Detail information of Am04G008040.1 Annotation
Gene IDAnnotation
Am04G008040.1 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am04G008040.1mRNAChr042253052222532438+

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF01466.22Skp11061539.50E-32
PF03931.18Skp1_POZ5642.40E-31
Gene family
Gene familySubfamily
Ubiquitin FamilySkp1
Ubiquitin FamilySkp1

Gene Ontology
GO termDescriptionCategory
GO:0016301kinase activityMolecular Function
GO:0005737cytoplasmCellular Component
GO:0016874ligase activityMolecular Function
GO:0031146SCF-dependent proteasomal ubiquitin-dependent protein catabolic processBiological Process
GO:0016567protein ubiquitinationBiological Process

InterPro
InterPro termDescription
IPR001232S-phase kinase-associated protein 1-like
IPR016897S-phase kinase-associated protein 1
IPR036296SKP1-like, dimerisation domain superfamily
IPR011333SKP1/BTB/POZ domain superfamily
IPR016073SKP1 component, POZ domain
IPR016072SKP1 component, dimerisation

trEMBL
trEMBL termDescription
A0A9D4YHQ6 _

SwissProt
SwissProt termDescription
SKP1B_ARATHSKP1-like protein 1B

KEGG
KODescriptionEnzyme
K03094S-phase kinase-associated protein 1

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT5G42190 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
Medicago sativa L.MsG0180002489.01.T01 _
Oryza sativa L.LOC_Os09g36830.1Skp1 family, dimerisation domain containing protein, expressed
Cucumis sativus L.Csa015744 _
Glycyrrhiza uralensis Fisch.Glyur000232s00013749.2 _
Codonopsis lanceolataCl_chr07_21500T _
Arachis hypogaea L.AH11G01690.1SKP1-like protein 1B like

Expression pattern