Gene detail

Detail information of Am04G007940.1 Annotation

Gene ID	Annotation
Am04G007940.1	glycosyl hydrolase family 35 protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G007940.1	mRNA	Chr04	22315430	22320361	-

Sequences

CDS:

>Am04G007940.1
ATGTTGACTACTAGGACTAGCAAATGGTTGTTGCTCAGAGGCACAGCTCTTGTTGCAGTGTTTCTTCTTTCCGCGGTTGTCGGCGGCGCAGAGAAGGGCGTGACTTATGATGGGAGGTCACTGATCATCAATGGTCAAAGGAAGCTTCTCTTCTCTGGTTCTGTTCATTATCCTCGTAGTCCTCCTGAGATGTGGCCAGACATTTTCAAGAAAGCCAAACAAGGAGGGCTTAATGTGATTCAAACTTATGTTTTTTGGAACATTCATGAACCAGTGCCTGGCCAATACAATTTTGAAGGAAATTATGATCTAACTAAATTCATAAAGATGATTGGGAAGCATGATATGTATGTAACACTTAGAATTGGACCATTCATTGAGGCAGAATGGAATTATGGAGGACTACCAATATGGCTAAGAGAAAATCCCAACATTATATTCAGATCAGATAATCAACCTTTCATGTATCACATGCAAAAGTTCACCAAAATGATCATAAGGAAGATGAGGGATGAGAAGCTTTTCTCTTCTCAAGGAGGTCCAATTATTTTGTCACAGATTGAAAATGAATACACCACTGTTCAACAGGCATACAAAGAACACGGCACGCGATATGTTCATTGGGCAGGAAACATGGCTGTTGGACTAGATACTGGAGTTCCATGGATCATGTGTAAGCAATTAGATGCTCCAGGTCCTGTGATAAATACTTGCAATGGAAGGTATTGTGGAGATACCTTTGCTGGTCCAAATAGTCCTAACAAACCAACTTTATGGACTGAGAATTGGACAGCACAATACCGAGCATTTGGAGACCCTCCATCTGAAAGAACAGCTGAAGACATTGCATTCTCTGTGGCTCGTTTCTTCTCAAAGAATGGAACTCTTGCTAACTATTATATGTATTATGGTGGAACAAATTTCGGCAGAACATCATCTTCTTTTGTGACAACTCAGTACTATGATGAAGCTCCACTTGATGAATATGGTTTACCAAGGGGACCAAAATGGGGTCACCTTAGAGACTTGCATGCTTCTCTAAAACTTTGCCAGAAAGCATTGCTATGGGGAACTCCATCTCTGCAAAAGTTGGGGAAGGATTTAGAGGGTAGAACTTATGAAGGGCAAGAAAATGCATGTGCTGCTTTTTTATCCAACCATAACACCCTTAAGGAAGCAACTGTGGAATTCAGGGGTGCCAAATATTACCTTCCCCCGCGTTCTATAAGCATACTTCCTGACTGCAAAACGGTTGTCTACAATACACGAATGATCGTCTCGCAATACAATGCAAGAAACTACAAGAAATCAAAGATTGCTAATAAATTCCGGTGGACAATGGTTAAAGAGAAAATTCCTACTCCAGATGTTTCTCAACTTAAATCAATGGATCCTTTAGAACACTTCAGCACAACTAAGGATACCACTGATTATCTATGGTTTACGACGAGTGTAAAATTGGACTCAACTGATCTACCCATAAGGAAAAGTACTACACCAGTGCTTGAAGTATCATCTCTTGGTCATGTTTTGCATGCATTTGTTAATGGTGAATATGTAGGATCTGGGAATGGAAACAACATAGTAAAGAGTTTTTTCTTCAAAAAACCAATATCCTTGAGACCAGGAGTTAACAACATATCAATCTTGGGGACAACAGTTGGATTCCCAGATAGTGGATCCTACTTGGAGCACAGGGTTGCCGGTGTCCGCACAGTGTCACTGCATGGCCTTAACAAGGGTTCCCTTGATCTGTCATACAATGGATGGTGGCATAAGATAGGCCTAGATGGTGAAAAGCTCAACATTTTCACAGAGAAAGGTTCCCAAGGGTTTCAATGGACCAAAGTTAACAAGGGACCAGCTCTTGCTCTTACATGGTACAAGGCTAACTTTGATGCTCCTGAAGGAAATAATCCTGTTGCAATTCAAATGGAAACTATGTCCAAAGGCATGGTTTGGGTGAATGGTAAAAGTATTGGCCGTTACTGGTCATCATACCTCTCACCTTTAGGAAAGCCTTCTCAGCCAGTGTATCACATTCCTAGGGCATTCTTGCAGCCAAAGAAAAATGTTTTGGTTGTGTTAGAGGAAATGGGAGGGAAACTAGATGGCATAGAGATACTAACTGTGAATAGAGATACAATTTGCAGCATAGTAAGGGAAGATTATCCTCCAAATGTAGAGACATGGAGCAGAGATGGGGGTGTGGTCAGGACCAATGTGGATATTCCAAAACCAACAGCAAGCTTAGTGTGTCTGGACAACAAAACTATTACTCAAGTGGACGTTGCTAGTTATGGTGATCCAGTAGGAAACTGTGGACATTTCATTCTCGGAAAGTGCAATTCACCCAAGAGCAAAAACATTGTTGAACAGTACTGCTTGGGAAAGACAAAGTGTACAGTGCCTGTAGACAAGAATATTTTTGATAAGCATGGAAATATTTGTCCGGGAAGTCCAAAGACTCTAGCCATTCAAGTGCACTGTGGACATAAGAATTCTCGATCCCATATGTCAACTTGA

Protein:

Promoter(3k):

>AM04G007940.1
GGCACCACGGTAACTCAAAGGTCTTAATCTGTTATAATCCTCTTGTCCTGTTCCACAAATAACACAATAAATCCAGAAAGAACCTCCAGCATGATAGAGTTTACAGAAAGACATGTATATAATTATGTAATATTACCAGCAGTGTCCCACAAACCCAGATTGACAATGCTTCCATTGACAACCACATTTGCACTGAAATTGTCAAAAACCGTTGGCACGTAATCCTGTTTCCAAGCAAAAAACATAGTGAAAACAAAAAAAATTGATACCTGACACTGACACAAACACTAATGTCTAATAGATTGATATAAAAACCAAAATCTCAGGTCATATTATATCCATTTTCACCTTTAAATTAATGATTTAGTTTATATAACTATCACTGTAAAGTTTCTGTACACTACCAATGAATCACGATTTGATACGTCATCAAAAATGATTGAGTCTTCTCTACATTAAATGTCATCTGAATCCTGATTTGTGATTTGTTGTCGGTGTAAAAACCTATTAAACACTTAAATTAATATTCCGCCCATCGTTTCAAATTGAAGCATCCTACATTGCTTCCCCAAATGGAGACTACATTCAATTGAATTTCAAATTTATGAAATTTAATTATCATTGATCATCCCAACCTCAACCTCAGGTTGAAGACGTGTCAGGTGTCGGGCAAGGATACTTCAATTAGTTCCATTTTTCAAATTAAAATCGGTGTCAATGCGGCTGTGTCGATGCTTCATAGATTCCAATACCCCAAAATCCATATTTTAATTTCAAAGAAAACAACAAAAAGGAAAAGGAAAAAGTGACAGACCGTGGGGAAAGTGTTGCTGGTATATGAAATAAGCAAGCAAGTTTTGCCGACAGCTCCATCCCCAACAGTAACGCACTTAATGAACCTAGAAGCACTCATCTTTTCAACTCAAAAGTGAGTCAGAAAGAAAAAACAAAAAACCTCAGATCTTCACCTGAGGGCCCAATCACACGCCCCCTCCTCCAGCTGCTTCTGCTTCAATTACACATCTGCATAATAACAAAATTATCAGGAATTAGAAAACAGAAGAAAAACAAAAGGAAGAAATAAAATGATGAGTGAAAAAAGAACGAAGCCTAACTAACCCTAATTGGGAAAATGCAGAAAGAGAGATAGTTGAGGAAAATAAAGGGAATTTGAGGGAAATGGAAAATAGAAAGGAAAATGAGGAAACCCTAACCCTTTGGGAGGAGAATGGCATTAAGCGGAAGTTGAGGAAATGGAAGAAAGAGATTATTGAGAGAGAAGAAAGACAACACAAACGAAGAACCAACCTTTTTGGCCCGCGAGATTTTCCCGTTGAACCGTTCTTTCATTTCCAAATAAACCAGCTTTTTCCTCACCTGTTATTATTTTTAGCTTTCTTTTTTTGCTTCAAAAAATAGAATGAATGCTTACTCACTTTCACGAATTAATAGCAATCTAACTCGGATCCTGCTTCAATAAATTCATGGACATGGTCACGGACATTTTCTGATTTGTTTTTTGTTTCCTTCTTTTTACTTTTCATTTTTATTTTTACCACGCGTTAAAACGGAAATACGTGGGAAAATATCCAATTAAAGAAAGACATGCTAAATTTAGTGGCGATTTTGTAACACTAAAAAACAGACACGCGTTTAGGACAAAAAAACGAGATATGCAAGAGTAGTTTGGCTATTTTTCAGAAAGATTAGTAATATTTCTATATATTTATTTTGATGACTTTTCTATAGATATTTTTGGACCAATATAGATAATTTGAACATATATATTTTTTATTGGATAAAATAATAAAACATGATTATGAATTTTCGATACTAACTCTGAGGGATTGACTTAATGGAGCATGACAGAGTTTGTATCTGAGAGATCATAGATTCAAATCCCTTTATGAAATTCACGTGAGTCCTATTATTAAAATAAGACTTAGAAATTTAATAGACTCAACATAAACTTCATATAGTATTAAAGAGTGTAAGAGAGGAATAACACCGACCAACAAAGACGAGTCACACGTGGCTAGTCAAGTTTCACATCATAGATTAGTCATCAACAAAACTGGTGAATACTGCGCACCATTAACACGGTAAAAAAAAGTGTAAGGCTATTCGTGATTTGTGTCCATCACAAGTAACACCTAATCAGTCGAGTTTCTCGGTATAGATTAGTGAATACTACGCACCAATAACATGGTAAAAAAAAGTGTAAGGCTATTTGTGATTTATGTCCATCACGAGATCAACTTTTTTCTATGCATCTATTCATAGTTTTCTTTTTCAACAATGTTAATGTATCTATTTTTTGGTACAACATGCCAAGCATGTTGTGAAACTCACCACAGATACAAATATAAAGCAAACATCATTGATTAATAAAGGATGTCCATAGAATATGGAATTCCAACCAACAAACTGTCTTAACCATTATAATCCATAATAATTGACATGATACTTATATTTCCAATTTTTCATGCTTCCTCTATTTGGCCTTCAAAAACATTACAGTAAGTACACCCTATTTGACTTGAAACATAATCCACAAACAATAAGTAATCAACTCAAGGCCTTGATTTATGTCATGTCTATCACGTGTGATACATTTAATTCCCACCAATTTCGAATTTCTGAGTGACTAAGTCAGATTCACAAACTAGCCAGCATACCCTAAATATAGCAAGTCACAAAGAGAGACATTAATTTCCAAAGGAAAGAAGGAACAAGAAGCAATGAAAACATGCACAATAAAACAACCGAAGTTTTCTCCTGAGTCACATAATTGAAGCGCTAATCCGTGAATTCTGACCACTGTGCAATTATCAGATATATACTCAAAATATCATTTTTTATGTTTGCTCATTTTGTTCATAATGTTTTTGCACATGCTCTTAACTAGGAAGCAACCAAATACTGAATTTATGAACGAATAATAATTGTGAGAATTTTGAACCAATTTTTGGGAAAGATTTTGTCAACCAAAAAACTATA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01301.22	Glyco_hydro_35	40	345	8.90E-115
PF17834.4	GHD	354	423	4.60E-27
PF02140.21	Gal_Lectin	751	830	1.90E-14
PF02449.18	Glyco_hydro_42	60	208	7.80E-11

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH35

Gene Ontology

GO term	Description	Category
GO:0004565	beta-galactosidase activity	Molecular Function
GO:0005773	vacuole	Cellular Component
GO:0005975	carbohydrate metabolic process	Biological Process
GO:0030246	carbohydrate binding	Molecular Function

InterPro

InterPro term	Description
IPR019801	Glycoside hydrolase, family 35, conserved site
IPR001944	Glycoside hydrolase, family 35
IPR017853	Glycoside hydrolase superfamily
IPR031330	Glycoside hydrolase 35, catalytic domain
IPR008979	Galactose-binding-like domain superfamily
IPR043159	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily
IPR000922	D-galactoside/L-rhamnose binding SUEL lectin domain
IPR041392	Beta-galactosidase, beta-sandwich domain

trEMBL

trEMBL term	Description
A0A9D4YJD2	_

SwissProt

SwissProt term	Description
BGA13_ARATH	Beta-galactosidase 13

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G16730	glycosyl hydrolase family 35 protein
Medicago sativa L.	MsG0480021481.01.T01	_
Oryza sativa L.	LOC_Os08g43570.1	beta-galactosidase precursor, putative, expressed
Cucumis sativus L.	Csa013989	_
Glycyrrhiza uralensis Fisch.	Glyur000232s00013755.1	_
Codonopsis lanceolata	Cl_chr07_21670T	_
Arachis hypogaea L.	AH05G02790.1	Beta-galactosidase 13 like

Expression pattern