Detail information of Am04G011300.1 Annotation
Gene IDAnnotation
Am04G011300.1 Rhamnogalacturonate lyase family protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am04G011300.1mRNAChr043353474933539815+

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF06045.14Rhamnogal_lyase412307.10E-64
PF14683.9CBM-like4706592.90E-51
PF14686.9fn3_33844567.70E-24
Gene family
Gene familySubfamily
Carbohydrate-Active enzymes FamilyPL4

Gene Ontology
GO termDescriptionCategory
GO:0071555cell wall organizationBiological Process
GO:0005576extracellular regionCellular Component
GO:0030246carbohydrate bindingMolecular Function
GO:0016020membraneCellular Component
GO:0005975carbohydrate metabolic processBiological Process

InterPro
InterPro termDescription
IPR010325Rhamnogalacturonate lyase
IPR029411Rhamnogalacturonan lyase, domain III
IPR029413Rhamnogalacturonan lyase, domain II
IPR014718Glycoside hydrolase-type carbohydrate-binding
IPR008979Galactose-binding-like domain superfamily
IPR011013Galactose mutarotase-like domain superfamily
IPR013784Carbohydrate-binding-like fold

trEMBL
trEMBL termDescription
G7KGH4 _

SwissProt
SwissProt termDescription
RHIE_DICD3Rhamnogalacturonate lyase

KEGG
KODescriptionEnzyme
K18195rhamnogalacturonan endolyase[EC: 4.2.2.23]

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT2G22620 Rhamnogalacturonate lyase family protein
Medicago sativa L.MsG0580025594.01.T01 _
Oryza sativa L.LOC_Os08g44020.2rhamnogalacturonate lyase, putative, expressed
Cucumis sativus L.Csa000416 _
Glycyrrhiza uralensis Fisch.Glyur000425s00021399.1 _
Codonopsis lanceolataCl_chr01_44550T _
Arachis hypogaea L.AH03G39710.1Rhamnogalacturonate lyase like

Expression pattern