Gene detail

Detail information of Am04G008830.1 Annotation

Gene ID	Annotation
Am04G008830.1	hydroxy methylglutaryl CoA reductase 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G008830.1	mRNA	Chr04	24673530	24677153	+

Sequences

CDS:

>Am04G008830.1
ATGGATGTTCGCCGGCGACCTACTAACGCCGTCGTCTGTTCAGTTCCTTCCGACGAGCCTTTGAAAACGAAGAACCTGAAGCACGATTCACATTCAGTGACTTACGTGACCAACACAATGTTCTTTGGTATGTTCTTCTCTGTGGCCTACTACCTCCTCCTCCGGTGGCGCGAGAAGATCCGTACATCCACCCCTCTCCACTTTGTCACCATCTCCGAGATTGTTGCAATCTTCTCCCTCATCGCCTCAGTCATCTACCTCACGGTCTTCTTCGGCATTGGTTTCATCCTCCATCCCTTTGCCGCTTCCCGTGCCGTTACAGATGACGAAGATGAATACGCCGTTATTGCGGAAGAGACCGGTAACTGCCTCGTCGACTGCTCTTCCGTCTCGCCAAAACTTCCCTTATCATCACCGAAAATCGCCGACCAGAAACCCCCGCTGGTGCCGTTAATTCTCTCCATGGAAGACAAGGAGGTCGTCCGTGCGGTGGTGTCAGGTTCCATTCCATCATACTCGCTAGAATCAAAACTTGGGGACTGCCGGAGGGCGGCAGCAATTCGACATGAAGCCGTTGAAAGTATTACCGGAAAGTCACTGGAAGGTTTACCAGTTGAAGGATTTGATTATGATTCTATATTAGGACAGTGCTGCGAGATGCCAATAGGATTTGTGCAGATTCCGGTCGGGGTAGCAGGTCCTTTACTGCTGGACGGGAAGGAATACACGGTGCCAATGGCCACCACAGAAGGTTGTTTGATCGCCAGCACTAACAGAGGCTGCAAAGCCATTTACGTTTCTGGTGGAGCTTCTGCCGTGGTCCTCCACGATGGCATGACGAGAGCTCCCGTTGTTAGATTCAACTCCGCTAAAAGAGCTTCTCAGTTGAAGTTCTATTTAGAAGACCCGCTCAATTTTGATTCCCTCGCTCACACTTTCAACAAGTCAAGCAGATTTGGGAGATTACAAAATATTAAGTGTGCTTTGGCAGGAAAGAATTTGTACATGAGATTTACTTGTTCCACTGGGGATGCTATGGGAATGAACATGGTGTCCAAAGGAGTTCAAAACGTGCTTGATTTTCTTCAGAGTGATTTCCCTGACATGGATGTGATTGGAATATCTGGGAATTTCTGTTCGGACAAGAAAGCAGCGGCGGTGAATTGGATTGAAGGGAGAGGCAAATCGGTGGTGTGCGAAGCTGTAATTAAGGAAGAGGTGGTGAAGAAAGTGTTGAAGACGAGCGTGGAAGCATTGGTGGAGCTTAACATGCTCAAAAACCTTACCGGCTCTGCCATAGCTGGTGCTCTTGGTGGTTTCAACGCACATGCTAGCAATATTGTTTCTGCTATATACTTGGCAACAGGTCAAGATCCTGCTCAGAATGTAGAGAGTTCTCACTGTATCACCATGATGGAACCGGTCAACAATGGAAAAGACCTTCACATCTCTGTCACTATGCCTTCCATTGAGGTGGGCACAGTTGGAGGGGGCACACAGCTCGCATCTCAATCAGCTTGTCTTAATTTACTTGGTGTTAAAGGTGCTAGTAAAGAGACTCCAGGCGCAAATTCTAGGCAACTAGCAACTATAGTAGCCGGTTCAGTCCTCGCCGGGGAGCTCTCACTCATGTCTGCAATTGCAGCTGGGCAGCTTGTCAAGAGCCACATGAAATACAACAGATCCATTAAAGATATCTCCAAGATTGCCTCATGA

Protein:

Promoter(3k):

>AM04G008830.1
ATATATATATATATATATATATATATATATATATATATATATATATATATATATATGGGCTGGCAATTTGAAAGAATTGGAATACAATGAAAAGAAGGCCCATGCACGGCCAACTAGATTGAAAAAAAAAGGGTTCGGCCGTGAGTATGATATAAAAGAAGGGCCGCACATAATAATTGAAGACAAGCAGGGTGGAGTGACGAGAGAGAAAGCAAAAAAAAGACTAACTTGCACATAATAATTCAGGACTTAAGTCTTAACTTTATTTTATTAATTTCCATGATTTTGGATAAAATCTTCTGTTAGGGTCTTTGTCAAAAAAAATCTTTTGTTAGGGTCTACGGTGAATCTTATAGGCTTAAATACATTTTCATATTATATAATTTCAATTTTGAATTCCTATTTTTATTTAATTCAATATTGTCTTATTGATTTTATCACATAATTAATATTGATCACACTTTGCAGGTTAATAATCAATTGGCTAAATTATAGTTTTGGTCCCCCTATTTTCACAAATTCAGACATTTAGTCCCCCTATTTGAAAACTCAGACATTTAGTCCCCCTATTTTAAAAAATTCAGACATTTAGTCCAAAGACGGATTTTGTCATTTTTTTTGCTGAGTTGAAATTCTGCCAAAAAATAAATCTGATGTGGCACTCATTAAATGTGGTGGCATTTAACACGTGGCTGCCACGTCATTATTTAATTAATAAAATATTAAATCAAAAATTAAATTACAAAATTAAAATGAAAATCAACATTTCATCTTCAATCACTTCTTCTTCCTCTCATCGCTTCTTCTTCTCTTCTCTCCCTCGACCACTTCTTCTTCCTCTCATCGCTTCTTCTTCTTCCCCTTCGATCACTTCTTCTTCTCTTCTCTCCCTCGATCACTTCTTCTTCCTCTCATCGCTTCTTCTTCCCCTTCGATCACTTCTTCTTCTCTTCTCTCCCTTTTTTCTCTTCTTCTTCCTCTCATCGCCTTCTCTTTCTCTGATACGATGCAATTAGATTTGCGAACTATTTAGCGAGATGAACGAGGTTTGCGAAGAATGAGTTGGTTTCTGGGTTCGATTTATGTTCGATCTGGGTTTGATTTGGGTTTTGTGTTCAATCTGGGTTTGTTTTGATTTAGGTTCGATCTGGGTTCGATTTGGGTTCAATCTGGGTTCGATTTGGGTTTTATTTTGATTTCAATCTGGGTCTGTGTTTAATCTGGAACTCACGAATAGAGAGTAACGAAGACGTGGTGATAGTTGTGTGGCGGCCATGGGTCTCGAGCGGCCATGGGTCACGCGGTGGTGGTGCGATTGCGAAGGTAGCAGGACGGAGGGAGTATAACGAAGGTAGAAGGATCTGGTTCTGAAGGATCTGGTTCTGAAGGATCTGGTCCAGAAAACTCAGATCTTGAAGATCCTTTGAAGGATTTTGGTTCTGAATTGTTGAACGTGTTTTCTGGAAGTTGATTAATTATTTAGTTATTATAAATATAGTTTATTAATTATTAATTATTTAGTTATTATAAATAATAAATCTGATATGGCAATGCTTATGTGGCTTCATTAAATGATGTGGGCAAGTTGAGTCAGCTGCCACTTCATTTAATGAGTGCCATGTCAGCATTTTTTTTGTCAGAAGGCCAACTCAGCAAAAAAAATAGAAAATCCCTCTTTGGACTAAATTTCTTTGATTTTTTAAAATTGGGGGACTAAATGTCTGAGTTTTAAAATAGGGGGACCAAATGTCTGAATTTTTAAAAATAGGGGGACCAAAACTATACTTTAGCCTAATCAATTAATTGATCAGCGACCAAACTATAATTAATTAGTAGACCTATAAGATAATTGAGACTATAATTATAATATGACCAAATCGTAATTTAGTCTTCTTATCATTCAAATCTTTTTGTTCTTTATGTTTTTCTTGAATTTAAGTTATTTGAATGGCCGAATAAGAAATTAATTTAATAAAAAGAATATTAATCGCGACTGAACAACAAACTAGCAATTTTAGTAAAGAGATTGATAATTCAATAAAATAAAAGATATTAAATAGAATTAGACATAAAAGAGTAAAAGATTGCAAGTGAAACTGTGACCTTAGTGCAATTTCCATCGATGGATCACAATTGGGTGCAGTCATGACTGTGGTGCACTTATGCAGTCACCTAATCCCATCACCCTTGGATTGACTTTAAAATAAATCTTGACCATTGATTATTTTGATTTACAAAATTAAATGAAAATTAAGGGAGGAGAGATAAGGACACCGGTGAATGCATCGGATCCAAATCCTCCATCGGTTACACATTGCATTTTTATTCTTGTTTTTTATTTTTTTTATTTTGTTTCTACAATCAAACTATTCATTCTTCTAAATAGTTAAATTACTTGTGTAGTTAATGTATTTTTTCAAATGTGTTTTTTAAAATCTGTTTTTAAAAGCAATGAAATTTAAATGAAAAATGAGGTTGGTAATTTAAAAAGCTTAGGTAAAGATTACTAGTTACACCTTTATAAAATAGGATAGGAGAAGGGAAAGCAATAGAGAGGAAAAGCGTAAAACGGTAGCTCAGTTGGCGAGCTAAGGAATACCGAAGAAGTATACCAAATGAATGTAAGAAGGAGGTCCCAGATTCAAACTCGGAAAAATAACATTTCCCCAATAACATTGCCTATAAAAAAACAAATAGGGAAAGCGTAAAACGGTAGAAGAGGTAGAATTTAAGAAAGAAAGCGTAGACTAGTAGTAAGATCGTGGAACCGGGTACTACTTTGTGGAATAAGCAGAGTCCCGCGCGCCAACGTCCCTCACTTTTTTCTATATAAAAGCCTTCGTATTTTTCTTTCACTCAACCAATCAACCCCCAACTCAATTCTCTTCCCAGTCCACTTAATACTGTACTAATTATTTTCTCTACTTGCTTTTCTTTCTTTCTCTTTCCTTTTTCTGATTTCAATTTCAAAATCCCTCTTCCCCAAACCCCGACAGAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00368.21	HMG-CoA_red	185	561	6.00E-144

Gene family

Gene family	Subfamily
Transporter family	RND

Gene Ontology

GO term	Description	Category
GO:0005789	endoplasmic reticulum membrane	Cellular Component
GO:0008299	isoprenoid biosynthetic process	Biological Process
GO:0005778	peroxisomal membrane	Cellular Component
GO:0016126	sterol biosynthetic process	Biological Process
GO:0009507	chloroplast	Cellular Component

InterPro

InterPro term	Description
IPR023282	Hydroxymethylglutaryl-CoA reductase, N-terminal
IPR004554	Hydroxymethylglutaryl-CoA reductase, eukaryotic/archaeal type
IPR009029	Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain superfamily
IPR009023	Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily
IPR023076	Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site
IPR023074	Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain superfamily
IPR002202	Hydroxymethylglutaryl-CoA reductase, class I/II

trEMBL

trEMBL term	Description
A0A075EC73	_

SwissProt

SwissProt term	Description
HMDH1_SOLTU	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1

KEGG

KO	Description	Enzyme
K00021	hydroxymethylglutaryl-CoA reductase (NADPH)	[EC: 1.1.1.34]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G76490	hydroxy methylglutaryl CoA reductase 1
Medicago sativa L.	MsG0580025689.01.T01	_
Oryza sativa L.	LOC_Os08g40180.1	3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed
Cucumis sativus L.	Csa016501	_
Glycyrrhiza uralensis Fisch.	Glyur000037s00002618.1	_
Codonopsis lanceolata	Cl_chr01_30780T	_
Arachis hypogaea L.	AH01G09670.1	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 like

Expression pattern