Gene detail

Detail information of Am04G010400.1 Annotation

Gene ID	Annotation
Am04G010400.1	homeobox-7

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G010400.1	mRNA	Chr04	30117554	30123132	+

Sequences

CDS:

>Am04G010400.1
ATGTATGGGGATTGTCAAGTTATGTCAACAATGGGAGGGAACGTAGTAGTAAACTCAGACACTCTCTTCTCCTCTCCGATCCAGAACCCTAACTTCAACTTCATGTCAACCATGCCTTTTCAACCTTTTCCTTCCATGAAAGAAGAAGATGGAATGTTGGGAGGTGGGAAGGATGAGATTATGGAAAGTGGGTCTGGTAGTGAACAAGTTGAAGACAAGTCAGGGAATGAACAAGAGAGTAGTGAACAACCTGCAAAGAAGAAACGTTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTATGTTCAAGGAATGTCCACACCCAGATGATAAGCAGAGGCTAAGGCTGAGCCATGAGTTAGGTTTAAAACCACGGCAAGTCAAGTTCTGGTTTCAGAATCGTCGAACCCAGATGAAGGCACAACAAGATCGTGCAGATAATGTGATACTTAGAGCAGAGAATGAGAGTTTAAAGCATGAGAACTATCGGCTACAAGCAGCTCTGCGTAATATCATGTGTCCCAATTGTGGTGGGCCATGCATAATGGGCCCTGATTTGGGCTTGGATGATCACCAACTTCGACTTGAAAATGTCCGCTTAAGAGAAGAGTTAGAACGTGTATGTTGTATCACTTCAAGATATACTGGGCGCACAATCCAAACAATGGCAGCACCTCCAACTCTTATGCCACCATCATTGGATTTAGACATGAACATATACCCAAGGCATTTTGGTGATCAAATTGCACCTTGCACTGAAATGATTCCTGTGCCAATGTTGCCATGTGAACCTTCACCTTTTCCAGAAGGTAGTGGTGGTCTTCTCTTAATGGAAGATGAGAAATCACTTGCTATGGAACTTGCTGCTTCTTCTATGGTTGAACTTGTTAAAATGTGTCACACAAATGAACCACTTTGGATTCGTAACAATGAGAATGAAAGGGAAGTGCTTAATTTTGAAGAGCATGCGAGGATGTTTTCATGGCCTTTGAATCTTAAGCATGGAAGTGAACTTAGGACTGAAGCTACACGTAACACTTCTGTTGTTATAATGAATAGTGTCACTCTTGTTGATGCTTTTCTTGATGCTCAAAAATGGATGGAATTGTTTCCAACAATAGTTGGTAGAGCAAAAACTGTCCAAATTATATCTTCTGGTGCTTCTGGTCATGCAAGTGGGACTCTTCAGCTGATGTATGCAGAATTCCAAGTTGTTTCTCCTTTGGTCTCTACTCGTGAGACTCATTTTCTTAGATACTGTCAACAAAATGCTGAGGAGGGAACATGGGCCATTGTTGATTTTCCTATTGATAGCTTTCAGCAAAATTTCAATCATTCTTATCCTAGATACTACAGAAGGTCCTCTGGCTGTGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGATGAGAAACCTGTTCATCAGATATTGTGTAAGTATGTGTATAGTGGAATGGCATTTGGAGCACAGCGTTGGTTAGGTGTCTTGCAGAGGCAATGTGAAAGGGTAGCTAGTCTCATGGCCAGAAACATCTCAGATCTTGGAGTGGTACCTTCACCAGAAGCGCGGAAGAATTTGATGAAACTAGCACAAAGAATGATAAAAACGTTTAGTCTGAATATGAGCACTTTTGGTGGTCAATCATGGACGGCCATTTCAGATTCCCCTGAAGACACAGTTAGAATCACAACTAGGAAAATCACAGAACCTGGCCAGCCTAATGGAGTTATTCTTGCAGCTGTTTCAACCACTTGGCTTCCTTATTCCCATACTAAGGTCTTTGATCTTCTCAGGGACGAACGCCACAGATCTCAGATGGATGCTCTTTCTAATGGGAACTCTTTAAATGAAGTGGCTCATATTGCTAATGGCTCTCATCCAGGAAATTGCATTTCCCTTCTTCGCATAAATGTAGCAAGTAACTCATCTCAGAACGTAGAACTAATGCTACAAGAGAGTTGCACAGATCAATCTGGAAGCTTAGTAGTCTACGCAACAATAGATGTAGATTCAATCCAGCTAGCAATGAATGGAGAAGACCCATCATGCATTTCACTTCTACCACAAGGGTTCATGATACTACCAATGGTTACATCAAACAACAACACATCATGTGTTGAAAATTCATCTGAAGCTATCACAGGAACACCATCTACAACTACTAGTGCTAACAACAACTCAGGTTGTCTTCTCATCATGGGTATGCAAGTTCTTGCAAGCACAATCCCTTCTGCAAAACTCAACCTTTCAAGTGTGACAGCAATCAATAACCACCTTTGCAATACCCTTCACCAAATTGAATCTACTCTTTGTAGTAGCACTGCTAACAATTTCCTTGTTGGGTCTTGCAATGAACCTACCACTAGTGCATCCACCAAGCAGTGA

Protein:

Promoter(3k):

>AM04G010400.1
TCTCTCCCAAGATGAAATTGCAAAATCTCCCCAAAAGAAACCACGGTCAAATATGGCGCGTGTCTTTCACCCTCCGACAAAATTTGCAATCGCTTTGGTTGTGAATATATGAAAAGAAACAATAAGTATAAGGAAAATCAATGCCTATCAAATTAATAAATGAAGAAAAAATTAGGAGAAAAGAATAAAACACCCTTACAACTTATTTGGTTGAATAGAAAAATGGAAAATTGATATTATTTTTTACTAAAAATTAAATACTAAATAAGAGAAGGTTTAGATATAACTTGATATTAATTTTGTAGCACCAATTTTTATTACAAAGACAAGACATATACGAGAACATACATACGTGAATATCCCAAGTAGGTAGTTCAGTTTAATTTGCGAGCTAAGGGATATCGAAGGAATGTACCAAAAAGAGTGCAAGAAGGAGGTCCCGGGTTCAAACCCCAGAAACTAACATTCCCCCACCCCCACTAACATTGCTTATCCAAAAAAAACATACATACGTGAATAAACACAAAATATTGAACCATTCAAGGTAGAATTTTTGACGTCAGCAAAAAATGATCCAGTTGATAAGGATTTGACTCATATCTTTAAAGACGTGGGTTTAAATTCCACTTCCAGTGTGACGACGATAACGTTAGTAAGTATTTTTAAAACTTTAATTCTTTCTCAAAATCCTTGCTAAGCCTCCAAATTGTCATCATAATAAAAGAGAGAATTTCATAGGATTGGTCATAATTCAATTTGAAAAAAGGAATGCTTATAGTCACCCCAAGTGTTTTGTGTAGTGTTTCGTGCATCATCTTTAATATAATGTAACATTATGCTTATTGGAAATGCGGGACTTTCCAAAATTTACATCACAAGTAGTGTGTGCACCCACCCGTGCGTTCGCACAGGGCAACAACTTCAGTTAATGTAAAATTCATGCCTTGTTAAAATTTATTTTTAAAATCGCAATACGAAAAAGTCTTATTTGTTGGTCCTTTGAAAGCTAAAGTATCCCGAAACACACTGCTTAAAATAACTCTTTATATATTTGTCATTTTTTTTTACCAAATCGGTTATTGAGGAATGAACTTTGAGTATTTTGATGGTTAAGTTTTTTTCCGAGCACTAAATGACTCCTAAACACGTTGGTTAATGAGACACAAATTTCACATATTTGAATAGTTGATTTTTTTTTACAAACACAAAAGCATCCGAAACCACAACTTAACATCGTACTTTACATATTTTTGTAATTAAATTATTTTTATTCATCGAACCGGTTACTGAGAAACAAAACTCGCGTATTTGAATAGTTAAGCATTTCTCTTTACGTACTTTATTGCGAAATTACTATTTTATTTCAACAAATTGGTTATTGAGAAACACATTTTGGATATGTGAACAATAAATTTTTTTCCAGACTCTAAAATATTTCAAAACACGCTGCCTAACATCACACCTTAGATAAAAGTATGGAAAAAAATAAGGGATGGAGAATTAAAAAGAGAGAGGAGGGATTAAAAAAAAAAGAGGGAGGGGGGAGTTTGGCGCCAAAAGTGGGAGGGACCCACTTGAAACTACACAAGGTTTATATTTTAAGATTGCCTCAAGAGTGACATGACTCGTGATTTTTCTTGGTGAAAATGACATAACTCAAGATTAATTAACTAATTCTTTCTTGTTTTATAACAGATATGAATGGTTAGACATGTCTCTCATTAATCACATTCCTTTTCATGAAATTTTTTGGGAACACTCTTCATACTCTATTTTAATTTTTTTTTTTTGAATATATATTTTAATTTTTTTTTGTCTCAATCAATAACGACTCTGTTTTGCCCGTCCCATCCGCTAGCTGACAGCGGATGAAACTAGCGGGTGAAGAGTATACGTGTTTGGTAAGCACTAGCGTTTAACGTTTTTTCAAACGCTATTTCAAGTAGCGTTTTTTCAAACGCTAGCGGATAGCGTCTCACTTACTTTGGCATTTTTACCCTTTTTATTTTTCTTAAATTACTTCTCTATCCTTATTAAATAAATGTAATAATAAATTAAATAAATATGTCTTTTTATGACATTTTACATTTATCAGCTAGTTCAACTACTAGTTTTAGCAAACACACCATTTGCTATCAGCTAGCTTATCCGCTATCCGCTTATCAATTATTCGCCAGCTTATCCGCGATCTGCTACTTTTTAGAGAAGAGAGCCTAAATGATAAATGATAGTACTAACAATATGTTTTACATTCTATTATTATTTCTCCACACGTTTTCTGTTGAGAGAGAGAGAGAGAGTGAGTAATGGTAGTGAAGACTGAAGAGTCAAGAGAGCGTGTGGATGGAGTGAGATGGAGAGAAAAGAAAAAGGTTTGACTTTGTTGAAGGGTGTGGGAAACGCAAGGAAGAAAGCGCCATTAAGAAAACGCCAAGTGGAACAAAACAGCCGACGAAGTAAGTTGCGCTGATCCGTTTCCTCTCTACCTGCATTTACCACTCCATTGCCAGTAAAACCGATTTATTACAACACAACAACACAACACAAGAAGGAAGAGGGACCCTTTCACTCTCTCTTTCTTTCTTTCTCTCGGTGTGTGAACAAAAGATCATCAAAAACCAAAAACCCTCTCTTCTTTTTCAAAACCAGTTTCAGACCCTCCTCCTGGTATACTTTCCAAACTTTTACTTTTTATTTTATTTTATTTTTCACCATGGAACGTTTTTGTTTTTTTCTTATACGTTAAAAAAAATCTCTGAAAGATTCTGGACGACCTTGGACACTGTCTTGAGGGTTTGGTTGTCTGTCTGAGAATCTTTGTTGTATATATTCTTGTTAAATAAGAATGTTTTTTTATATTTTGAGTGTTTTTTATTGTTTGATTCTGAAACGGGTAAGTTTATTTTTCGGATGTTAACATCAGGTTTGGCTCAACTATAGCAAGATCTCTCTCTCATCACATAAAAAAAAACAAATTGTGCTTAAGAAGAAGCAAAAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01852.22	START	290	514	2.40E-38
PF00046.32	Homeodomain	87	142	2.30E-18

Gene family

Gene family	Subfamily
Transcription Factors Family	HB-WOX
Transcription Factors Family	Others

Gene Ontology

GO term	Description	Category
GO:0008289	lipid binding	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0003677	DNA binding	Molecular Function

InterPro

InterPro term	Description
IPR023393	START-like domain superfamily
IPR002913	START domain
IPR009057	Homeobox-like domain superfamily
IPR042160	Homeobox-leucine zipper protein GLABRA2/ANL2/PDF2/ATML1-like
IPR017970	Homeobox, conserved site
IPR001356	Homeobox domain

trEMBL

trEMBL term	Description
A0A1S2YZR8	_

SwissProt

SwissProt term	Description
ROC3_ORYSI	Homeobox-leucine zipper protein ROC3

KEGG

KO	Description	Enzyme
K09338	homeobox-leucine zipper protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G46880	homeobox-7
Medicago sativa L.	MsG0580025449.01.T01	_
Oryza sativa L.	LOC_Os10g42490.1	homeobox and START domains containing protein, putative, expressed
Cucumis sativus L.	Csa002170	_
Glycyrrhiza uralensis Fisch.	Glyur000450s00024052.1	_
Codonopsis lanceolata	Cl_chr05_32960T	_
Arachis hypogaea L.	AH05G39270.2	Homeobox-leucine zipper protein ROC3 like

Expression pattern