KH domain-containing protein RCF3

KEGG

KO	Description	Enzyme
K21444	poly(rC)-binding protein 3/4

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G22600	RNA-binding KH domain-containing protein
Medicago sativa L.	MsG0580025620.01.T02	_
Oryza sativa L.	LOC_Os09g32300.1	KH domain-containing protein, putative, expressed
Cucumis sativus L.	Csa003273	_
Glycyrrhiza uralensis Fisch.	Glyur000272s00017871.1	_
Codonopsis lanceolata	Cl_chr05_28570T	_
Arachis hypogaea L.	AH05G38400.1	Uncharacterized protein like

Expression pattern