Gene detail

Detail information of Am04G011230.1 Annotation

Gene ID	Annotation
Am04G011230.1	AGAMOUS-like 21

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G011230.1	mRNA	Chr04	33280416	33288932	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM04G011230.1
CCTTGATAGGTTGCCTTTACCAAAAGAAGAAGATGAACTCTATAGAAACTGATGCTTCTGATAAATAATACTGGGATGCAGTATTATGGAGGCAAACTGATGATATTATTCTTAGATATACGTCAGGAACTTTTAAAGGTTCAGAATTAAACTATGATATTAATGAAAATGAAGTTTTAGCCATTATTAGAACAATAGAATCTTTTAAAATATGGCTAGCTAGAAAAGATTTTGTTATTAAAACTGATAAAACTCAGGTGAAAGTCTTTTTAGAAAATAAAATAAATGATAACATTGCTAATCGAAGAAGAATAAGATGGCAGATGAAAGTTAGTTCCTTTACTTTTAAAGTAGTATATATAAAAGGAGCTAACAACTGTTTTGCTGATCATTTACGGAATGAAGACAGGGTTTATATAGACCCTTACAAACATATACTATGGTAAAAGGTAACTAGGGTTACATTACTTTATCTTGATGGAATCTGCTTTCTTCTTTCACGCTTTCCTTGTCGGCCATGATACCTTTTGTCATAATCTGCTTTTTCCACGTTTTCTTGTCGGCCATGACACCTTTTGTCTTAATCTGCTTTTTCCACGTTATCTTGTCGGCCATTTCATTTTATATTTTTTCTCTACAGTGGCTACACTTATGATCTCCATTATTCTTCATTATTTTGCAAAATTGCTGATGTGTCCCTTTCTGTCCTTGGAACGTATTCTTTTCAATTTTTTGTGCGAATAATTGTAGGGTTCTTAATGTTCCTGGCTGTTGATTCTTATCTTTCTTACAGATTACTATAGCCTTGCCGGTCATTGAATAGCTCCAAAATTTTCCTTGATCATAGATTTATTTTATTACCATAAGGAGTACATGGAAACCTAAGGCTCTTCTCTTGGTAATCCAGTCTTCGTCAATTGTCGGTGCCTCTTCCTTGGTTGTATATTCTTGTTCCCCTATCTCTTCATCATTAAGGGTACCAATTTTTACAAAATATACTGCTTCACCTTCTTGGTCTGGACTTGCAGTATAAATCTTGACAAAGATTGTTCTCTGAGGATTAACTCCCTTTATATATCCTTTTATTCCCGTAACAATATGTTCTGGAAAATGCTTCAACTTGGATAAATCATTTTTTGGGTCAATATAGATTGAATCAATAAATACAAATCTTAAAAGATTAGTAAGAAGAGTAATATCTTCCCAATCATGTAAGATTATCATAACTCTTGGATAAATTCCTTTATACTCAACAATATAATTATCGAGGTTTTTTGGATTTACTTGGTATATAAAATTGACCAGATTTTGATAAATTTCTTTAAATTTATCTACTGGTTCTCTGGATGGTGAATCAACCAACTTGTCTTTAAAAGTGCTAACAAATTTTAATTTTCAAGGTTCTCCTTTTTCTTTTTCCAAAAAATTGGAACTTGGTTTTTCGATTGATTTTCCTTTTAGAGATACTGGGTATTAATGAATATCAATTACCTTAAGTATTTCCATCTTGGTTTTCATGAAGTACTCAAAAAAGTTTTCCATTTGAGTATCAATTTTAACAAAATATTCATCAATTTTGGAAGCCATTAGAATAATAAAAGGCATATTACTCATAAGGTAGATATTGTTCTAATTATAAAAGATTGTGAGTTACCTCTATCAATAGAAGTTGAAGATAGTGTTAGCACTGAATTTTTATTAGGATTGGATTTTTTAAGTCATTTTGAAGATTATACTATAAAAGATAAATATATTGAAATTATATATAATGGAAAAGCAATTACCATTAGTCGAGTGTGAGAAGATAAATCAAAAGAAGAATTTAGTAGTAATCGAGATTATTTACGAATGAGCTAAATAAAATTTCTAGGTAAGAACCCCATAAAATGTTTAATAGATACAGGAGCATGTACTAGTCGTATAACTATAGATTTAGTTCAAGGGTTACCTATTAAAGAACTAGACAATAAATATTATTATTTAGATTATTATAATATTAAAAGACATATTACTCATAAGGTAGATATTGTTCTAATTATAAAAGATTGTGAGTTACATCTATCAATTTTTGCCAAACACCCCTCGTTGCCCAAATTTTAACAGGTACGGCACTATGTTGCCGAACCGATACAATAACCTAGTGCCGTAACATATTCTCCACTTCTATTAGCCTTTTCTAAAAAGGTGAAATTCAATACTCGGAAAGAAAACGCAGTCATTGGAAATATAAGTATGAATTCTGATATATTTATAATGATATCATGTCATGTAAAAGGTCATGTAACTAGAGGTCACTAAAAGGTCAATTCATTTGGCAGGATGACCAAGTGAATAGCCATGTAACAATTTCAGGAATCGACGCTTCTTACACATCTTACACATTACCATGTGTAAAAACCGAACTTGTTCGGTGCTCTTGAGCCAAACTTGTTCGGTGCTCTTGTACTGAACCTATTCGGTAATTTGGTATCGTACCCGTCAAAAACTGTGTAGCGAGGTTTGGAAGCGTATTCCACGTGAGGGTAAAATTGAAATATTTGAGGTTTGGGGGTGTGTGGTGAGTAGGAGAGGGTTGGGAAAAGCATGGGCCCAACCCAATGAGAGATATTTACCCATTAATTAACATAAAAAGGCCTAATTGTTTGGCCCATTGGGCCTATGCATAATATAGACATGTTTGATAGGAGGCCTACTAACGTATCCTACCTTCCAACCTCCTCTTATTTATGGGCAACATGTTTATTTCAACTATCTATCTATCTATCTATCTCCAACTAACTCTAACTAAGGTTGTTACCCATCTTTATCATAGAGAATGAGTACTTTAACTCAATATTTTACTTGTCTTATTTCTATATAAATTGAACCATTTTAGTTTGCTGTCTCATGGCCGAGCCATTTTAGTTTGTTGTCTCATTGAATGGGTCACAATTTGGTTAAACATGGGTCACAATTTGGTTAAACATATTAAAAATGTGATGATTCTCTCTTGTGATCAGC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01486.20	K-box	22	110	6.50E-25

Gene family

Gene family	Subfamily
Epigenetic Regulators	FLCP15

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0000987	cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0045893	positive regulation of DNA-templated transcription	Biological Process
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0046983	protein dimerization activity	Molecular Function

InterPro

InterPro term	Description
IPR002487	Transcription factor, K-box

trEMBL

trEMBL term	Description
G7KGG1	_

SwissProt

SwissProt term	Description
MAD27_ORYSJ	MADS-box transcription factor 27

KEGG

KO	Description	Enzyme
K09264	MADS-box transcription factor, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G37940	AGAMOUS-like 21
Medicago sativa L.	MsG0580025590.01.T04	_
Oryza sativa L.	LOC_Os02g36924.1	OsMADS27 - MADS-box family gene with MIKCc type-box, expressed
Cucumis sativus L.	Csa002119	_
Glycyrrhiza uralensis Fisch.	Glyur000126s00013674.1	_
Codonopsis lanceolata	Cl_chr03_30530T	_
Arachis hypogaea L.	AH05G38600.2	Agamous-like MADS-box protein AGL21 like

Expression pattern