Gene detail

Detail information of Am04G011250.1 Annotation

Gene ID	Annotation
Am04G011250.1	AGAMOUS-like 16

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G011250.1	mRNA	Chr04	33300526	33327986	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM04G011250.1
AATTAACTTTTAGGCCTAACAAGGTGAATTTGAAAAATGTTAAATTGAATTTATGTCTGCCATCCCAATAATTTTACACGTAATTGTAGTGTCAAATAGGCAAATACTAGTGAATTTGACGGGCAGAAATTCAAGCCCAGTACGAAAGTTAATTTCCCCGCAGGTCCATCTCTAGCAGGATCGGGTTTTGCCCTTCCCATTTCCGTCCAAACGGGCCAAATTTCCCCGCAGGTCCTCAATTCTGTATTATTTATAGAAAAATTCAAAAAAATTTATTTATAATATTTAATATAATAAATTCATAATTATTATAGAATGATAAAATAAAGTTAAAAACATTAAAATAGAATTTTCTATTGAAAAGAGATCAAAATTTAAAAAAACAAAACAAGATATATGAAACAAAATGAACAAGTATATGTGCATAAAATAAGATAAAAACTAATACTTAATGTTTAGTCGATCGAGTTCGGAGCGGGTTCGGAGCGGGGCATGTATCGACATCTCCAAACCCGCCATGTCCCCAGTCAAAATGGGTTTTCCCTGTCCAACTCAGGTCGCGGTTGGGTGGGTACTCGTGGGTTAGGTTTTATTGTCATCCCTATTTCCTGATACGCTCATTTCAACCATTTCTAAATAACTTTTAGACTCCTTCCCCAATTAGTTCTCTCTCACATTATTCAAACAAGCATGATAATTGGGTTTAGGGTTTTCAATCACCGCTCATTCAATCCCTCTTGCTTTTCATCTCTATTGTCATCCATGGTTGGCATGGACCCTATGACATGGTCTTCCACGCCCCTTCTGCACCAATATGATCGGATATCTGAAATGGTTTTTCTTTCTATATTTTTCCATGATATTTCATGATTCTTTTAACTTCGATTATTTATTTTTCCTCTTCTTCTCTTTTATGTATCTAATTATTTTCTATCACTTCAACGACTAAACCCATGGTGTCATTTTCTCATCTCCCCACCCTTCAGAATGCACTGCAGAGAATACCACTGACAATCGTAGGTTATATCGCAACTGAACTTTACGGAGGCGTACTCACAGAACTTTTATGATCGCACCATGTTCTAAAATACTTTCTACACATTAATTTCTTTAATATTTGTTTTGGCTTTATGTTCTTAGTCCTACGCCTCACTTTCTCAATTTTAATTTTTTTGTGTGTTAGTGCTTGTTTACATCATATCCAATGGGAAATAATAACTAACCCCTCTTTGTCTCCTCTTCTTGTTTCAAGTCTATGGCTTTTAATTGCAATGACGAGATCTGTTGGGTCATTTTTTGCAACGATGAGATTTGCAGGGTTGAGGGCTTCTATTTCGAGCCTTATGAAGACGATCTCGAAATGGAGTATCAGTGATGGTATTTGAGTGACTTCAAAGTTGACGAACTTACAATTGTCTTCCTCCTCTATTCATCTTGGACACTACATTAATTCTCTGTTCATAAGGTAAAACCTCTCAACTTCACTCGCGCTTCCATTACGTTTTATTTCTGTGTTGTGAAAAAAGCTTTGATACCACTTTGAGTTTTCAATTTAGTGGGAGGAATTCAAAACAATTTTTTATGCTTTGAAAAATAATAATATTAAAAAAGAAAGTCCAATTTTGATGTGTTTATCATTTGCGAATATTTGAACATTATGATATTTTTCAATGCTTGCAATTGGTAGTAGGATTAGTGTGGTAAGCCAACACCACCAAGTTGACCATTCCTCATATTTCTGCCAAAATAATTCCAAGAAGTAGGATTGGCATGAAAAACGTTCTAAGACATGAAGTTGAATATTGTTGTATTTTGGTTTCGTTTTATTATAGATGGAGGGGATTAGGAATTGAACACATATCGATCATTGACACGGCTAGTATCTATACGTATATTCTCTTGTAGATTCCATCGGTGTCAAGCGATCATTTAGATTCTCAATTGCTAATCCTCTCTATCTCTTGATAGATAATAAAAACAAGCCAAAATACAATAGTATATAAATTCATGTTGTAGAACTTCTCCACACCAAATCATACTTCTCGGAATTAGTTTGAAAGTAGAACGAAAAAATATCAACTTGGTGGTGTCGAGCTAAGGGATATCGAATGAGTGCATCAAATGAGTGCAAGCAGGAGGTCCCGGATTCAAACCCGGGAAACTAACATCCCCCCCCCCCCCCCCCCACACACACACACACACTAACATTGCCTATAAAAAAACTTGGTGGTGTCGAGAGCAAACAAATCTCGGGAGTCCGTGTTATATTTAAAAATCAGAACTAGACGTTTATCATACTGTTATAGAATTTTAGAAGGATCTTAGGGAGAAGGAGAAAAATAGTATAGGAAACTTATGAAATATTTTTGTAATGGTTTCCCCTTCTACGATCTCAAAGATACTCTCCTCTTAAAATTCTACCTCAACATGATAAATGCTAAATTAGTGTTCTATATTAAAATTTTAATCGAATAATTATGCACACCAGGCAATGTGTTTTGTATTTGAAACGTGTCAGAGAGTAATACGGCTGACGGCGCCATAAAAATTCTCAAACTCAATAAAGTATAGTATTAGTATACTTCTAACTAGCTCCTTGAATCGAATACTTTACTGTAGAAAGTACACTACATTCATTCATCACGACTCACGAGTCTCAGCAGTGATCTTAATATTTTATTTAAATCAACATTGATTATCGATCTACATCTACCTCTACCCCAAGTTTCTTTCTATATGCTTTTCTACATATAAAGCTCTCTTGCGTTTTACAAGATATGTAGAAAATGGAAAGACAGCACCCACCACTCTTCTTCCTAGCTGCACCATCACTGACTCATCTTTAATATATATCTATCTTCCAAGTAAGAATTCATTGTTAATTAAACGCAGATATATAGAGATTTAATCTGAAGATTGTGTTTTTTTGTTTAATTTCTTTTTTCACTGAAAGAATATTTATATGTTTCAGAAACCCTAAAAGAATAAAGGTGAAAAAGA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00319.21	SRF-TF	10	57	1.10E-24
PF01486.20	K-box	60	140	4.50E-22

Gene family

Gene family	Subfamily
Transcription Factors Family	Others

Gene Ontology

GO term	Description	Category
GO:0000987	cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0019252	starch biosynthetic process	Biological Process
GO:0048316	seed development	Biological Process
GO:0043068	positive regulation of programmed cell death	Biological Process

InterPro

InterPro term	Description
IPR036879	Transcription factor, MADS-box superfamily
IPR002100	Transcription factor, MADS-box
IPR002487	Transcription factor, K-box
IPR033896	MADS MEF2-like

trEMBL

trEMBL term	Description
A9YWS1	_

SwissProt

SwissProt term	Description
MAD27_ORYSJ	MADS-box transcription factor 27

KEGG

KO	Description	Enzyme
K09264	MADS-box transcription factor, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G57230	AGAMOUS-like 16
Medicago sativa L.	MsG0580025590.01.T01	_
Oryza sativa L.	LOC_Os02g36924.1	OsMADS27 - MADS-box family gene with MIKCc type-box, expressed
Cucumis sativus L.	Csa012111	_
Glycyrrhiza uralensis Fisch.	Glyur000126s00013674.1	_
Codonopsis lanceolata	Cl_chr03_30530T	_
Arachis hypogaea L.	AH05G38600.2	Agamous-like MADS-box protein AGL21 like

Expression pattern