Gene detail

Detail information of Am04G008050.1 Annotation

Gene ID	Annotation
Am04G008050.1	Pentatricopeptide repeat (PPR) superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G008050.1	mRNA	Chr04	22534252	22536474	-

Sequences

CDS:

>Am04G008050.1
ATGGCCAGAGTCTCCACGCGACAACTTTTTCCCTTCCGAAACGCGTTACACTCACGCCCCATCACCATCACCAACACTGAAACTTCTACTTCTCCTTCTTCTTCGCCAATTACTTTTATTTCATCAGAAGAGAAAAAAAGAACACCGTCACTCTTCACCCATTTCCAATCACTTCTTCAAACCACTTGCAAAACCACTAACCAACTTCTTCAAATCCAAGCTCTTCTCATCACTTCAAGTCTTTTCCGCAATCCCTTCTTATCTCGCATTCTTCTTAGTCGCGCTTCTCATTTATGTGACATCGCTTTCACTCTTCTCATCTTTCGACACTTCAATAATCCCTTTGATACATTTTGCGTTAACACAGTTATCAACGCTTTCTGTAACAGTCGTGTTCCTCACCAAGCTCTCCTTTTTTACTTTCACTCTTTGAAGAATCGTTTTTTTCCCAATAGTTATACATTTGTTCCTCTCATTGGTGCTTCGGCCAAAATGTGTTGCATTGACTCTGGTCGAAAGTGTCATGTGCAAGCGCTGAAAAATGGGGTTGACTTTGTCTTACCGGTGCAGAACTCTTTGGTTCATATGTATGCTTCTTGTGGGGATGCTCAGCTTGCTAGGGGGGTCTTTGACACTATTGTTGCTCGAGATTTGGTTTCGTGGAACTCAATGATTGATGGGTATGTTACGGTTGGTGATTTAAGTGCTGCACACTCACTGTTTGATGAAATGCCTGGGAGGAATTTGGTTACTTGGAATATTATGATTAGTGGGTATTTGAAGGGTAGGAACCCTGGTTATGCTTTGAAGTTGTTCAGGGAAATGGGTAGGCTTGGATTGAAAGGTAATGCTAGGACTATGGTTTGTGTAGTCACGGCTTGTGGTCGGTCTGGTAGGCTCAAGGAAGGAAGATCAGTTCATGGGAGTATAATTAGGGTGTTTATGAGATCAAGGTTGATTCTTGATACTGCTTTGATAGATATGTATTGTAAATGCCGGAGGGTTGATGTAGCAAATAGAGTGTTCGACAGAATGACTAACAAGAATTTGGTTTCGTGGAATGCGATGATCTTGGGTCATTGCATCCGTGGGAGTCCGGGGGATGGATTGAGCCTGTTTGATGAAATGGTTGGGATAGAGAAGGTTACAAATGGAGTTGAGGTTGGTGAAAATTCAAGTTTGGATAGGGGTGTGGTGGGGTTAGTCCCTGATGAAATAACATTCATTGGCGTTCTCTGTGCTTGTGCTCGGGCAGAACTTTTGACTAAGGGCAGGTCTTACTTCAAACAAATGACTGATGTGTTTGATGTGAAGCCCAATTTTGCTCATTTTTGGTGTATGGCGAATCTTCTTGCAGCCGTGGGGCGTGTTGACGAGGCAGAAGAGTGTCTACAGAACATGGCAAAATTTGATGGGGACATGTGTCAGGAGTCATTGTTATGGGCAAGTTTGCTTGGACAATGTGGGTTCAAGAGAGATGTTTACTTGGGGGAACAGTTTGCTAAACTTCTGGTAGACATGGATCCCAAGAACCTCGCGTGTTACCAGTTTCTGCTGATCATTTATGCCGTGTCTGCTCATTGGGAGAATGTTTCTAGAGTGCAAAACTTGATGAAGGAAAGAAGGTTAGGGATAATACCTGGAAGCACTCTTGTGGACTTGAAATATATTGTTCACAATTTCAAAGTGTCAAACAAACGGCATGAAGGAATTGAAGCTGTAAACATGATGATGAATGAATTATGTCAAAGATTCAAGTTGCCATGTGTTGATTCAGGCCACTCATCAGTGGGAGAGATAGGAGATAAAGACCAGAATGACAGATAA

Protein:

Promoter(3k):

>AM04G008050.1
GTCAATTTTGGTGCTCGGTGGAAAACTGGTGATGGCACATCTATCAACGTTTGGAATGATCCTTGGGTGAAAGGAGGTACTACTTTTTGTTTCTTCTTGTGTGGTGCCGGGATGTGAGAATATGACAGTGGCTAATCTTTTTAATGCAAATGATGGGTTGTGGAATATTTCTTTGCTAGACCAATTATTTAATGAAGAGGATAAAACTCGCATAAATGGGATGGTGCTCCATGGGAGGGACGTTGAGGATAAGTTGGTGTGGAACAAAAGTAGAGATGGCCTTTATTCAATTAAGTTCGCTTACTACGTATGTATGAATGAATTGATTGATAGTTCGGAGTTTCGTGCGTCGGGTGAGTGGCATTTAATTTGGAAACTTAAGGTTCCACAAAAGGTAAAGATCCATTTGTGGCGTTGTGCTCGAGGGATTTTCCCAAGTCGGTTTAATCTTCGCAAGCGTCATGTTAATTGTCTGGTGGAGTGTCCGTGGTGTGATCATGAGGAAGAGAGTGATTGGCATTTATTTTTTGGGTGCTCTCAAGCTGAAACCGTGTGGAGACAAGCTGGTCTATGGAACCTAATTCATCCATTTTTTACCGTTGGGGCTGCTGATTTTAAATGTGTTTTTTCTATTTTGGAGGCCTTGGCCGAAAATGCTAGGAAAAGCCTGGCTATGATCCTTTGGTGCTTGTGGAAGAGGAGGAATGAAAAATATGGGAGAACACGGTTAGACCAGCTACTATTTCTATTTCCTGCGCAATGAAGTTCTTGTTCGGTTGGCAGCAGGCTCGGCGCCCAGCCCGTGTGCAGGAGCAGCAACTGCCGCGGCCTGTCACTTCTAATTCTGCTGGTGCTGGTGCTGTGTGGGTTCGGCCAGCAGGTGATCTTGTGAAGTGTAATGTGGATGCGGCGTTGTTTGATGATAATAGATTTGGCATTGGTCTGTGTATCAGGGACAGCAAAGGTTCGTTTGTAAAAGCGAAGTCAGCCTGGTTTTATGGAGTGCCACAACTACAGGAGCAGAGGCTTTGGTATTATTATTAGCGGTCAATTGGTTACAAGAATTAGGCATCCAAAGAGTTACCATCGAGCTGGATTGCAAAGCAGTGGTAGATGGCATCAGAGGAGTGTGTAATTCTGTTACTGAGTTTGGCTCAAGCTTGAGAACTTGTAAGACTTTATTCTCTATGACACAAAACTATGTGGTTAGTTTCATCCGGAGGCAAGCCAACCTTGTTGCTCATACGTTAGCTAGAGCATCAAGGGATTTTGCTAGCTCCCAAGTTTTTGATTGTTGTCCGACTTGTATTACCACTTTGATTATGAATGAAATGAAATGATATAAATTTCTCTTTGTAAAAAAAAGGCTAAATTGCTGTTTTGGCCCTTTATCTTTGGGGTTGGTGTCACTTTGGCCCTTTATCTTCTTTTTTTCTCGTTTTAGACCCTCATGTTTTTTGTGTGTGTCATTTTGGCCCCTGCCGTTAATTTTTTCTAACGGACGCCACGCTGGAAGTTAACTGCTGACGTGACGTCTTAAATGTCAGGGTTGACTTGGACTTGATTTGGTGATGTGGCACATAAGGGACCAAATTGAAATTCAAAAAGAACATGGGGGGCCAAATTGACACAAACACAAAACATTCATCTTCTTCCTCCAAACACCACCTCCATCTTCATCTTCTCCGGCGAGCCACCACCACCTCCGATGAGCCTCCGCCCCCACCACCACAAACAGTGACATCACTTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCCTCAAGAACACCAAAATTCTCAATTCTTCACCAAATCAAGCAAATAAATAGTGCATTTCATGCGAAATTTCACAAGGAACTAGAATCCATCACCAATTCTCACAAAAAAGTGGAAGAACTTAATCAAAAACGTGATTTTCAGAGGAAAACGCGTTTTGGGTTTTGCAAATTGGGGAAACCTTCAAAACTCAACCAAAATTCACCAAACCACTTGCAATAGACTCGAAATTGGTGCAGTAACTGACTGATAGCAAAAGATTTCAACAAAAATGATAAAGAATTGAGAACGAAATGAAAATGTAGATTCACATTTTACGGTTTTTTGGGTTTTTCAATGACGAAGGGAGAGAGAGAGGGGGAGGGGGAGAGAGAGAGAGAGAGAGAGACGATGTCACTGTTTGTGGTGGTGGTGGCGGAGGCTCACCGGAGGTGGTGGTGGGTCGCCGGAGAAGATGAAGATGGAGGTGGTGTTTGGAGGAAGAAGATGAATGTTTTGTTTTTATGTCAATTTGGCCCCCCATGTTCTTTTTAAGTTTCAATTTGGTCCCTTATGTGTCACATCACCAAATCAGGTCCAAGTCAACCCTGACATATAAGACGCCGCGTCAGCAGTTAACTGTCAGCGTGGCGTCCGTTAGAAAAAACTAACGACAGGGGCCAAAATGACACACAAAAAAAACTTGAGGGTCTAAAACGAGAAAAAAAAAGATAAAGGGCCAAAGTACACCAACCCCAAAGATAAAGGGCCAAAGAGCAATTTAGCCTAAAAAAAAAATAATTAATACATGCATAAAAGATATGTCTCCACTTTAAGAGATTGGTCTAATAGACCATTACAAAATCTTTTATCTCACCACCGGTTAAAGATTTTAATCCTAATAGTCTTCATAGAGTTAGCTAAATCTAAATTCTTTATAAGTGCTCTCAGAGTCTCGAGGTATTCGCCTAAAATTATAATTTGTGCAAAAAAAATAAAAAATCAACTCTTCCCTAATCTAATGACATGGATATATTGTGAAATAAGATGAAGCTAGTTAGGTCTTGTACAATAATTAATCCCTAACAATTTGCGTTTGAGAACGCACCGTTTAGAGCGCGCATTGGAAACTCTACAGAGAAGAGGAGAAAAGAGAAGAGAAGAGAGGGGGAGCATGTACGTCAATGGCGATTAAGCGGCCAGCCCCAGAAATTTGTAGTAAACAACCTCCAAATGA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01535.23	PPR	219	248	4.00E-43
PF01535.23	PPR	250	280	4.00E-43
PF13041.9	PPR_2	217	248	9.70E-38
PF13041.9	PPR_2	248	294	9.70E-38
PF20431.1	E_motif	493	552	8.40E-08

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0009451	RNA modification	Biological Process
GO:0003723	RNA binding	Molecular Function
GO:0043231	intracellular membrane-bounded organelle	Cellular Component
GO:0004519	endonuclease activity	Molecular Function

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR046960	Pentatricopeptide repeat-containing protein At4g14850-like, plant
IPR002885	Pentatricopeptide repeat
IPR046848	E motif

trEMBL

trEMBL term	Description
A0A2K3NJW2	_

SwissProt

SwissProt term	Description
PP278_ARATH	Pentatricopeptide repeat-containing protein At3g51320

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G51320	Pentatricopeptide repeat (PPR) superfamily protein
Medicago sativa L.	MsG0180002492.01.T01	_
Oryza sativa L.	LOC_Os05g01635.1	expressed protein
Cucumis sativus L.	Csa010210	_
Glycyrrhiza uralensis Fisch.	Glyur000232s00013748.1	_
Codonopsis lanceolata	Cl_chr03_22910T	_
Arachis hypogaea L.	AH04G12110.2	Pentatricopeptide repeat-containing protein At3g51320 like

Expression pattern