Gene detail

Detail information of Am04G010320.1 Annotation

Gene ID	Annotation
Am04G010320.1	xyloglucan endotransglucosylase/hydrolase 30

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G010320.1	mRNA	Chr04	29831286	29834964	+

Sequences

CDS:

>Am04G010320.1
ATGGATCGTCTACGTTGTTTTGGTACAACAACACTTTTTCTATTCTCTCTTTCTTTGTTTCTCTTTAGCTTCTCAAACGCAGCTTTCGACCTAGCCACCATACCTTTTAACGATGCTTATTCTCCTCTATTCGGAGATGGCAACGTTGTTCGCTCTTCCGATGGTTACGGCGTACAACTCAACCTTGATCGCTTCTCCGGTTCGGGTTTTATTTCTTCCAATATGTATCAGCATGGATTCTTCAGCGCGAATATCAAGTTACCATCGAATTATACTGCTGGAATTTGCGTCGCGTTTTATACATCAAACGGGGATGTTTTCGAGAAGTCACACGATGAGTTGGATTTCGAATTCTTAGGTAACATCGCCGGAAAACCGTGGCGGTTTCAAACAAATTTGTACGGCAATGGCAGCACTCACCGTGGTCGCGAGGAGCGTTACCGTCTTTGGTTCGACCCCACAAAGGAATTTCATAGATACAGCATTCTTTGGACCAACAAAAATGTCATATTTTACATTGATGAAGTTCCAATTAGAGAGGTATTAAGAAGTGAGGAAATGGGAGCTGATTACCCATCTAAGCCAATGTCATTATACGCCACTATATGGGATGCATCAAATTGGGCCACTTCAGGTGGAAAATACAAAGTGAACTATAAGTATGCACCTTTTGTAACACAATTCAAGGACTTGGTTCTCAAGGGTTGTTCCGTTGATCCCATCCAAGAAGTTTCCGGCGAGGAGGCTTGTTCGGACCAACATGCCGGTCTTGAAGCTCAAGACTATGCGGCCGTAACCCCATTGCGTCGCCTTTCGATGAGAAGGTTTCGCCAACGTTACATGTACTATTCTTATTGTTATGATACATTAAGGTACCCCGTGCCACCACCAGAGTGTGTTATTATACCTTTAGAGAAACAAAGGTTTAAGGAGACCGGAAGGTTGAAATTTGGTGGTAGCCACCGTCGGCACTCTAGGCGGGGTGGTCGAACTCCAATTCCGGTAGATGACACCGATCAAAGTGATATGTGA

Protein:

Promoter(3k):

>AM04G010320.1
TTTGCAACCACCGTCACCACGACACCTAACCAAAGTACAGTGTTTTCCTGGTTATTATTCCACTAACCAAACATTTCAATAATTTGGTTAGCACAATAATAACCATTCTAAACTATTTCTATGATTATTATTCCACTAACCAAACCTTTCAATAGTTTGGTTAGTACAATAATAATTAATCTAAACTATTTCTATTGTTATTATTGCACTACACTATTTTTCGATATCCATGATAATGTGTTTCAATGCGACTTACATCAATGGTGATGGCCACTGGATAGATGATGACCTTGCCTTAAAATATTTGGTCAATCATCATTTCAAGGATCGTTTCATCTCTCTTTCCCATTTCATTCAAACAAAATTAAAACGCTTTCATCTCTGTCGACTACGCCATCACACAGATACGCAACCACCGTCACCATGACACCAGCTAACCAAAGTACAGTGTTTTCCTGGTTATTATTGCACTAACCAAACATTTCAATAGTTTGGTTAGTACAATAATAACCACTCTAAACTATTCCTATGGTTATTATTCTCCTAACCAAACCTTTCAATTGTTTGGTTAGTACAATAATAATCAATCTAAACTATTTCTATAGTTATTATTGCACTACACTATTTTTCGGTATCCATGATAATGTGTTTCAATGGCGTGGATCAATAGCATAACGAGACATGATCAATGGCGAAAAGGAAGAGCGTGCTTCAATGGCGTGGATCAACGGAGTCCGTTTTTTAAACACCCGTGGGGGTCTTATTTTTTTGCGTGAGTGCGCTTTTTAGACTTCTTTTGCGTGATAAATAAAGAAAGAGATATGTATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATAACGTGAAAAATGAGCGTAAGAGAAAATTGTGAGAGAGAAGATAGTGGAATTGTGAGAGAGAAGATAGTGGAAGAGAAAATCAAGGAAGAAAAAACTATTTTGTTTTAGTAATCCCTAAAAAAAGGCATATTTATTAAATTATTTAAGGTAATTAAAACAAAAAAAAGGATGTGACACAAATACCCTTATTAAATACTAGCCATTAGATTGAGTTTCATTGAAATTTTGTCAATCCAATGGCTAGTAATGATTTAGTAACTATTACTAAGCAAATAGCTTAGTACTACAAGCCGTAGCCTCTGAGACCCAATTTATACAAAAAAAAATAATAAACACAAAACTAATGGTGTGGGCCATGAAATCAGATTTATTATTTTAAATAACCTTATATATCATCTTTTTAATGTTTGCGTCTTTTCTATTTGAGTAAAAAAAAGTGTGTTTTTTCATCTTAGAAACGGAGTCTTCTATTTCTTTCTGGTGATCCTAATTCTAACCCAATGGTAATAGTTTAGAGCTTGTAACTTCAAGAGACAACATTCAGATCACTCTGAAATCTGGATGTTTTGTTTTTGAGAAAAATGGTAGTAAAAATCTGGATGTTTAAAAATGGTAGTAAAAAGTATAACAAAAAATTGACTCTTAATGATGATAAATGTAATTGTCAAAAAAATGATAATAAATGTAATGAGATGGAAAATAAAAACAGCAGCGTGGCAGTAATTGTAATGACACCGGACGCGTTCTTTCTGCCCGCAAATATTGAATTCGAAGCAATTCTAAATTAGAATTAAATCATAAAATCAATGCCTTTATTATTTTCCGAAAATATCCCTGCTATTATGGCCAAATTACGTGGCGTGTTCCCACACGCCTTCTCCTAACTGCTGACTTCACCTTTCCAGCGGACGATAATGCCCATCACTGTCACATATTTTACTCAACTCTTTTTTATTTCAAATCAACCCCCCTCTCTTTCTGATTTTCTCATGTAATGTAAATTTAATAACTATCAATTGTCCGTCCCTTTTCATATTCTCCAAGGTGTTATTCTTTGATCAGACTTTTGAATATTGAGACTGAGCTGGCCAATATTATTCATCTCACAATTCACAAGCTTGGCATATTCTGCCACATAATACTTAATTCACAAAGAAACAAAATACCCATATTGGTTTTAAATTTAATCATAGTATATATGCATGTTTTGTTGGTTTAACTATTTTTTCCCTTCATAATTATCATGAGCTAGCTAGAAATTATTTTGAATAACAAAATACTATATGACTTAATGCAACAATAGTAATGATGTTACGATCCATTCCTTCTAATCAAAATTGATCATCATAATATATACGTACTGAAAAGTGAAAACAACTCATTTGCTTAGGGGGGAAGATATATATAATTATAGTCTTAATTATTAAACATAAGAGAAGTGCCACTTTGCAGTACACGTGTGAAGGTAATAAGCCATCACCTACCTCATCACCCTCCACTAGGGTTTTCTTGGGGTTCAATTATTTTGGCATTGTGATGTGAATTGCTACCAAAAACATGCTTACAAAAAAATTAAAAATCAATATTGGAGGATCATTATCATATCCATAGATGATTATTTCCCTTAATTCAAACTCGTAAATGAAACCACCCTTTAATATAATTATATTATGGATATGATAATGATCCTTATCATATTCGTCACCCCAATATAATTTAGCAATAAAATAATAGCAAAATAAAATAAAATAAAAATTTGAATCCAACAATGATAGCAGCAACCTAACGATAAGCACATATTCTCGCCTCAAAATTAAAAATAAAATTTGCATATATACAGTGGCATGTCTCATCATGATGATATATTCCTATAAATCCAAGGGCAATTTTGGAAAAACAAAATTAAAGGCATGAGATAACAAGCAGCAGCCAATGAAAGACCAATATCCCTTCTCACTGATTTTTCCCATCAACTTGGCTGTGTATAAATATATAACTGAATCGAGAAAACTCAGGAGTGTTTTTGGAGAGAGAAAGAAAAAAAGAAACGGCACATCGTAGAAACAGAAAAACAAAAAATTAAAATTAGT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00722.24	Glyco_hydro_16	39	220	3.10E-52
PF06955.15	XET_C	264	299	3.30E-14

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH16

Gene Ontology

GO term	Description	Category
GO:0048046	apoplast	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Molecular Function
GO:0042546	cell wall biogenesis	Biological Process
GO:0071555	cell wall organization	Biological Process

InterPro

InterPro term	Description
IPR010713	Xyloglucan endo-transglycosylase, C-terminal
IPR016455	Xyloglucan endotransglucosylase/hydrolase
IPR008263	Glycoside hydrolase, family 16, active site
IPR000757	Glycoside hydrolase family 16
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily
IPR044791	Beta-glucanase/XTH

trEMBL

trEMBL term	Description
A0A8B8M234	_

SwissProt

SwissProt term	Description
XTH30_ARATH	Probable xyloglucan endotransglucosylase/hydrolase protein 30

KEGG

KO	Description	Enzyme
K08235	xyloglucan:xyloglucosyl transferase	[EC: 2.4.1.207]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G32170	xyloglucan endotransglucosylase/hydrolase 30
Medicago sativa L.	MsG0580025440.01.T01	_
Oryza sativa L.	LOC_Os02g03550.1	glycosyl hydrolases family 16, putative, expressed
Cucumis sativus L.	Csa002150	_
Glycyrrhiza uralensis Fisch.	Glyur000450s00024062.1	_
Codonopsis lanceolata	Cl_chr07_12000T	_
Arachis hypogaea L.	AH05G39390.1	Probable xyloglucan endotransglucosylase/hydrolase protein 30 like

Expression pattern